Wall clock time and date at job start Mon Mar 30 2020 02:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40084 * 126.03708 * 2 1 4 4 C 1.30834 * 108.20770 * 180.17238 * 3 2 1 5 5 C 1.39876 * 108.20073 * 359.58566 * 4 3 2 6 6 C 1.34947 * 126.04040 * 179.71450 * 2 1 3 7 7 C 1.50709 * 126.12449 * 359.96194 * 6 2 1 8 8 C 1.52998 * 109.46892 * 265.02002 * 7 6 2 9 9 N 1.46897 * 109.47138 * 180.02562 * 8 7 6 10 10 C 1.46849 * 110.99805 * 45.78639 * 9 8 7 11 11 C 1.53041 * 109.52195 * 185.83825 * 10 9 8 12 12 C 1.53119 * 109.28136 * 300.82695 * 11 10 9 13 13 C 1.52999 * 109.52162 * 177.56047 * 12 11 10 14 14 C 1.50701 * 109.47200 * 65.31661 * 13 12 11 15 15 H 1.08000 * 120.00139 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99839 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00074 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99901 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47077 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46778 * 120.00127 * 18 16 14 21 21 H 1.48502 * 109.46903 * 239.99915 * 18 16 14 22 22 C 1.53118 * 109.16189 * 57.65375 * 12 11 10 23 23 C 1.46845 * 111.00290 * 169.99869 * 9 8 7 24 24 H 1.08995 * 109.47266 * 270.28769 * 1 2 3 25 25 H 1.08996 * 109.47009 * 30.29267 * 1 2 3 26 26 H 1.09011 * 109.46832 * 150.28859 * 1 2 3 27 27 H 1.08002 * 125.90318 * 179.85840 * 4 3 2 28 28 H 1.08001 * 126.04185 * 180.24007 * 5 4 3 29 29 H 1.09002 * 109.47036 * 25.01940 * 7 6 2 30 30 H 1.09000 * 109.46645 * 145.02156 * 7 6 2 31 31 H 1.09002 * 109.47229 * 299.99820 * 8 7 6 32 32 H 1.08998 * 109.47254 * 60.00046 * 8 7 6 33 33 H 1.08994 * 109.46649 * 305.85796 * 10 9 8 34 34 H 1.08999 * 109.45976 * 65.83286 * 10 9 8 35 35 H 1.09006 * 109.50278 * 180.88026 * 11 10 9 36 36 H 1.09000 * 109.50096 * 60.76953 * 11 10 9 37 37 H 1.09004 * 109.51774 * 297.74768 * 12 11 10 38 38 H 1.09006 * 109.47045 * 185.31346 * 13 12 11 39 39 H 1.08998 * 109.46910 * 305.31255 * 13 12 11 40 40 H 0.97007 * 120.00102 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.49834 * 182.40795 * 22 12 11 42 42 H 1.08994 * 109.53336 * 62.30813 * 22 12 11 43 43 H 1.08992 * 109.46481 * 294.17638 * 23 9 8 44 44 H 1.08995 * 109.46105 * 54.15829 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0037 5 6 3.5437 -0.6665 0.0034 6 6 2.2590 -1.0912 0.0054 7 6 1.7974 -2.5258 0.0134 8 6 1.7612 -3.0419 1.4533 9 7 1.3119 -4.4404 1.4610 10 6 2.0035 -5.2211 0.4273 11 6 1.4090 -6.6300 0.3671 12 6 1.5664 -7.3040 1.7329 13 6 0.9198 -8.6901 1.6966 14 6 1.6751 -9.5718 0.7358 15 1 2.5305 -9.1823 0.2039 16 6 1.2740 -10.8757 0.5358 17 7 0.2321 -11.3499 1.1831 18 14 2.2098 -11.9685 -0.6558 19 1 3.3326 -11.2018 -1.2531 20 1 2.7459 -13.1476 0.0707 21 1 1.2944 -12.4245 -1.7324 22 6 0.8789 -6.4463 2.7988 23 6 1.4888 -5.0427 2.7885 24 1 -0.3633 0.0052 1.0276 25 1 -0.3633 0.8873 -0.5184 26 1 -0.3633 -0.8927 -0.5094 27 1 4.4054 1.3711 -0.0069 28 1 4.4211 -1.2963 0.0062 29 1 0.7994 -2.5888 -0.4204 30 1 2.4874 -3.1327 -0.5729 31 1 2.7592 -2.9789 1.8870 32 1 1.0712 -2.4349 2.0395 33 1 1.8802 -4.7332 -0.5396 34 1 3.0644 -5.2846 0.6692 35 1 1.9331 -7.2141 -0.3896 36 1 0.3512 -6.5680 0.1116 37 1 2.6257 -7.4012 1.9711 38 1 0.9485 -9.1307 2.6933 39 1 -0.1159 -8.5994 1.3692 40 1 -0.0504 -12.2671 1.0422 41 1 1.0242 -6.8991 3.7796 42 1 -0.1874 -6.3814 2.5823 43 1 2.5520 -5.1071 3.0194 44 1 0.9914 -4.4254 3.5366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399293446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:15 Heat of formation + Delta-G solvation = 42.767639 kcal Electronic energy + Delta-G solvation = -21381.450034 eV Core-core repulsion = 18333.812082 eV Total energy + Delta-G solvation = -3047.637952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17685 -40.13267 -36.66895 -34.80417 -34.08899 -32.96804 -31.66887 -30.15608 -28.39609 -27.55022 -25.89980 -24.37399 -23.34802 -22.13540 -21.89713 -20.48757 -20.35543 -18.41801 -17.78921 -16.89525 -16.48744 -16.23124 -16.08175 -15.61443 -15.27983 -14.99282 -14.78424 -14.68877 -14.27667 -14.16625 -13.79239 -13.58371 -13.30826 -13.20747 -13.11540 -12.85224 -12.75474 -12.53663 -12.41330 -12.12227 -12.10101 -11.94048 -11.60489 -11.54607 -11.21050 -10.83789 -10.67674 -10.50616 -10.19196 -9.45344 -9.20295 -8.15903 -6.25226 0.90049 1.40512 1.41083 1.53782 1.66632 1.89871 2.43026 2.93492 3.17505 3.71505 3.75774 3.93293 4.01678 4.07916 4.15278 4.20377 4.37019 4.39947 4.44548 4.56352 4.61598 4.62752 4.67623 4.70709 4.80675 4.83561 4.88205 4.93876 4.96777 5.04949 5.14461 5.20213 5.30454 5.40932 5.44704 5.50462 5.60854 5.75807 5.83987 5.91930 6.09255 6.18946 6.22180 6.32828 6.76745 6.91634 7.43272 8.96245 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032589 B = 0.003034 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.968937 B = 9225.690581 C = 9569.812047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.379 5.379 3 N -0.338 5.338 4 C 0.040 3.960 5 C -0.287 4.287 6 C 0.088 3.912 7 C -0.055 4.055 8 C 0.072 3.928 9 N -0.542 5.542 10 C 0.057 3.943 11 C -0.095 4.095 12 C -0.076 4.076 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.061 0.939 16 C -0.004 4.004 17 N -0.937 5.937 18 Si 0.960 3.040 19 H -0.260 1.260 20 H -0.281 1.281 21 H -0.280 1.280 22 C -0.107 4.107 23 C 0.067 3.933 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.206 0.794 28 H 0.158 0.842 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.032 0.968 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.046 0.954 38 H -0.016 1.016 39 H -0.012 1.012 40 H 0.261 0.739 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.033 0.967 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 22.520 -1.854 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.162 5.162 3 N -0.160 5.160 4 C -0.144 4.144 5 C -0.316 4.316 6 C -0.041 4.041 7 C -0.094 4.094 8 C -0.056 4.056 9 N -0.267 5.267 10 C -0.070 4.070 11 C -0.133 4.133 12 C -0.094 4.094 13 C -0.004 4.004 14 C -0.565 4.565 15 H 0.079 0.921 16 C -0.201 4.201 17 N -0.578 5.578 18 Si 0.785 3.215 19 H -0.184 1.184 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.145 4.145 23 C -0.061 4.061 24 H 0.102 0.898 25 H 0.112 0.888 26 H 0.123 0.877 27 H 0.223 0.777 28 H 0.176 0.824 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.002 0.998 39 H 0.006 0.994 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.251 23.402 -1.940 23.590 hybrid contribution 1.490 -1.760 -0.118 2.309 sum 3.740 21.642 -2.059 22.059 Atomic orbital electron populations 1.22126 0.72885 1.05584 1.04451 1.48807 1.07591 1.03120 1.56650 1.77294 1.02847 1.09242 1.26571 1.24304 0.95525 0.95681 0.98918 1.21561 0.96935 0.95327 1.17825 1.21264 0.91516 0.90653 1.00632 1.20416 1.03689 0.87482 0.97828 1.21955 0.99190 0.88496 0.96001 1.62000 1.57858 1.01832 1.05050 1.22222 0.95239 0.93409 0.96145 1.21435 1.00575 0.94447 0.96854 1.21095 0.98217 0.94670 0.95459 1.19016 0.94608 0.92201 0.94565 1.21693 1.13531 0.96779 1.24459 0.92054 1.25961 0.96097 0.99924 0.98072 1.70114 1.27324 1.16231 1.44094 0.85475 0.78814 0.78574 0.78664 1.18387 1.20711 1.20585 1.21592 0.99967 0.94516 0.98396 1.22004 0.98695 0.94894 0.90469 0.89818 0.88807 0.87708 0.77704 0.82419 0.88933 0.88165 0.94447 0.90542 0.88656 0.94950 0.92499 0.93112 0.93514 0.99805 0.99351 0.93002 0.92222 0.92538 0.94877 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 11.27 127.77 1.44 2.60 16 2 N -0.38 -7.59 4.01 -356.02 -1.43 -9.02 16 3 N -0.34 -7.84 12.58 -57.02 -0.72 -8.56 16 4 C 0.04 0.78 12.03 85.24 1.03 1.80 16 5 C -0.29 -5.45 10.72 21.99 0.24 -5.21 16 6 C 0.09 1.68 6.18 41.41 0.26 1.94 16 7 C -0.06 -0.92 4.75 29.85 0.14 -0.78 16 8 C 0.07 1.36 5.26 86.30 0.45 1.82 16 9 N -0.54 -13.25 4.81 -896.38 -4.31 -17.56 16 10 C 0.06 1.51 4.85 86.33 0.42 1.92 16 11 C -0.10 -3.39 5.15 30.65 0.16 -3.23 16 12 C -0.08 -3.05 2.20 -10.71 -0.02 -3.07 16 13 C 0.03 1.74 4.45 29.85 0.13 1.88 16 14 C -0.53 -29.56 8.45 25.60 0.22 -29.35 16 15 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 16 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 17 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 18 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C -0.11 -3.58 5.38 30.65 0.16 -3.41 16 23 C 0.07 1.75 5.42 86.33 0.47 2.22 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.10 1.00 6.98 -2.38 -0.02 0.99 16 27 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 28 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.09 1.42 6.95 -2.39 -0.02 1.40 16 30 H 0.10 1.61 6.21 -2.39 -0.01 1.60 16 31 H 0.04 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 2.08 5.81 -2.39 -0.01 2.07 16 34 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 2.18 7.05 -2.38 -0.02 2.16 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 1.92 8.12 -2.39 -0.02 1.90 16 Total: -1.00 -69.19 347.36 2.36 -66.83 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.95 Total: 9.81 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 5.55 Total: -30.62 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -6.17 Total: -92.27 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.19 2.36 -66.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399293446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.595 kcal (2) G-P(sol) polarization free energy of solvation -69.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds