Wall clock time and date at job start Mon Mar 30 2020 02:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46864 * 2 1 4 4 C 1.34953 * 126.03725 * 125.00110 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.20624 * 4 3 2 6 6 C 1.50703 * 126.03521 * 179.76875 * 5 4 3 7 7 N 1.46895 * 109.47262 * 90.00181 * 6 5 4 8 8 C 1.46849 * 111.00149 * 45.78822 * 7 6 5 9 9 C 1.53035 * 109.52252 * 185.84211 * 8 7 6 10 10 C 1.53117 * 109.28094 * 300.82013 * 9 8 7 11 11 C 1.53002 * 109.57515 * 177.59248 * 10 9 8 12 12 C 1.50701 * 109.46841 * 65.28782 * 11 10 9 13 13 H 1.07994 * 120.00565 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99894 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99487 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00311 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46892 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47393 * 119.99426 * 16 14 12 19 19 H 1.48504 * 109.47087 * 239.99717 * 16 14 12 20 20 C 1.53114 * 109.15938 * 57.65505 * 10 9 8 21 21 C 1.46845 * 111.00495 * 170.00067 * 7 6 5 22 22 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 23 23 N 1.30837 * 108.19940 * 0.36269 * 22 5 4 24 24 H 1.09003 * 109.46981 * 60.00430 * 1 2 3 25 25 H 1.09009 * 109.46584 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47278 * 299.99670 * 1 2 3 27 27 H 1.08998 * 109.47551 * 240.00363 * 2 1 3 28 28 H 1.09002 * 109.47429 * 119.99857 * 2 1 3 29 29 H 1.08002 * 126.12372 * 359.93597 * 4 3 2 30 30 H 1.09002 * 109.47285 * 209.99879 * 6 5 4 31 31 H 1.08996 * 109.47189 * 329.99836 * 6 5 4 32 32 H 1.09006 * 109.46147 * 305.85471 * 8 7 6 33 33 H 1.08996 * 109.46092 * 65.82266 * 8 7 6 34 34 H 1.09000 * 109.50047 * 180.87650 * 9 8 7 35 35 H 1.09001 * 109.50563 * 60.76430 * 9 8 7 36 36 H 1.09004 * 109.51703 * 297.75294 * 10 9 8 37 37 H 1.09001 * 109.46551 * 185.28490 * 11 10 9 38 38 H 1.08994 * 109.47320 * 305.28535 * 11 10 9 39 39 H 0.97003 * 119.99785 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.50415 * 182.40687 * 20 10 9 41 41 H 1.08995 * 109.53497 * 62.31032 * 20 10 9 42 42 H 1.09004 * 109.45977 * 294.17645 * 21 7 6 43 43 H 1.08997 * 109.46384 * 54.14994 * 21 7 6 44 44 H 1.08001 * 125.90034 * 180.14354 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0679 3.2149 0.5486 6 6 3.9461 4.2030 1.2723 7 7 5.3042 4.1510 0.7150 8 6 5.2709 4.1487 -0.7531 9 6 6.6874 3.9476 -1.2965 10 6 7.5884 5.0771 -0.7896 11 6 9.0199 4.8500 -1.2797 12 6 9.0601 4.9616 -2.7820 13 1 8.1552 5.1729 -3.3323 14 6 10.2521 4.7929 -3.4542 15 7 11.3540 4.5351 -2.7842 16 14 10.3019 4.9306 -5.3164 17 1 8.9388 5.2238 -5.8277 18 1 11.2240 6.0269 -5.7073 19 1 10.7821 3.6499 -5.8948 20 6 7.5674 5.0880 0.7414 21 6 6.1255 5.2560 1.2257 22 6 2.3128 3.4723 -0.6001 23 7 1.6808 2.3747 -0.9281 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.3180 1.4130 1.7366 30 1 3.5411 5.2074 1.1490 31 1 3.9785 3.9519 2.3324 32 1 4.6302 3.3382 -1.1006 33 1 4.8772 5.1008 -1.1089 34 1 6.6645 3.9616 -2.3862 35 1 7.0766 2.9894 -0.9524 36 1 7.2217 6.0322 -1.1658 37 1 9.6772 5.6012 -0.8418 38 1 9.3532 3.8565 -0.9801 39 1 12.1927 4.4168 -3.2570 40 1 8.1732 5.9168 1.1077 41 1 7.9707 4.1481 1.1181 42 1 5.7277 6.2029 0.8606 43 1 6.1055 5.2498 2.3155 44 1 2.2578 4.4153 -1.1237 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399260747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:44 Heat of formation + Delta-G solvation = 62.574545 kcal Electronic energy + Delta-G solvation = -21572.398387 eV Core-core repulsion = 18525.619327 eV Total energy + Delta-G solvation = -3046.779060 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33721 -38.53189 -35.12235 -34.13878 -32.35150 -30.62304 -30.38756 -29.77428 -27.69309 -25.20220 -24.03471 -23.09947 -22.41193 -20.91358 -20.45801 -19.89008 -18.77373 -17.03244 -16.21052 -15.85729 -15.28546 -14.81307 -14.50628 -14.39058 -14.13476 -13.96681 -13.39987 -13.20706 -13.04200 -12.76437 -12.43280 -12.33614 -12.24943 -11.95044 -11.71945 -11.59225 -11.34610 -11.09134 -10.72291 -10.66687 -10.53636 -10.42311 -10.18530 -9.85040 -9.49995 -9.39498 -8.95319 -8.79958 -8.48171 -8.27074 -7.86607 -5.92605 -3.93430 1.86143 2.41393 2.73184 3.34962 3.42488 3.46720 4.26200 4.40918 4.51988 4.64189 4.75410 4.87539 4.93919 5.17134 5.25500 5.37868 5.40394 5.43050 5.47257 5.57489 5.65997 5.73135 5.74137 5.82593 5.89581 6.03796 6.11847 6.16623 6.26146 6.38366 6.54389 6.60280 6.69119 6.78422 6.95620 7.08407 7.20571 7.29197 7.48592 7.54422 7.66022 7.77165 7.94438 8.09125 8.52799 9.13583 9.69768 11.18857 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.003661 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.181046 B = 7646.117814 C = 8483.779547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.376 5.376 4 C 0.071 3.929 5 C -0.230 4.230 6 C 0.132 3.868 7 N -0.533 5.533 8 C 0.058 3.942 9 C -0.099 4.099 10 C -0.081 4.081 11 C 0.028 3.972 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.111 4.111 21 C 0.059 3.941 22 C 0.055 3.945 23 N -0.297 5.297 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.172 0.828 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.258 0.742 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.027 0.973 43 H 0.064 0.936 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.004 -6.125 10.229 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.159 5.159 4 C -0.075 4.075 5 C -0.242 4.242 6 C 0.004 3.996 7 N -0.258 5.258 8 C -0.069 4.069 9 C -0.137 4.137 10 C -0.100 4.100 11 C -0.009 4.009 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.149 4.149 21 C -0.068 4.068 22 C -0.132 4.132 23 N -0.118 5.118 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.189 0.811 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -20.471 -7.307 9.533 23.735 hybrid contribution 0.434 1.159 -0.763 1.454 sum -20.038 -6.148 8.770 22.721 Atomic orbital electron populations 1.22048 0.93969 1.02693 1.03492 1.21648 0.95861 0.77709 1.03774 1.48627 1.35916 1.10044 1.21349 1.22305 0.94683 0.94330 0.96229 1.19931 1.07350 0.95513 1.01382 1.20308 0.86872 0.94921 0.97504 1.62090 1.10494 1.44896 1.08357 1.22210 0.98846 0.99356 0.86504 1.21536 0.92414 0.99404 1.00319 1.21228 0.99096 0.97220 0.92420 1.19120 0.89362 0.96929 0.95517 1.21312 0.93893 1.47418 0.92360 0.92674 1.25021 0.95880 0.95610 0.98061 1.69981 0.99031 1.49496 1.35172 0.86608 0.77994 0.77557 0.86289 1.19780 1.21137 1.21124 1.21675 0.93863 1.01677 0.97671 1.22096 0.94817 0.91190 0.98739 1.23792 0.95834 0.97453 0.96094 1.77292 1.24058 0.96906 1.13545 0.91130 0.90842 0.92201 0.89840 0.88737 0.81053 0.94611 0.90715 0.91212 0.95868 0.91242 0.92182 0.93140 0.96824 0.96582 0.93218 0.92271 0.91716 0.95470 0.91748 0.80526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 10.10 37.16 0.38 -0.71 16 2 C 0.13 0.98 7.23 -4.04 -0.03 0.95 16 3 N -0.38 -4.20 3.68 -61.36 -0.23 -4.43 16 4 C 0.07 0.78 11.36 -17.22 -0.20 0.58 16 5 C -0.23 -2.79 4.20 -105.06 -0.44 -3.24 16 6 C 0.13 1.60 5.76 -4.98 -0.03 1.57 16 7 N -0.53 -7.90 4.80 -236.12 -1.13 -9.03 16 8 C 0.06 0.96 4.76 -3.83 -0.02 0.94 16 9 C -0.10 -1.95 5.15 -26.65 -0.14 -2.09 16 10 C -0.08 -1.70 2.20 -90.50 -0.20 -1.90 16 11 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 12 C -0.51 -14.56 8.45 -34.44 -0.29 -14.85 16 13 H 0.06 1.54 7.08 -52.49 -0.37 1.16 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 C -0.11 -1.97 5.38 -26.65 -0.14 -2.11 16 21 C 0.06 0.88 5.42 -3.84 -0.02 0.86 16 22 C 0.06 0.70 10.36 -17.37 -0.18 0.52 16 23 N -0.30 -3.99 12.42 30.62 0.38 -3.61 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.46 8.07 -51.93 -0.42 0.04 16 29 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.14 5.66 -51.93 -0.29 0.85 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 1.47 7.06 -51.93 -0.37 1.11 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 44 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -32.44 349.66 -9.29 -41.73 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.77 Total: -2.91 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.53 Total: -17.39 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -0.24 Total: -43.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.44 -9.29 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399260747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.307 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds