Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34956 * 126.03346 * 2 1 4 4 C 1.35315 * 107.74457 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.03955 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47418 * 90.00269 * 5 4 3 7 7 C 1.53000 * 109.47191 * 180.02562 * 6 5 4 8 8 N 1.46895 * 109.46833 * 179.97438 * 7 6 5 9 9 C 1.46846 * 111.00414 * 66.04109 * 8 7 6 10 10 C 1.53035 * 109.52651 * 174.16061 * 9 8 7 11 11 C 1.53115 * 109.27873 * 59.18030 * 10 9 8 12 12 C 1.53117 * 109.21374 * 302.31444 * 11 10 9 13 13 H 1.09006 * 109.50760 * 297.74777 * 12 11 10 14 14 C 1.50699 * 109.50773 * 177.62716 * 12 11 10 15 15 H 1.08005 * 120.00004 * 275.20247 * 14 12 11 16 16 C 1.37880 * 120.00338 * 95.20106 * 14 12 11 17 17 N 1.31509 * 120.00119 * 185.49238 * 16 14 12 18 18 Si 1.86798 * 119.99617 * 5.49067 * 16 14 12 19 19 H 1.48504 * 109.47033 * 84.78274 * 18 16 14 20 20 H 1.48498 * 109.47287 * 204.78423 * 18 16 14 21 21 H 1.48498 * 109.47286 * 324.78309 * 18 16 14 22 22 C 1.46854 * 111.00066 * 301.83229 * 8 7 6 23 23 C 1.39874 * 107.92207 * 0.26335 * 4 3 2 24 24 N 1.30844 * 108.20033 * 359.55547 * 23 4 3 25 25 H 1.09004 * 109.47333 * 90.00083 * 1 2 3 26 26 H 1.09004 * 109.46862 * 210.00007 * 1 2 3 27 27 H 1.09001 * 109.47596 * 329.99834 * 1 2 3 28 28 H 1.08000 * 126.12566 * 359.95595 * 3 2 1 29 29 H 1.08995 * 109.47251 * 329.99756 * 5 4 3 30 30 H 1.09003 * 109.47099 * 209.99970 * 5 4 3 31 31 H 1.08993 * 109.46815 * 59.99615 * 6 5 4 32 32 H 1.08997 * 109.46297 * 299.99967 * 6 5 4 33 33 H 1.08995 * 109.47632 * 59.99392 * 7 6 5 34 34 H 1.08998 * 109.46491 * 299.99290 * 7 6 5 35 35 H 1.09001 * 109.46067 * 54.14281 * 9 8 7 36 36 H 1.09000 * 109.45534 * 294.17261 * 9 8 7 37 37 H 1.09007 * 109.49944 * 299.24038 * 10 9 8 38 38 H 1.08998 * 109.53813 * 179.14515 * 10 9 8 39 39 H 1.08999 * 109.52663 * 62.25016 * 11 10 9 40 40 H 1.08997 * 109.52659 * 182.38088 * 11 10 9 41 41 H 0.97001 * 119.99915 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.45909 * 305.85622 * 22 8 7 43 43 H 1.09000 * 109.46146 * 65.83162 * 22 8 7 44 44 H 1.07995 * 125.90329 * 179.73955 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0914 0.0000 4 6 3.5437 0.6667 0.0006 5 6 4.7679 1.5455 0.0013 6 6 5.1815 1.8426 1.4441 7 6 6.4241 2.7354 1.4448 8 7 6.8208 3.0211 2.8300 9 6 7.2676 1.7999 3.5121 10 6 7.8082 2.1570 4.8986 11 6 6.7055 2.8428 5.7099 12 6 6.2239 4.0854 4.9559 13 1 7.0483 4.7912 4.8533 14 6 5.0983 4.7331 5.7205 15 1 4.0848 4.3839 5.5886 16 6 5.3622 5.7714 6.5884 17 7 4.3990 6.2649 7.3356 18 14 7.0880 6.4771 6.7030 19 1 7.2765 7.4986 5.6416 20 1 7.2782 7.1060 8.0347 21 1 8.0812 5.3878 6.5236 22 6 5.7295 3.6717 3.5665 23 6 3.5347 -0.7320 -0.0052 24 7 2.2892 -1.1327 0.0006 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9280 2.1194 -0.0007 29 1 4.5443 2.4804 -0.5125 30 1 5.5823 1.0344 -0.5122 31 1 5.4051 0.9077 1.9578 32 1 4.3671 2.3537 1.9575 33 1 6.2002 3.6702 0.9311 34 1 7.2386 2.2246 0.9312 35 1 8.0546 1.3242 2.9269 36 1 6.4270 1.1137 3.6158 37 1 8.6575 2.8324 4.7950 38 1 8.1258 1.2489 5.4110 39 1 5.8720 2.1540 5.8468 40 1 7.0986 3.1369 6.6830 41 1 4.5848 6.9951 7.9464 42 1 5.3995 4.5556 3.0207 43 1 4.8963 2.9766 3.6700 44 1 4.4054 -1.3708 -0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397840762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = 41.841190 kcal Electronic energy + Delta-G solvation = -21571.733812 eV Core-core repulsion = 18524.055686 eV Total energy + Delta-G solvation = -3047.678126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.09921 -40.08873 -36.47858 -34.93826 -34.07248 -32.97938 -31.93668 -30.36937 -28.03455 -26.94718 -26.16959 -24.13980 -23.02766 -22.05713 -22.01066 -21.02917 -20.03536 -18.91367 -17.71715 -16.86084 -16.33944 -16.12938 -15.90715 -15.54073 -15.32208 -15.06321 -14.95674 -14.57088 -14.39958 -14.12053 -13.75687 -13.63339 -13.53202 -13.17502 -12.94910 -12.84371 -12.76083 -12.54197 -12.33223 -12.21303 -11.84490 -11.78540 -11.52337 -11.26557 -11.20489 -10.99090 -10.78957 -10.60281 -10.37070 -9.34569 -8.93835 -8.27929 -6.30885 0.95312 1.37644 1.38131 1.50614 1.70513 1.85860 2.37678 3.06339 3.23960 3.66935 3.99263 4.09106 4.14274 4.21025 4.27843 4.31570 4.33874 4.40142 4.51073 4.53916 4.63320 4.64798 4.72884 4.77595 4.83586 4.89017 4.96755 4.98145 5.02949 5.09333 5.12448 5.17300 5.26028 5.29917 5.47878 5.51471 5.59837 5.68325 5.75916 5.79010 6.14652 6.22075 6.39855 6.45587 6.73956 6.77411 7.35521 8.89204 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.003872 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.773190 B = 7229.048624 C = 7977.832657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.386 5.386 3 C 0.048 3.952 4 C -0.246 4.246 5 C -0.024 4.024 6 C -0.141 4.141 7 C 0.057 3.943 8 N -0.549 5.549 9 C 0.062 3.938 10 C -0.115 4.115 11 C -0.111 4.111 12 C 0.017 3.983 13 H 0.033 0.967 14 C -0.515 4.515 15 H 0.027 0.973 16 C 0.014 3.986 17 N -0.952 5.952 18 Si 0.944 3.056 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.247 1.247 22 C 0.086 3.914 23 C 0.041 3.959 24 N -0.339 5.339 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.194 0.806 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.265 0.735 42 H 0.055 0.945 43 H 0.014 0.986 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -11.639 -17.643 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.169 5.169 3 C -0.099 4.099 4 C -0.258 4.258 5 C -0.064 4.064 6 C -0.181 4.181 7 C -0.071 4.071 8 N -0.272 5.272 9 C -0.066 4.066 10 C -0.153 4.153 11 C -0.149 4.149 12 C -0.003 4.003 13 H 0.052 0.948 14 C -0.553 4.553 15 H 0.045 0.955 16 C -0.183 4.183 17 N -0.592 5.592 18 Si 0.768 3.232 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.170 1.170 22 C -0.042 4.042 23 C -0.144 4.144 24 N -0.161 5.161 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.211 0.789 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.033 0.967 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.040 -12.197 -17.521 21.348 hybrid contribution -0.301 0.745 0.806 1.138 sum -0.262 -11.452 -16.715 20.264 Atomic orbital electron populations 1.22139 0.72448 1.05540 1.04561 1.48787 1.07836 1.03521 1.56726 1.22852 0.91174 0.94283 1.01560 1.20398 0.95386 0.94067 1.15930 1.19751 0.93361 0.97926 0.95317 1.22144 0.98483 0.99678 0.97751 1.22307 0.96417 0.99399 0.88983 1.62212 1.36581 1.25441 1.02938 1.22052 0.99050 0.90584 0.94879 1.21647 0.97856 1.00388 0.95391 1.21731 0.97214 0.97707 0.98257 1.19160 0.94723 0.94132 0.92253 0.94840 1.21262 0.93919 1.16495 1.23619 0.95489 1.25906 1.01077 0.96846 0.94491 1.70062 1.35169 1.27706 1.26275 0.85784 0.80827 0.79374 0.77221 1.19173 1.21606 1.17036 1.21889 0.91190 0.96653 0.94474 1.24189 0.95365 0.95378 0.99433 1.77241 1.02699 1.09929 1.26257 0.89257 0.89398 0.87538 0.78930 0.90587 0.89621 0.92846 0.94219 0.90714 0.88819 0.88821 0.95574 0.92009 0.90376 0.94486 0.94556 0.92618 0.92656 0.96732 0.78448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 11.47 127.77 1.47 2.70 16 2 N -0.39 -8.52 4.01 -369.55 -1.48 -10.00 16 3 C 0.05 1.00 11.40 83.54 0.95 1.96 16 4 C -0.25 -5.39 5.35 -20.15 -0.11 -5.50 16 5 C -0.02 -0.46 5.70 29.85 0.17 -0.29 16 6 C -0.14 -3.38 4.50 30.60 0.14 -3.25 16 7 C 0.06 1.38 5.36 86.30 0.46 1.84 16 8 N -0.55 -17.70 4.86 -896.10 -4.35 -22.05 16 9 C 0.06 1.81 5.05 86.33 0.44 2.25 16 10 C -0.12 -3.74 6.09 30.64 0.19 -3.55 16 11 C -0.11 -4.69 5.26 30.67 0.16 -4.53 16 12 C 0.02 0.78 1.94 -11.44 -0.02 0.76 16 13 H 0.03 1.61 5.27 -2.38 -0.01 1.60 16 14 C -0.51 -29.76 8.87 25.60 0.23 -29.54 16 15 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 16 C 0.01 0.80 5.47 84.66 0.46 1.26 16 17 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 18 Si 0.94 45.25 27.01 68.60 1.85 47.11 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.25 -11.09 6.80 99.48 0.68 -10.41 16 22 C 0.09 3.48 4.11 86.37 0.35 3.84 16 23 C 0.04 0.96 11.96 85.24 1.02 1.98 16 24 N -0.34 -8.91 12.58 -57.02 -0.72 -9.63 16 25 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.19 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.36 6.68 -2.39 -0.02 1.34 16 32 H 0.04 1.17 6.50 -2.39 -0.02 1.15 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.83 8.06 -2.39 -0.02 1.81 16 35 H 0.09 2.18 8.06 -2.39 -0.02 2.16 16 36 H 0.03 0.79 6.76 -2.39 -0.02 0.77 16 37 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.05 2.30 8.12 -2.39 -0.02 2.28 16 43 H 0.01 0.62 6.61 -2.39 -0.02 0.60 16 44 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -72.67 345.93 2.43 -70.25 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.92 Total: 14.26 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 5.91 Total: -30.08 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -6.25 Total: -101.54 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.85 Total: 47.11 kcal Total: -72.67 2.43 -70.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397840762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.087 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds