Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00028 * 2 1 4 4 H 1.48496 * 109.47354 * 270.00494 * 3 2 1 5 5 H 1.48501 * 109.47110 * 30.00576 * 3 2 1 6 6 H 1.48501 * 109.47236 * 150.00506 * 3 2 1 7 7 C 1.37871 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00377 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00295 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47396 * 179.97438 * 9 7 2 11 11 C 1.53121 * 109.52622 * 184.99902 * 10 9 7 12 12 C 1.53036 * 109.27999 * 182.37789 * 11 10 9 13 13 N 1.46849 * 109.52183 * 59.18332 * 12 11 10 14 14 C 1.46901 * 110.99649 * 174.16073 * 13 12 11 15 15 C 1.53000 * 109.46769 * 169.99929 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 C 1.29446 * 117.96189 * 94.99816 * 16 15 14 18 18 C 1.50067 * 124.07912 * 180.44576 * 17 16 15 19 19 C 1.53026 * 110.14299 * 342.87016 * 18 17 16 20 20 C 1.53397 * 108.44012 * 49.43526 * 19 18 17 21 21 C 1.50061 * 117.96400 * 274.73533 * 16 15 14 22 22 C 1.46848 * 111.19595 * 298.25529 * 13 12 11 23 23 C 1.53036 * 109.52325 * 61.74468 * 22 13 12 24 24 H 0.96997 * 119.99884 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47095 * 59.99571 * 9 7 2 26 26 H 1.09004 * 109.47169 * 300.00095 * 9 7 2 27 27 H 1.09001 * 109.52691 * 305.12736 * 10 9 7 28 28 H 1.09001 * 109.50276 * 62.43395 * 11 10 9 29 29 H 1.09006 * 109.50060 * 302.32122 * 11 10 9 30 30 H 1.09001 * 109.46105 * 299.16399 * 12 11 10 31 31 H 1.09006 * 109.45028 * 179.19053 * 12 11 10 32 32 H 1.09002 * 109.47401 * 49.99636 * 14 13 12 33 33 H 1.09001 * 109.46874 * 289.99649 * 14 13 12 34 34 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 35 35 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 36 36 H 1.08007 * 117.96262 * 0.46693 * 17 16 15 37 37 H 1.09001 * 109.35561 * 103.06964 * 18 17 16 38 38 H 1.08995 * 109.35917 * 222.66477 * 18 17 16 39 39 H 1.09003 * 109.64127 * 169.12067 * 19 18 17 40 40 H 1.08990 * 109.64396 * 289.75050 * 19 18 17 41 41 H 1.09000 * 109.64026 * 52.24544 * 20 19 18 42 42 H 1.08995 * 109.64385 * 172.66911 * 20 19 18 43 43 H 1.09001 * 109.35473 * 283.09811 * 21 16 15 44 44 H 1.09000 * 109.36004 * 42.68033 * 21 16 15 45 45 H 1.08997 * 109.46035 * 181.75979 * 22 13 12 46 46 H 1.09006 * 109.46342 * 301.72876 * 22 13 12 47 47 H 1.09005 * 109.50033 * 180.87700 * 23 22 13 48 48 H 1.09001 * 109.50223 * 60.76533 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5476 -2.6397 0.1242 12 6 6.0565 -4.0818 0.0641 13 7 5.6506 -4.6927 -1.2081 14 6 6.2386 -6.0303 -1.3609 15 6 5.6038 -6.7320 -2.5633 16 6 6.2074 -8.1038 -2.7205 17 6 5.5862 -9.1053 -2.1849 18 6 6.0679 -10.5251 -2.2486 19 6 7.1140 -10.6775 -3.3551 20 6 8.1599 -9.5676 -3.1901 21 6 7.4881 -8.2248 -3.4932 22 6 4.1880 -4.7438 -1.3298 23 6 3.6234 -3.3215 -1.3113 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.5860 -3.1769 0.8395 28 1 5.8357 -2.1915 1.0751 29 1 5.9812 -2.0663 -0.6953 30 1 5.6334 -4.6510 0.8918 31 1 7.1440 -4.0863 0.1385 32 1 6.0525 -6.6142 -0.4595 33 1 7.3131 -5.9388 -1.5193 34 1 4.5292 -6.8234 -2.4049 35 1 5.7898 -6.1481 -3.4646 36 1 4.6635 -8.9067 -1.6598 37 1 6.5117 -10.7993 -1.2916 38 1 5.2246 -11.1838 -2.4556 39 1 7.5967 -11.6512 -3.2713 40 1 6.6333 -10.5861 -4.3289 41 1 8.5381 -9.5695 -2.1678 42 1 8.9827 -9.7332 -3.8855 43 1 7.2742 -8.1566 -4.5598 44 1 8.1595 -7.4146 -3.2089 45 1 3.9184 -5.2294 -2.2676 46 1 3.7737 -5.3099 -0.4956 47 1 2.5366 -3.3605 -1.3860 48 1 4.0266 -2.7589 -2.1533 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399477522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -20.608017 kcal Electronic energy + Delta-G solvation = -21694.068645 eV Core-core repulsion = 18747.222861 eV Total energy + Delta-G solvation = -2946.845783 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.38969 -38.46215 -35.18433 -33.12812 -31.95883 -30.97867 -30.44155 -29.10633 -27.14480 -24.31944 -23.41763 -22.91351 -22.31839 -21.00648 -20.18775 -18.96186 -17.77291 -16.70392 -16.20200 -15.30266 -15.02276 -14.76277 -14.37983 -14.21785 -14.06818 -13.73631 -13.50961 -13.19584 -13.04851 -12.67776 -12.63187 -12.55350 -12.29263 -11.88645 -11.82925 -11.62369 -11.32604 -11.09683 -10.98982 -10.81746 -10.70501 -10.62513 -10.50266 -10.31751 -10.08896 -9.73171 -9.53606 -9.21610 -8.95724 -8.86477 -8.48511 -8.06131 -5.99407 -3.96083 2.07876 3.34398 3.41548 3.45952 4.07744 4.45344 4.49944 4.53147 4.63834 4.92781 5.01978 5.13646 5.15654 5.20494 5.31352 5.32735 5.34210 5.35047 5.43921 5.53950 5.57740 5.60248 5.65051 5.71856 5.72240 5.77817 5.84577 5.87458 5.98100 6.02959 6.04159 6.07695 6.11822 6.22811 6.39132 6.50000 6.53655 6.62287 6.88947 6.89740 6.99327 7.08232 7.32274 7.34419 7.42448 7.54850 7.86364 8.60146 9.05911 9.64072 11.14087 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.040025 B = 0.002896 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.399212 B = 9667.589536 C = 9997.507300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.114 4.114 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.064 3.936 15 C -0.093 4.093 16 C -0.114 4.114 17 C -0.162 4.162 18 C -0.088 4.088 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.083 4.083 22 C 0.049 3.951 23 C -0.101 4.101 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.012 0.988 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.026 0.974 47 H 0.077 0.923 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.269 -19.242 -5.492 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.092 4.092 11 C -0.152 4.152 12 C -0.068 4.068 13 N -0.262 5.262 14 C -0.064 4.064 15 C -0.130 4.130 16 C -0.115 4.115 17 C -0.180 4.180 18 C -0.125 4.125 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.120 4.120 22 C -0.078 4.078 23 C -0.139 4.139 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.095 0.905 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.286 -18.815 -5.858 25.565 hybrid contribution -0.062 0.466 0.738 0.875 sum 16.224 -18.349 -5.120 25.022 Atomic orbital electron populations 1.69918 1.06279 1.26735 1.51652 1.25034 0.94702 0.99122 0.94780 0.86794 0.80362 0.83762 0.78455 1.20369 1.21565 1.19060 1.21161 0.89553 0.94267 1.50107 0.90992 1.19611 0.97043 0.91852 0.96101 1.21050 0.92463 0.98743 0.96897 1.21723 0.97579 0.94548 1.01358 1.22069 0.99274 0.96196 0.89218 1.62043 1.10108 1.19714 1.34382 1.22026 0.99224 0.88759 0.96358 1.20941 0.99835 0.93036 0.99231 1.20845 0.96725 0.94930 0.98987 1.21916 1.00405 0.94251 1.01458 1.20407 0.98499 0.94582 0.99008 1.21609 0.96734 0.98442 0.99046 1.21627 0.97647 0.94680 1.01783 1.20423 0.94398 0.97665 0.99522 1.22318 0.86517 0.98867 1.00095 1.21562 1.00997 0.93010 0.98319 0.92877 0.96821 0.97007 0.92510 0.92190 0.91641 0.95371 0.91711 0.95345 0.91152 0.90899 0.90458 0.88057 0.91199 0.91328 0.91954 0.91794 0.91821 0.91820 0.90912 0.90948 0.90886 0.95525 0.90487 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.51 -14.59 9.00 -34.44 -0.31 -14.90 16 8 H 0.07 2.19 7.32 -52.49 -0.38 1.80 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.46 2.20 -90.50 -0.20 -1.66 16 11 C -0.11 -1.92 5.38 -26.65 -0.14 -2.06 16 12 C 0.06 0.88 5.42 -3.83 -0.02 0.86 16 13 N -0.54 -7.81 4.81 -234.66 -1.13 -8.94 16 14 C 0.06 0.77 5.25 -3.82 -0.02 0.75 16 15 C -0.09 -1.02 4.47 -27.88 -0.12 -1.14 16 16 C -0.11 -1.11 5.09 -100.94 -0.51 -1.63 16 17 C -0.16 -1.55 9.37 -35.90 -0.34 -1.89 16 18 C -0.09 -0.69 6.12 -28.18 -0.17 -0.86 16 19 C -0.12 -0.86 6.01 -26.51 -0.16 -1.02 16 20 C -0.12 -0.88 6.02 -26.43 -0.16 -1.04 16 21 C -0.08 -0.70 5.80 -28.10 -0.16 -0.86 16 22 C 0.05 0.77 4.85 -3.83 -0.02 0.75 16 23 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.07 0.84 5.86 -51.93 -0.30 0.53 16 35 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.10 1.00 7.74 -52.48 -0.41 0.60 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 45 H 0.07 1.04 5.81 -51.93 -0.30 0.74 16 46 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 1.60 7.06 -51.93 -0.37 1.23 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -30.02 359.37 -11.58 -41.60 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -9.30 Total: -2.82 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -2.67 Total: -25.26 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.35 Total: -36.35 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.02 -11.58 -41.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399477522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.992 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds