Wall clock time and date at job start Mon Mar 30 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46864 * 2 1 4 4 C 1.34953 * 126.03725 * 125.00110 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.20624 * 4 3 2 6 6 C 1.50703 * 126.03521 * 179.76875 * 5 4 3 7 7 N 1.46895 * 109.47262 * 90.00181 * 6 5 4 8 8 C 1.46849 * 111.00149 * 45.78822 * 7 6 5 9 9 C 1.53035 * 109.52252 * 185.84211 * 8 7 6 10 10 C 1.53117 * 109.28094 * 300.82013 * 9 8 7 11 11 C 1.53002 * 109.57515 * 177.59248 * 10 9 8 12 12 C 1.50701 * 109.46841 * 65.28782 * 11 10 9 13 13 H 1.07994 * 120.00565 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99894 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99487 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00311 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46892 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47393 * 119.99426 * 16 14 12 19 19 H 1.48504 * 109.47087 * 239.99717 * 16 14 12 20 20 C 1.53114 * 109.15938 * 57.65505 * 10 9 8 21 21 C 1.46845 * 111.00495 * 170.00067 * 7 6 5 22 22 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 23 23 N 1.30837 * 108.19940 * 0.36269 * 22 5 4 24 24 H 1.09003 * 109.46981 * 60.00430 * 1 2 3 25 25 H 1.09009 * 109.46584 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47278 * 299.99670 * 1 2 3 27 27 H 1.08998 * 109.47551 * 240.00363 * 2 1 3 28 28 H 1.09002 * 109.47429 * 119.99857 * 2 1 3 29 29 H 1.08002 * 126.12372 * 359.93597 * 4 3 2 30 30 H 1.09002 * 109.47285 * 209.99879 * 6 5 4 31 31 H 1.08996 * 109.47189 * 329.99836 * 6 5 4 32 32 H 1.09006 * 109.46147 * 305.85471 * 8 7 6 33 33 H 1.08996 * 109.46092 * 65.82266 * 8 7 6 34 34 H 1.09000 * 109.50047 * 180.87650 * 9 8 7 35 35 H 1.09001 * 109.50563 * 60.76430 * 9 8 7 36 36 H 1.09004 * 109.51703 * 297.75294 * 10 9 8 37 37 H 1.09001 * 109.46551 * 185.28490 * 11 10 9 38 38 H 1.08994 * 109.47320 * 305.28535 * 11 10 9 39 39 H 0.97003 * 119.99785 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.50415 * 182.40687 * 20 10 9 41 41 H 1.08995 * 109.53497 * 62.31032 * 20 10 9 42 42 H 1.09004 * 109.45977 * 294.17645 * 21 7 6 43 43 H 1.08997 * 109.46384 * 54.14994 * 21 7 6 44 44 H 1.08001 * 125.90034 * 180.14354 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0679 3.2149 0.5486 6 6 3.9461 4.2030 1.2723 7 7 5.3042 4.1510 0.7150 8 6 5.2709 4.1487 -0.7531 9 6 6.6874 3.9476 -1.2965 10 6 7.5884 5.0771 -0.7896 11 6 9.0199 4.8500 -1.2797 12 6 9.0601 4.9616 -2.7820 13 1 8.1552 5.1729 -3.3323 14 6 10.2521 4.7929 -3.4542 15 7 11.3540 4.5351 -2.7842 16 14 10.3019 4.9306 -5.3164 17 1 8.9388 5.2238 -5.8277 18 1 11.2240 6.0269 -5.7073 19 1 10.7821 3.6499 -5.8948 20 6 7.5674 5.0880 0.7414 21 6 6.1255 5.2560 1.2257 22 6 2.3128 3.4723 -0.6001 23 7 1.6808 2.3747 -0.9281 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.3180 1.4130 1.7366 30 1 3.5411 5.2074 1.1490 31 1 3.9785 3.9519 2.3324 32 1 4.6302 3.3382 -1.1006 33 1 4.8772 5.1008 -1.1089 34 1 6.6645 3.9616 -2.3862 35 1 7.0766 2.9894 -0.9524 36 1 7.2217 6.0322 -1.1658 37 1 9.6772 5.6012 -0.8418 38 1 9.3532 3.8565 -0.9801 39 1 12.1927 4.4168 -3.2570 40 1 8.1732 5.9168 1.1077 41 1 7.9707 4.1481 1.1181 42 1 5.7277 6.2029 0.8606 43 1 6.1055 5.2498 2.3155 44 1 2.2578 4.4153 -1.1237 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399260747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:43 Heat of formation + Delta-G solvation = 42.636208 kcal Electronic energy + Delta-G solvation = -21573.262978 eV Core-core repulsion = 18525.619327 eV Total energy + Delta-G solvation = -3047.643651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.19386 -39.87675 -36.42616 -35.23861 -34.22711 -31.85246 -31.52336 -30.82227 -29.30390 -26.61000 -24.98176 -24.57972 -23.73125 -22.23934 -21.50893 -20.83332 -20.32188 -18.42471 -17.81209 -16.96034 -16.48762 -16.14226 -15.89985 -15.44427 -15.14242 -15.04366 -14.82062 -14.62260 -14.22625 -14.05095 -13.67396 -13.44414 -13.29228 -13.20482 -12.96358 -12.87400 -12.60294 -12.55807 -12.41907 -12.18563 -12.11124 -11.95964 -11.61414 -11.39568 -11.21066 -10.84665 -10.66178 -10.52031 -10.29289 -9.40447 -8.96795 -8.17287 -6.26444 1.02672 1.38307 1.38663 1.51785 1.70020 1.81964 2.41517 3.15340 3.26729 3.61006 4.03191 4.08765 4.09783 4.12941 4.14674 4.19198 4.34219 4.39523 4.47202 4.52287 4.64536 4.73086 4.78160 4.82491 4.84516 4.86834 4.92243 5.00158 5.04421 5.17107 5.20479 5.24068 5.29990 5.41938 5.46403 5.47540 5.60326 5.72932 5.83508 5.91433 6.21223 6.26920 6.32710 6.38173 6.79250 6.89881 7.41638 8.94851 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.003661 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.181046 B = 7646.117814 C = 8483.779547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 N -0.377 5.377 4 C 0.075 3.925 5 C -0.248 4.248 6 C 0.138 3.862 7 N -0.541 5.541 8 C 0.076 3.924 9 C -0.093 4.093 10 C -0.074 4.074 11 C 0.034 3.966 12 C -0.528 4.528 13 H 0.057 0.943 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.959 3.041 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.279 1.279 20 C -0.106 4.106 21 C 0.066 3.934 22 C 0.043 3.957 23 N -0.331 5.331 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.201 0.799 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.046 0.954 37 H -0.013 1.013 38 H -0.013 1.013 39 H 0.262 0.738 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.094 0.906 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.579 -6.544 11.000 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 N -0.160 5.160 4 C -0.072 4.072 5 C -0.260 4.260 6 C 0.010 3.990 7 N -0.266 5.266 8 C -0.052 4.052 9 C -0.131 4.131 10 C -0.093 4.093 11 C -0.003 4.003 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.784 3.216 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.144 4.144 21 C -0.061 4.061 22 C -0.143 4.143 23 N -0.153 5.153 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.144 0.856 29 H 0.218 0.782 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.112 0.888 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -22.074 -7.729 10.307 25.559 hybrid contribution 0.936 1.222 -0.967 1.818 sum -21.138 -6.507 9.340 24.008 Atomic orbital electron populations 1.21989 0.93466 1.03879 1.02141 1.22013 0.96352 0.76218 1.05316 1.48962 1.35585 1.10764 1.20707 1.22807 0.93796 0.94149 0.96466 1.20034 1.08016 0.96275 1.01653 1.20340 0.84928 0.95386 0.98300 1.62058 1.12515 1.45055 1.06987 1.21925 0.95869 0.99518 0.87934 1.21405 0.94611 0.98010 0.99050 1.21079 0.95764 0.97353 0.95055 1.19009 0.92287 0.94260 0.94748 1.21684 0.94117 1.47201 0.93635 0.92454 1.25947 0.95466 0.95140 1.03408 1.70111 0.99724 1.50396 1.37360 0.85482 0.78453 0.77785 0.79865 1.18748 1.20345 1.20496 1.21590 0.96624 1.01375 0.94829 1.22032 0.92326 0.91389 1.00368 1.24005 0.96013 0.97683 0.96564 1.77235 1.25226 0.97795 1.15024 0.93371 0.88380 0.92555 0.89889 0.85595 0.78191 0.93951 0.88589 0.91084 0.95588 0.93424 0.93747 0.93555 0.99445 0.99483 0.92938 0.91926 0.92670 0.94928 0.88770 0.79991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.10 71.98 0.73 -1.10 16 2 C 0.12 1.54 7.23 86.38 0.62 2.17 16 3 N -0.38 -7.78 3.68 -348.06 -1.28 -9.06 16 4 C 0.08 1.45 11.36 83.54 0.95 2.40 16 5 C -0.25 -5.50 4.20 -20.15 -0.08 -5.58 16 6 C 0.14 2.91 5.76 85.56 0.49 3.40 16 7 N -0.54 -14.78 4.80 -900.94 -4.32 -19.10 16 8 C 0.08 2.39 4.76 86.32 0.41 2.81 16 9 C -0.09 -3.72 5.15 30.65 0.16 -3.56 16 10 C -0.07 -3.15 2.20 -10.72 -0.02 -3.17 16 11 C 0.03 1.85 4.45 29.85 0.13 1.99 16 12 C -0.53 -30.83 8.45 25.60 0.22 -30.61 16 13 H 0.06 3.25 7.08 -2.91 -0.02 3.23 16 14 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 15 N -0.93 -58.40 13.29 21.45 0.28 -58.11 16 16 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 17 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 C -0.11 -3.70 5.38 30.64 0.16 -3.54 16 21 C 0.07 1.80 5.42 86.33 0.47 2.26 16 22 C 0.04 1.06 10.36 85.23 0.88 1.94 16 23 N -0.33 -8.67 12.42 -57.03 -0.71 -9.38 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.13 0.81 8.07 -2.39 -0.02 0.79 16 29 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.04 0.86 8.08 -2.39 -0.02 0.84 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.27 5.66 -2.38 -0.01 2.25 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 2.07 7.06 -2.39 -0.02 2.05 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 37 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 38 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 2.05 8.12 -2.39 -0.02 2.03 16 44 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -71.58 349.66 2.52 -69.06 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.94 Total: 9.22 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 5.58 Total: -30.29 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -6.03 Total: -95.66 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.58 2.52 -69.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399260747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.698 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds