Wall clock time and date at job start Mon Mar 30 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99755 * 2 1 4 4 H 1.48496 * 109.47425 * 240.00293 * 3 2 1 5 5 H 1.48495 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46603 * 120.00599 * 3 2 1 7 7 C 1.37874 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00396 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.53128 * 109.52354 * 184.99988 * 10 9 7 12 12 C 1.53035 * 109.27861 * 182.43845 * 11 10 9 13 13 N 1.46846 * 109.52178 * 59.17851 * 12 11 10 14 14 C 1.46905 * 110.99687 * 174.16151 * 13 12 11 15 15 H 1.09000 * 108.85386 * 311.97406 * 14 13 12 16 16 C 1.48677 * 108.79588 * 193.46779 * 14 13 12 17 17 C 1.28226 * 136.19636 * 238.26220 * 16 14 13 18 18 C 1.51373 * 121.75547 * 353.54146 * 17 16 14 19 19 C 1.53699 * 106.87552 * 281.81032 * 18 17 16 20 20 C 1.52563 * 109.54528 * 54.43748 * 19 18 17 21 21 C 1.51518 * 106.59812 * 64.38679 * 20 19 18 22 22 C 1.52700 * 112.94799 * 277.91594 * 21 20 19 23 23 C 1.46846 * 111.20000 * 298.25197 * 13 12 11 24 24 C 1.53040 * 109.51997 * 61.74606 * 23 13 12 25 25 H 0.97004 * 119.99599 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47305 * 59.99954 * 9 7 2 27 27 H 1.09005 * 109.47162 * 300.00536 * 9 7 2 28 28 H 1.09001 * 109.57355 * 305.15203 * 10 9 7 29 29 H 1.09007 * 109.50304 * 62.49822 * 11 10 9 30 30 H 1.08999 * 109.53199 * 302.40053 * 11 10 9 31 31 H 1.09004 * 109.46264 * 299.15884 * 12 11 10 32 32 H 1.08998 * 109.46152 * 179.19894 * 12 11 10 33 33 H 1.08003 * 111.90382 * 58.23354 * 16 14 13 34 34 H 1.08004 * 119.12244 * 173.56709 * 17 16 14 35 35 H 1.09002 * 109.96914 * 162.46660 * 18 17 16 36 36 H 1.09001 * 109.96937 * 41.14871 * 18 17 16 37 37 H 1.09005 * 109.45663 * 294.41423 * 19 18 17 38 38 H 1.09004 * 109.44577 * 174.45503 * 19 18 17 39 39 H 1.09001 * 110.02412 * 305.11350 * 20 19 18 40 40 H 1.08997 * 110.11022 * 183.70337 * 20 19 18 41 41 H 1.08997 * 108.79005 * 157.02671 * 21 20 19 42 42 H 1.08997 * 108.78760 * 38.81097 * 21 20 19 43 43 H 1.09004 * 109.35594 * 202.29498 * 22 21 20 44 44 H 1.09004 * 109.35615 * 82.71090 * 22 21 20 45 45 H 1.08997 * 109.46167 * 181.75479 * 23 13 12 46 46 H 1.08993 * 109.46621 * 301.73091 * 23 13 12 47 47 H 1.08995 * 109.50279 * 180.87768 * 24 23 13 48 48 H 1.09006 * 109.53327 * 60.77893 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4851 -4.9852 -0.1263 12 6 2.4793 -6.1470 -0.0646 13 7 3.2098 -6.1006 1.2085 14 6 4.0738 -7.2786 1.3628 15 1 3.4954 -8.1726 1.1300 16 6 4.5307 -7.3558 2.7755 17 6 5.6595 -7.3712 3.3836 18 6 6.9698 -7.4453 2.6292 19 6 7.1562 -8.9097 2.2015 20 6 5.9289 -9.3744 1.4236 21 6 5.8779 -8.5425 0.1583 22 6 5.2419 -7.1709 0.3727 23 6 3.9853 -4.8596 1.3308 24 6 3.0360 -3.6593 1.3107 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.9320 -3.5553 -0.8403 29 1 0.9541 -5.0109 -1.0780 30 1 0.7703 -5.0740 0.6918 31 1 3.1849 -6.0656 -0.8914 32 1 1.9397 -7.0911 -0.1396 33 1 3.7011 -7.4131 3.4647 34 1 5.6758 -7.3306 4.4627 35 1 7.7906 -7.1394 3.2780 36 1 6.9298 -6.8027 1.7496 37 1 7.2827 -9.5332 3.0867 38 1 8.0401 -8.9934 1.5692 39 1 5.0280 -9.2102 2.0149 40 1 6.0224 -10.4309 1.1722 41 1 5.3026 -9.0823 -0.5939 42 1 6.8936 -8.4044 -0.2122 43 1 4.8739 -6.7903 -0.5801 44 1 5.9896 -6.4840 0.7694 45 1 4.5393 -4.8686 2.2694 46 1 4.6838 -4.7842 0.4975 47 1 3.6131 -2.7377 1.3858 48 1 2.3460 -3.7263 2.1519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399294569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:34 Heat of formation + Delta-G solvation = -9.113249 kcal Electronic energy + Delta-G solvation = -22739.463261 eV Core-core repulsion = 19793.115928 eV Total energy + Delta-G solvation = -2946.347333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22527 -39.08823 -36.17626 -34.43711 -33.91656 -32.06262 -31.64158 -29.41239 -28.20221 -26.72188 -24.97357 -24.02516 -22.75894 -21.75077 -21.40611 -20.12487 -18.99702 -18.41699 -17.37505 -16.63894 -16.53955 -15.95750 -15.69020 -15.22722 -15.12617 -14.92520 -14.72628 -14.65818 -14.15301 -13.63507 -13.50444 -13.34304 -13.11750 -12.87891 -12.73780 -12.62717 -12.51811 -12.47655 -12.34517 -12.14852 -12.00950 -11.78918 -11.68362 -11.51422 -11.25728 -11.02526 -10.88114 -10.73704 -10.60467 -10.51297 -9.86746 -9.09595 -8.16895 -6.26700 1.39196 1.41666 1.42200 1.49851 2.41938 3.09310 3.16255 3.78622 3.84565 4.01054 4.07019 4.08463 4.09990 4.14242 4.24612 4.36299 4.37610 4.43410 4.46302 4.60050 4.65411 4.69523 4.75207 4.84912 4.91201 4.96790 4.99984 5.03398 5.06445 5.11793 5.17851 5.19113 5.21259 5.33480 5.37377 5.41442 5.44541 5.46325 5.50856 5.57778 5.62272 5.78304 5.81859 5.89913 6.08681 6.24395 6.29636 6.37166 6.89261 7.41590 8.94914 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029989 B = 0.003723 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.439655 B = 7519.586077 C = 7927.282580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.034 3.966 10 C -0.073 4.073 11 C -0.107 4.107 12 C 0.067 3.933 13 N -0.539 5.539 14 C 0.134 3.866 15 H 0.089 0.911 16 C -0.146 4.146 17 C -0.137 4.137 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.132 4.132 21 C -0.110 4.110 22 C -0.156 4.156 23 C 0.072 3.928 24 C -0.094 4.094 25 H 0.262 0.738 26 H -0.014 1.014 27 H -0.014 1.014 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.054 0.946 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.425 -20.053 3.469 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.092 4.092 11 C -0.145 4.145 12 C -0.061 4.061 13 N -0.263 5.263 14 C 0.027 3.973 15 H 0.107 0.893 16 C -0.165 4.165 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.169 4.169 21 C -0.148 4.148 22 C -0.194 4.194 23 C -0.056 4.056 24 C -0.132 4.132 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.005 0.995 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.894 -19.948 3.848 24.613 hybrid contribution 0.246 1.351 -0.594 1.496 sum 14.140 -18.598 3.254 23.588 Atomic orbital electron populations 1.70105 1.07812 1.27615 1.52138 1.25962 0.95698 1.03227 0.95050 0.85573 0.78328 0.78442 0.79159 1.19204 1.20978 1.19193 1.21623 0.93352 0.92162 1.49717 0.92215 1.18999 0.93995 0.93088 0.94179 1.21069 0.96856 0.94344 0.96905 1.21601 0.97847 0.93918 1.01102 1.22033 0.95664 0.98661 0.89735 1.62093 1.28117 1.01886 1.34195 1.20163 0.92297 0.92983 0.91906 0.89300 1.20876 0.97843 1.01643 0.96129 1.22142 0.94096 0.99778 0.99621 1.21363 0.95445 0.97804 1.00159 1.21571 0.97928 0.95086 1.00034 1.21560 0.99553 0.99131 0.96680 1.21159 1.00812 0.94674 0.98183 1.22501 0.98781 0.98904 0.99261 1.21938 0.94353 0.88875 1.00451 1.21424 0.97832 0.96854 0.97090 0.92940 0.99610 0.99540 0.93431 0.91973 0.92821 0.94487 0.89536 0.90894 0.86467 0.90962 0.90511 0.91853 0.91299 0.90776 0.91121 0.92491 0.91798 0.92585 0.90893 0.90756 0.94840 0.92766 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.53 -30.61 8.45 25.60 0.22 -30.39 16 8 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 9 C 0.03 1.87 4.45 29.85 0.13 2.00 16 10 C -0.07 -3.09 2.20 -10.71 -0.02 -3.11 16 11 C -0.11 -3.78 5.38 30.65 0.16 -3.61 16 12 C 0.07 1.86 5.16 86.33 0.45 2.31 16 13 N -0.54 -15.02 4.54 -878.22 -3.99 -19.00 16 14 C 0.13 2.93 1.64 43.71 0.07 3.00 16 15 H 0.09 1.86 7.38 -2.39 -0.02 1.84 16 16 C -0.15 -3.08 5.55 27.70 0.15 -2.92 16 17 C -0.14 -2.50 8.96 28.53 0.26 -2.24 16 18 C -0.11 -1.76 5.76 30.30 0.17 -1.58 16 19 C -0.11 -1.48 5.48 30.68 0.17 -1.31 16 20 C -0.13 -1.93 5.65 29.96 0.17 -1.76 16 21 C -0.11 -1.74 5.23 30.01 0.16 -1.58 16 22 C -0.16 -3.09 3.62 30.66 0.11 -2.98 16 23 C 0.07 2.19 4.64 86.33 0.40 2.59 16 24 C -0.09 -3.67 5.15 30.65 0.16 -3.51 16 25 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 26 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 27 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.01 6.54 -2.39 -0.02 0.99 16 32 H 0.09 2.07 7.98 -2.39 -0.02 2.05 16 33 H 0.07 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.12 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.36 4.48 -2.39 -0.01 1.35 16 37 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 0.84 7.85 -2.38 -0.02 0.82 16 39 H 0.07 1.24 4.29 -2.39 -0.01 1.23 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.94 7.62 -2.39 -0.02 0.93 16 43 H 0.06 1.23 6.16 -2.39 -0.01 1.21 16 44 H 0.07 1.52 4.50 -2.38 -0.01 1.51 16 45 H 0.07 2.16 7.21 -2.39 -0.02 2.14 16 46 H 0.03 1.00 6.89 -2.39 -0.02 0.99 16 47 H 0.05 2.26 7.05 -2.39 -0.02 2.24 16 48 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -63.64 342.35 2.45 -61.19 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.90 Total: 13.56 kcal Atomic # 6 Polarization: -48.00 SS G_CDS: 3.22 Total: -44.78 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -3.70 Total: -77.04 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.64 2.45 -61.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399294569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.080 kcal (2) G-P(sol) polarization free energy of solvation -63.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds