Wall clock time and date at job start Mon Mar 30 2020 02:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34954 * 126.03475 * 2 1 4 4 C 1.35316 * 107.74368 * 179.73518 * 3 2 1 5 5 C 1.50703 * 126.03429 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46816 * 90.00597 * 5 4 3 7 7 C 1.53002 * 109.46860 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46660 * 179.97438 * 7 6 5 9 9 C 1.46841 * 110.99742 * 66.05081 * 8 7 6 10 10 C 1.53039 * 109.52031 * 185.83466 * 9 8 7 11 11 C 1.53121 * 109.27955 * 300.81780 * 10 9 8 12 12 C 1.53115 * 109.15702 * 57.65788 * 11 10 9 13 13 H 1.08994 * 109.50882 * 62.28851 * 12 11 10 14 14 C 1.50701 * 109.49822 * 182.36663 * 12 11 10 15 15 H 1.08006 * 120.00264 * 119.99915 * 14 12 11 16 16 C 1.37881 * 120.00267 * 299.99407 * 14 12 11 17 17 N 1.31517 * 119.99272 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00135 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47309 * 90.00234 * 18 16 14 20 20 H 1.48501 * 109.46684 * 210.00029 * 18 16 14 21 21 H 1.48501 * 109.47045 * 329.99791 * 18 16 14 22 22 C 1.46855 * 110.99473 * 190.25376 * 8 7 6 23 23 C 1.39868 * 107.92272 * 0.02562 * 4 3 2 24 24 N 1.30837 * 108.20148 * 359.97438 * 23 4 3 25 25 H 1.09007 * 109.47152 * 90.00174 * 1 2 3 26 26 H 1.09004 * 109.47324 * 209.99797 * 1 2 3 27 27 H 1.08997 * 109.47734 * 329.99813 * 1 2 3 28 28 H 1.07999 * 126.12426 * 359.75442 * 3 2 1 29 29 H 1.08997 * 109.46923 * 209.99900 * 5 4 3 30 30 H 1.08998 * 109.47146 * 330.00203 * 5 4 3 31 31 H 1.09001 * 109.47247 * 299.99534 * 6 5 4 32 32 H 1.09003 * 109.47303 * 59.99535 * 6 5 4 33 33 H 1.08997 * 109.47206 * 299.99503 * 7 6 5 34 34 H 1.09003 * 109.47237 * 59.99869 * 7 6 5 35 35 H 1.09003 * 109.46518 * 305.84535 * 9 8 7 36 36 H 1.09000 * 109.46745 * 65.83078 * 9 8 7 37 37 H 1.09000 * 109.50528 * 60.76290 * 10 9 8 38 38 H 1.09004 * 109.50027 * 180.83637 * 10 9 8 39 39 H 1.08997 * 109.51946 * 177.56041 * 11 10 9 40 40 H 1.08993 * 109.52200 * 297.68524 * 11 10 9 41 41 H 0.97001 * 119.99548 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.46550 * 294.17955 * 22 8 7 43 43 H 1.08996 * 109.45905 * 54.15092 * 22 8 7 44 44 H 1.08001 * 125.89990 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6667 0.0060 5 6 4.7678 1.5455 0.0076 6 6 5.1770 1.8473 1.4507 7 6 6.4202 2.7391 1.4523 8 7 6.8127 3.0293 2.8379 9 6 7.2564 1.8101 3.5255 10 6 7.5175 2.1213 5.0010 11 6 8.5909 3.2083 5.1061 12 6 8.1250 4.4501 4.3411 13 1 7.2142 4.8380 4.7970 14 6 9.2008 5.5044 4.3906 15 1 9.6404 5.8708 3.4746 16 6 9.6238 6.0012 5.6052 17 7 9.0888 5.5547 6.7206 18 14 10.9567 7.3085 5.6664 19 1 10.3324 8.6549 5.6141 20 1 11.7287 7.1695 6.9274 21 1 11.8687 7.1403 4.5066 22 6 7.8464 4.0714 2.8847 23 6 3.5346 -0.7320 0.0091 24 7 2.2891 -1.1327 0.0058 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.9280 2.1194 -0.0037 29 1 5.5838 1.0328 -0.5017 30 1 4.5458 2.4788 -0.5099 31 1 4.3610 2.3600 1.9600 32 1 5.3989 0.9140 1.9682 33 1 7.2361 2.2260 0.9432 34 1 6.1987 3.6724 0.9347 35 1 6.4824 1.0466 3.4470 36 1 8.1740 1.4459 3.0635 37 1 6.5970 2.4725 5.4673 38 1 7.8611 1.2195 5.5079 39 1 8.7490 3.4639 6.1538 40 1 9.5231 2.8425 4.6758 41 1 9.3867 5.9040 7.5751 42 1 8.7611 3.6965 2.4255 43 1 7.5008 4.9503 2.3407 44 1 4.4054 -1.3709 0.0136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397840763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:31 Heat of formation + Delta-G solvation = 62.254233 kcal Electronic energy + Delta-G solvation = -21132.875283 eV Core-core repulsion = 18086.082333 eV Total energy + Delta-G solvation = -3046.792950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30983 -38.27259 -35.22046 -33.62804 -32.68683 -31.45377 -29.94281 -29.33217 -27.24103 -24.94533 -24.90907 -22.49187 -21.64490 -21.23577 -20.40842 -20.05773 -18.52526 -16.96655 -16.30016 -15.62114 -15.08941 -15.04775 -14.57464 -14.48782 -14.00998 -13.50197 -13.45109 -13.21738 -12.97762 -12.78850 -12.68290 -12.47147 -12.13581 -11.85260 -11.57673 -11.40223 -11.02038 -10.92405 -10.72063 -10.63945 -10.56947 -10.30914 -9.96901 -9.77942 -9.56516 -9.40904 -8.96038 -8.64619 -8.43543 -8.25810 -7.55984 -5.93472 -3.99492 1.74210 2.36376 2.68633 3.33128 3.39719 3.42766 4.30829 4.43341 4.63150 4.68841 4.83349 4.93633 5.08671 5.11081 5.18324 5.36387 5.46373 5.58339 5.64691 5.71575 5.87706 5.88584 5.89991 6.02050 6.07943 6.17068 6.32724 6.41981 6.50975 6.54025 6.56111 6.58815 6.79736 6.82573 6.85546 7.04239 7.28727 7.47405 7.54886 7.76073 7.80714 7.92805 8.14401 8.23133 8.53422 9.04823 9.64500 11.12464 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039334 B = 0.002796 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.687465 B =10012.751450 C =10140.271266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.054 3.946 4 C -0.227 4.227 5 C -0.040 4.040 6 C -0.108 4.108 7 C 0.055 3.945 8 N -0.540 5.540 9 C 0.062 3.938 10 C -0.118 4.118 11 C -0.111 4.111 12 C 0.054 3.946 13 H 0.033 0.967 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.068 3.932 23 C 0.052 3.948 24 N -0.303 5.303 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.173 0.827 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.259 0.741 42 H 0.017 0.983 43 H 0.057 0.943 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.787 -10.013 -12.947 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.092 4.092 4 C -0.239 4.239 5 C -0.079 4.079 6 C -0.146 4.146 7 C -0.074 4.074 8 N -0.264 5.264 9 C -0.066 4.066 10 C -0.156 4.156 11 C -0.149 4.149 12 C 0.036 3.964 13 H 0.052 0.948 14 C -0.552 4.552 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.059 4.059 23 C -0.134 4.134 24 N -0.124 5.124 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.190 0.810 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -15.148 -10.814 -12.506 22.423 hybrid contribution 1.945 1.118 -0.321 2.266 sum -13.203 -9.696 -12.826 20.805 Atomic orbital electron populations 1.21820 0.74437 1.04458 1.03150 1.48428 1.06522 1.03935 1.57465 1.22357 0.90940 0.93301 1.02603 1.20160 0.94673 0.93978 1.15062 1.19877 0.93255 0.97500 0.97256 1.21601 0.97886 0.99665 0.95465 1.22088 0.95962 0.98879 0.90457 1.61990 1.41756 1.09266 1.13387 1.22058 0.97189 0.91541 0.95838 1.21678 1.00880 0.99016 0.93983 1.21646 0.94568 0.94230 1.04421 1.18660 0.96581 0.92789 0.88407 0.94841 1.21167 1.20598 1.21135 0.92336 0.92886 1.24941 0.96580 0.96610 0.95773 1.69899 1.42641 1.42852 0.97380 0.86634 0.82044 0.82186 0.77348 1.20731 1.21303 1.20037 1.22292 0.90284 0.92136 1.01166 1.23814 0.95079 0.94770 0.99776 1.77319 1.01821 1.08408 1.24852 0.90951 0.89436 0.89498 0.81016 0.91435 0.91499 0.91430 0.92080 0.95777 0.91379 0.92190 0.96120 0.92204 0.93694 0.89181 0.95246 0.93107 0.96460 0.92412 0.80187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.47 59.84 0.69 1.29 16 2 N -0.38 -3.90 4.01 -68.16 -0.27 -4.18 16 3 C 0.05 0.53 11.40 -17.22 -0.20 0.33 16 4 C -0.23 -2.47 5.35 -105.05 -0.56 -3.03 16 5 C -0.04 -0.41 5.70 -27.88 -0.16 -0.57 16 6 C -0.11 -1.36 5.13 -26.73 -0.14 -1.50 16 7 C 0.05 0.81 4.96 -3.82 -0.02 0.79 16 8 N -0.54 -10.12 4.66 -234.66 -1.09 -11.21 16 9 C 0.06 1.12 5.29 -3.84 -0.02 1.10 16 10 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 12 C 0.05 1.38 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.51 -14.23 8.57 -34.44 -0.29 -14.53 16 15 H 0.05 1.45 7.75 -52.48 -0.41 1.04 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -25.62 11.35 55.43 0.63 -25.00 16 18 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.07 1.47 4.68 -3.83 -0.02 1.46 16 23 C 0.05 0.59 11.96 -17.37 -0.21 0.38 16 24 N -0.30 -3.78 12.58 30.62 0.39 -3.40 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 33 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 0.98 7.98 -51.93 -0.41 0.56 16 35 H 0.06 0.96 6.22 -51.93 -0.32 0.64 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 2.42 6.15 -51.93 -0.32 2.11 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 44 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -31.48 349.45 -9.32 -40.80 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.69 Total: -1.86 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.53 Total: -16.81 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.35 Total: -43.78 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.48 -9.32 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397840763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.052 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds