Wall clock time and date at job start Mon Mar 30 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99755 * 2 1 4 4 H 1.48496 * 109.47425 * 240.00293 * 3 2 1 5 5 H 1.48495 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46603 * 120.00599 * 3 2 1 7 7 C 1.37874 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00396 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.53128 * 109.52354 * 184.99988 * 10 9 7 12 12 C 1.53035 * 109.27861 * 182.43845 * 11 10 9 13 13 N 1.46846 * 109.52178 * 59.17851 * 12 11 10 14 14 C 1.46905 * 110.99687 * 174.16151 * 13 12 11 15 15 H 1.09000 * 108.85386 * 311.97406 * 14 13 12 16 16 C 1.48677 * 108.79588 * 193.46779 * 14 13 12 17 17 C 1.28226 * 136.19636 * 238.26220 * 16 14 13 18 18 C 1.51373 * 121.75547 * 353.54146 * 17 16 14 19 19 C 1.53699 * 106.87552 * 281.81032 * 18 17 16 20 20 C 1.52563 * 109.54528 * 54.43748 * 19 18 17 21 21 C 1.51518 * 106.59812 * 64.38679 * 20 19 18 22 22 C 1.52700 * 112.94799 * 277.91594 * 21 20 19 23 23 C 1.46846 * 111.20000 * 298.25197 * 13 12 11 24 24 C 1.53040 * 109.51997 * 61.74606 * 23 13 12 25 25 H 0.97004 * 119.99599 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47305 * 59.99954 * 9 7 2 27 27 H 1.09005 * 109.47162 * 300.00536 * 9 7 2 28 28 H 1.09001 * 109.57355 * 305.15203 * 10 9 7 29 29 H 1.09007 * 109.50304 * 62.49822 * 11 10 9 30 30 H 1.08999 * 109.53199 * 302.40053 * 11 10 9 31 31 H 1.09004 * 109.46264 * 299.15884 * 12 11 10 32 32 H 1.08998 * 109.46152 * 179.19894 * 12 11 10 33 33 H 1.08003 * 111.90382 * 58.23354 * 16 14 13 34 34 H 1.08004 * 119.12244 * 173.56709 * 17 16 14 35 35 H 1.09002 * 109.96914 * 162.46660 * 18 17 16 36 36 H 1.09001 * 109.96937 * 41.14871 * 18 17 16 37 37 H 1.09005 * 109.45663 * 294.41423 * 19 18 17 38 38 H 1.09004 * 109.44577 * 174.45503 * 19 18 17 39 39 H 1.09001 * 110.02412 * 305.11350 * 20 19 18 40 40 H 1.08997 * 110.11022 * 183.70337 * 20 19 18 41 41 H 1.08997 * 108.79005 * 157.02671 * 21 20 19 42 42 H 1.08997 * 108.78760 * 38.81097 * 21 20 19 43 43 H 1.09004 * 109.35594 * 202.29498 * 22 21 20 44 44 H 1.09004 * 109.35615 * 82.71090 * 22 21 20 45 45 H 1.08997 * 109.46167 * 181.75479 * 23 13 12 46 46 H 1.08993 * 109.46621 * 301.73091 * 23 13 12 47 47 H 1.08995 * 109.50279 * 180.87768 * 24 23 13 48 48 H 1.09006 * 109.53327 * 60.77893 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4851 -4.9852 -0.1263 12 6 2.4793 -6.1470 -0.0646 13 7 3.2098 -6.1006 1.2085 14 6 4.0738 -7.2786 1.3628 15 1 3.4954 -8.1726 1.1300 16 6 4.5307 -7.3558 2.7755 17 6 5.6595 -7.3712 3.3836 18 6 6.9698 -7.4453 2.6292 19 6 7.1562 -8.9097 2.2015 20 6 5.9289 -9.3744 1.4236 21 6 5.8779 -8.5425 0.1583 22 6 5.2419 -7.1709 0.3727 23 6 3.9853 -4.8596 1.3308 24 6 3.0360 -3.6593 1.3107 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.9320 -3.5553 -0.8403 29 1 0.9541 -5.0109 -1.0780 30 1 0.7703 -5.0740 0.6918 31 1 3.1849 -6.0656 -0.8914 32 1 1.9397 -7.0911 -0.1396 33 1 3.7011 -7.4131 3.4647 34 1 5.6758 -7.3306 4.4627 35 1 7.7906 -7.1394 3.2780 36 1 6.9298 -6.8027 1.7496 37 1 7.2827 -9.5332 3.0867 38 1 8.0401 -8.9934 1.5692 39 1 5.0280 -9.2102 2.0149 40 1 6.0224 -10.4309 1.1722 41 1 5.3026 -9.0823 -0.5939 42 1 6.8936 -8.4044 -0.2122 43 1 4.8739 -6.7903 -0.5801 44 1 5.9896 -6.4840 0.7694 45 1 4.5393 -4.8686 2.2694 46 1 4.6838 -4.7842 0.4975 47 1 3.6131 -2.7377 1.3858 48 1 2.3460 -3.7263 2.1519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399294569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:35 Heat of formation + Delta-G solvation = 5.681139 kcal Electronic energy + Delta-G solvation = -22738.821728 eV Core-core repulsion = 19793.115928 eV Total energy + Delta-G solvation = -2945.705800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23688 -37.90126 -34.68291 -33.15093 -32.54031 -30.79773 -30.27700 -27.76308 -27.44476 -25.36202 -23.38028 -22.64485 -21.58389 -20.79203 -20.25017 -18.67815 -18.10236 -16.42329 -16.16563 -15.84967 -14.87792 -14.74945 -14.44018 -14.27046 -14.06273 -13.62799 -13.43741 -13.29820 -12.64019 -12.26311 -12.19658 -11.96787 -11.88747 -11.81048 -11.68566 -11.52345 -11.21611 -10.99746 -10.85057 -10.76855 -10.60430 -10.52535 -10.29669 -10.18518 -9.91355 -9.86976 -9.48080 -9.05173 -8.99472 -8.83271 -8.29010 -7.95823 -5.94116 -3.95465 2.26050 3.35812 3.40350 3.42578 4.19749 4.50089 4.59108 4.69690 4.75707 4.86337 4.96561 5.09936 5.16499 5.24059 5.39712 5.40523 5.41307 5.51907 5.56880 5.63724 5.73294 5.74987 5.79286 5.85529 5.87758 5.90652 5.93929 6.01542 6.07322 6.16916 6.19176 6.25398 6.30521 6.39593 6.49239 6.57235 6.66073 6.74163 6.95445 7.04504 7.16777 7.25385 7.43760 7.47348 7.74235 7.91621 8.07008 8.50231 9.10997 9.67745 11.17231 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029989 B = 0.003723 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.439655 B = 7519.586077 C = 7927.282580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.059 3.941 13 N -0.528 5.528 14 C 0.128 3.872 15 H 0.083 0.917 16 C -0.132 4.132 17 C -0.148 4.148 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.114 4.114 22 C -0.161 4.161 23 C 0.056 3.944 24 C -0.100 4.100 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.029 0.971 47 H 0.071 0.929 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.114 -18.877 3.371 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.149 4.149 12 C -0.069 4.069 13 N -0.251 5.251 14 C 0.020 3.980 15 H 0.101 0.899 16 C -0.150 4.150 17 C -0.167 4.167 18 C -0.147 4.147 19 C -0.149 4.149 20 C -0.170 4.170 21 C -0.152 4.152 22 C -0.199 4.199 23 C -0.071 4.071 24 C -0.138 4.138 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.047 0.953 47 H 0.089 0.911 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.568 -18.751 3.749 22.349 hybrid contribution 0.996 1.005 -0.593 1.534 sum 12.564 -17.746 3.155 21.971 Atomic orbital electron populations 1.69960 1.06016 1.26522 1.51135 1.25014 0.94794 0.99090 0.95573 0.86721 0.79624 0.83478 0.78542 1.20363 1.21373 1.20290 1.21224 0.92873 0.91074 1.50073 0.92796 1.19109 0.93626 0.91060 0.97059 1.21225 0.97841 0.94733 0.96134 1.21692 0.97534 0.94298 1.01414 1.22129 0.96140 0.99305 0.89325 1.62149 1.27309 1.01441 1.34248 1.20176 0.92291 0.94321 0.91213 0.89879 1.20965 0.97738 0.99654 0.96669 1.21944 0.93950 1.01784 0.99051 1.21329 0.95794 0.97139 1.00395 1.21583 0.97789 0.95870 0.99650 1.21565 0.99740 0.98579 0.97098 1.21196 1.00605 0.95723 0.97725 1.22562 0.99289 0.97805 1.00282 1.22180 0.95364 0.89765 0.99804 1.21551 0.97869 0.95597 0.98743 0.93069 0.96833 0.96547 0.93160 0.92217 0.91648 0.95157 0.91781 0.89772 0.87343 0.91913 0.89814 0.92464 0.92199 0.89927 0.92197 0.92844 0.92442 0.91610 0.90534 0.91610 0.95300 0.91084 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.49 8.45 -34.44 -0.29 -14.78 16 8 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 9 C 0.03 0.74 4.45 -27.89 -0.12 0.61 16 10 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 11 C -0.11 -1.96 5.38 -26.65 -0.14 -2.10 16 12 C 0.06 0.86 5.16 -3.84 -0.02 0.84 16 13 N -0.53 -7.68 4.54 -228.94 -1.04 -8.72 16 14 C 0.13 1.52 1.64 -69.57 -0.11 1.40 16 15 H 0.08 0.96 7.38 -51.93 -0.38 0.58 16 16 C -0.13 -1.49 5.55 -36.29 -0.20 -1.70 16 17 C -0.15 -1.51 8.96 -35.00 -0.31 -1.82 16 18 C -0.11 -1.01 5.76 -27.19 -0.16 -1.17 16 19 C -0.11 -0.92 5.48 -26.59 -0.15 -1.06 16 20 C -0.13 -1.15 5.65 -27.70 -0.16 -1.31 16 21 C -0.11 -1.05 5.23 -27.63 -0.14 -1.20 16 22 C -0.16 -1.77 3.62 -26.63 -0.10 -1.86 16 23 C 0.06 0.89 4.64 -3.83 -0.02 0.87 16 24 C -0.10 -1.92 5.15 -26.65 -0.14 -2.05 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.44 6.54 -51.93 -0.34 0.10 16 32 H 0.06 0.84 7.98 -51.93 -0.41 0.43 16 33 H 0.08 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.11 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.84 4.48 -51.93 -0.23 0.61 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.46 7.85 -51.93 -0.41 0.05 16 39 H 0.08 0.79 4.29 -51.93 -0.22 0.57 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.51 7.62 -51.93 -0.40 0.11 16 43 H 0.07 0.79 6.16 -51.93 -0.32 0.47 16 44 H 0.08 0.88 4.50 -51.93 -0.23 0.64 16 45 H 0.07 1.00 7.21 -51.93 -0.37 0.62 16 46 H 0.03 0.45 6.89 -51.93 -0.36 0.09 16 47 H 0.07 1.45 7.05 -51.93 -0.37 1.09 16 48 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -29.14 342.35 -11.15 -40.29 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.63 Total: -1.39 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -2.36 Total: -25.67 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.30 Total: -35.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.14 -11.15 -40.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399294569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.972 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds