Wall clock time and date at job start Mon Mar 30 2020 02:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34948 * 126.03747 * 2 1 4 4 C 1.35319 * 107.74754 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.04487 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47198 * 89.99424 * 5 4 3 7 7 N 1.46906 * 109.47072 * 180.02562 * 6 5 4 8 8 C 1.46850 * 110.99915 * 45.79054 * 7 6 5 9 9 C 1.53032 * 109.52098 * 185.84118 * 8 7 6 10 10 C 1.53119 * 109.28205 * 300.81949 * 9 8 7 11 11 C 1.52998 * 109.52473 * 177.56210 * 10 9 8 12 12 C 1.50695 * 109.47326 * 65.31857 * 11 10 9 13 13 H 1.07996 * 119.99790 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99928 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99978 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99639 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47287 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47201 * 119.99746 * 16 14 12 19 19 H 1.48505 * 109.46838 * 239.99851 * 16 14 12 20 20 C 1.53124 * 109.15796 * 57.65213 * 10 9 8 21 21 C 1.46844 * 110.99887 * 170.00138 * 7 6 5 22 22 C 1.39870 * 107.91839 * 0.26230 * 4 3 2 23 23 N 1.30844 * 108.20343 * 359.56019 * 22 4 3 24 24 H 1.09002 * 109.47534 * 89.99401 * 1 2 3 25 25 H 1.08995 * 109.47221 * 209.99738 * 1 2 3 26 26 H 1.09004 * 109.47195 * 329.99756 * 1 2 3 27 27 H 1.08000 * 126.12702 * 0.04794 * 3 2 1 28 28 H 1.09002 * 109.46594 * 329.99929 * 5 4 3 29 29 H 1.08996 * 109.47202 * 209.99786 * 5 4 3 30 30 H 1.08993 * 109.47007 * 60.00472 * 6 5 4 31 31 H 1.08996 * 109.47340 * 300.00278 * 6 5 4 32 32 H 1.09005 * 109.46314 * 305.85713 * 8 7 6 33 33 H 1.08998 * 109.46244 * 65.82281 * 8 7 6 34 34 H 1.09004 * 109.50441 * 180.87586 * 9 8 7 35 35 H 1.08999 * 109.50499 * 60.76414 * 9 8 7 36 36 H 1.09001 * 109.51997 * 297.75401 * 10 9 8 37 37 H 1.09002 * 109.46532 * 185.31771 * 11 10 9 38 38 H 1.09001 * 109.46925 * 305.31177 * 11 10 9 39 39 H 0.96997 * 119.99673 * 180.02562 * 15 14 12 40 40 H 1.08997 * 109.50392 * 182.40446 * 20 10 9 41 41 H 1.09000 * 109.49712 * 62.29080 * 20 10 9 42 42 H 1.08995 * 109.46267 * 294.17336 * 21 7 6 43 43 H 1.09000 * 109.46172 * 54.15831 * 21 7 6 44 44 H 1.08002 * 125.90131 * 179.73964 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5452 -0.0002 6 6 5.1826 1.8417 1.4424 7 7 6.3757 2.6987 1.4427 8 6 6.2296 3.8046 0.4875 9 6 7.5415 4.5885 0.4082 10 6 7.8909 5.1314 1.7966 11 6 9.2324 5.8646 1.7362 12 6 9.0994 7.0843 0.8613 13 1 8.1528 7.3133 0.3945 14 6 10.1865 7.9071 0.6558 15 7 11.3393 7.6278 1.2238 16 14 10.0213 9.4194 -0.4283 17 1 8.6317 9.5093 -0.9441 18 1 10.3346 10.6344 0.3660 19 1 10.9666 9.3163 -1.5690 20 6 7.9895 3.9639 2.7825 21 6 6.6646 3.1981 2.7930 22 6 3.5346 -0.7321 -0.0070 23 7 2.2891 -1.1328 -0.0007 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.9281 2.1193 0.0007 28 1 4.5441 2.4804 -0.5134 29 1 5.5820 1.0344 -0.5145 30 1 5.4065 0.9065 1.9555 31 1 4.3686 2.3525 1.9567 32 1 5.9854 3.4046 -0.4966 33 1 5.4300 4.4672 0.8187 34 1 7.4279 5.4185 -0.2892 35 1 8.3388 3.9298 0.0638 36 1 7.1126 5.8204 2.1247 37 1 9.5258 6.1685 2.7411 38 1 9.9909 5.2007 1.3215 39 1 12.1039 8.2069 1.0795 40 1 8.1960 4.3478 3.7815 41 1 8.7939 3.2955 2.4754 42 1 5.8631 3.8635 3.1133 43 1 6.7367 2.3576 3.4833 44 1 4.4053 -1.3710 -0.0130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399296035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:18 Heat of formation + Delta-G solvation = 62.652974 kcal Electronic energy + Delta-G solvation = -21118.487948 eV Core-core repulsion = 18071.712289 eV Total energy + Delta-G solvation = -3046.775659 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38866 -38.78782 -35.25213 -33.68704 -32.59098 -31.49316 -30.31680 -29.00340 -27.59041 -26.05328 -24.06385 -22.90070 -21.87862 -21.29881 -20.59213 -19.89144 -18.84673 -17.04297 -16.20966 -15.83825 -15.49640 -14.90929 -14.65315 -14.44090 -14.31493 -13.77112 -13.39207 -13.28803 -13.19235 -12.93621 -12.79165 -12.60152 -12.10082 -11.81939 -11.66221 -11.44317 -11.26262 -11.01815 -10.73253 -10.59256 -10.57751 -10.49974 -10.21017 -9.86237 -9.63367 -9.46090 -8.99706 -8.81611 -8.50984 -8.29237 -7.97609 -5.94053 -3.95158 1.66911 2.29412 2.61227 3.33576 3.41189 3.44670 4.15598 4.30590 4.50242 4.61227 4.77483 4.88386 5.02694 5.08259 5.19437 5.26762 5.41138 5.42597 5.51231 5.56457 5.63298 5.69068 5.79453 5.80905 5.95527 6.04754 6.14040 6.20190 6.22653 6.32894 6.47002 6.52403 6.65934 6.74757 6.78399 7.05382 7.17443 7.26324 7.44321 7.48436 7.48741 7.75425 7.92590 8.07522 8.50769 9.11819 9.68072 11.17376 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032854 B = 0.002866 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.049004 B = 9766.019370 C =10248.439968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.053 3.947 4 C -0.228 4.228 5 C -0.045 4.045 6 C 0.063 3.937 7 N -0.537 5.537 8 C 0.049 3.951 9 C -0.100 4.100 10 C -0.081 4.081 11 C 0.027 3.973 12 C -0.512 4.512 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.112 4.112 21 C 0.061 3.939 22 C 0.054 3.946 23 N -0.302 5.302 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.171 0.829 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.013 0.987 38 H 0.017 0.983 39 H 0.258 0.742 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.064 0.936 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.618 -14.306 -1.223 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.092 4.092 4 C -0.240 4.240 5 C -0.083 4.083 6 C -0.065 4.065 7 N -0.262 5.262 8 C -0.078 4.078 9 C -0.138 4.138 10 C -0.100 4.100 11 C -0.010 4.010 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.150 4.150 21 C -0.067 4.067 22 C -0.132 4.132 23 N -0.123 5.123 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.189 0.811 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -20.016 -15.530 -1.348 25.370 hybrid contribution -0.234 2.137 -0.266 2.166 sum -20.250 -13.393 -1.614 24.332 Atomic orbital electron populations 1.21824 0.74406 1.04388 1.03264 1.48439 1.06540 1.03928 1.57410 1.22356 0.90995 0.93289 1.02598 1.20136 0.94502 0.94041 1.15328 1.20061 0.93537 0.97967 0.96781 1.22085 0.90784 0.97279 0.96330 1.62023 1.35825 1.20701 1.07650 1.22322 0.98355 0.91401 0.95722 1.21553 0.95195 0.98521 0.98535 1.21230 1.00697 0.94758 0.93301 1.19124 0.90548 0.94462 0.96835 1.21297 0.96159 1.08626 1.28958 0.92683 1.25027 0.95495 0.97919 0.96144 1.69978 1.01046 1.38310 1.44265 0.86605 0.78032 0.83258 0.80506 1.19813 1.21163 1.21101 1.21689 0.95921 0.97621 0.99736 1.22081 0.97806 0.97602 0.89236 1.23858 0.95094 0.94723 0.99498 1.77339 1.01832 1.08319 1.24850 0.90862 0.89409 0.89561 0.81138 0.90989 0.90151 0.91118 0.95643 0.90916 0.95748 0.91056 0.91867 0.93192 0.96833 0.96492 0.93188 0.92280 0.91593 0.95596 0.91787 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.47 59.84 0.69 1.23 16 2 N -0.38 -3.68 4.01 -68.17 -0.27 -3.95 16 3 C 0.05 0.50 11.40 -17.22 -0.20 0.30 16 4 C -0.23 -2.38 5.35 -105.05 -0.56 -2.94 16 5 C -0.04 -0.47 4.95 -27.88 -0.14 -0.61 16 6 C 0.06 0.76 5.26 -3.82 -0.02 0.74 16 7 N -0.54 -7.80 4.81 -234.67 -1.13 -8.93 16 8 C 0.05 0.75 4.85 -3.83 -0.02 0.73 16 9 C -0.10 -1.88 5.15 -26.65 -0.14 -2.02 16 10 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 11 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 12 C -0.51 -14.33 8.45 -34.44 -0.29 -14.62 16 13 H 0.05 1.50 7.08 -52.49 -0.37 1.13 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 16 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.11 -1.97 5.38 -26.65 -0.14 -2.12 16 21 C 0.06 0.91 5.42 -3.84 -0.02 0.89 16 22 C 0.05 0.58 11.96 -17.36 -0.21 0.38 16 23 N -0.30 -3.58 12.58 30.63 0.39 -3.19 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.07 0.75 6.21 -51.93 -0.32 0.43 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.07 0.98 5.81 -51.93 -0.30 0.68 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 1.42 7.05 -51.93 -0.37 1.05 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 44 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -32.52 349.91 -9.18 -41.70 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -7.68 Total: -3.34 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -1.47 Total: -17.86 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.28 Total: -42.45 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.52 -9.18 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399296035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.350 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds