Wall clock time and date at job start Mon Mar 30 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00028 * 2 1 4 4 H 1.48496 * 109.47354 * 270.00494 * 3 2 1 5 5 H 1.48501 * 109.47110 * 30.00576 * 3 2 1 6 6 H 1.48501 * 109.47236 * 150.00506 * 3 2 1 7 7 C 1.37871 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00377 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00295 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47396 * 179.97438 * 9 7 2 11 11 C 1.53121 * 109.52622 * 184.99902 * 10 9 7 12 12 C 1.53036 * 109.27999 * 182.37789 * 11 10 9 13 13 N 1.46849 * 109.52183 * 59.18332 * 12 11 10 14 14 C 1.46901 * 110.99649 * 174.16073 * 13 12 11 15 15 C 1.53000 * 109.46769 * 169.99929 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 C 1.29446 * 117.96189 * 94.99816 * 16 15 14 18 18 C 1.50067 * 124.07912 * 180.44576 * 17 16 15 19 19 C 1.53026 * 110.14299 * 342.87016 * 18 17 16 20 20 C 1.53397 * 108.44012 * 49.43526 * 19 18 17 21 21 C 1.50061 * 117.96400 * 274.73533 * 16 15 14 22 22 C 1.46848 * 111.19595 * 298.25529 * 13 12 11 23 23 C 1.53036 * 109.52325 * 61.74468 * 22 13 12 24 24 H 0.96997 * 119.99884 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47095 * 59.99571 * 9 7 2 26 26 H 1.09004 * 109.47169 * 300.00095 * 9 7 2 27 27 H 1.09001 * 109.52691 * 305.12736 * 10 9 7 28 28 H 1.09001 * 109.50276 * 62.43395 * 11 10 9 29 29 H 1.09006 * 109.50060 * 302.32122 * 11 10 9 30 30 H 1.09001 * 109.46105 * 299.16399 * 12 11 10 31 31 H 1.09006 * 109.45028 * 179.19053 * 12 11 10 32 32 H 1.09002 * 109.47401 * 49.99636 * 14 13 12 33 33 H 1.09001 * 109.46874 * 289.99649 * 14 13 12 34 34 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 35 35 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 36 36 H 1.08007 * 117.96262 * 0.46693 * 17 16 15 37 37 H 1.09001 * 109.35561 * 103.06964 * 18 17 16 38 38 H 1.08995 * 109.35917 * 222.66477 * 18 17 16 39 39 H 1.09003 * 109.64127 * 169.12067 * 19 18 17 40 40 H 1.08990 * 109.64396 * 289.75050 * 19 18 17 41 41 H 1.09000 * 109.64026 * 52.24544 * 20 19 18 42 42 H 1.08995 * 109.64385 * 172.66911 * 20 19 18 43 43 H 1.09001 * 109.35473 * 283.09811 * 21 16 15 44 44 H 1.09000 * 109.36004 * 42.68033 * 21 16 15 45 45 H 1.08997 * 109.46035 * 181.75979 * 22 13 12 46 46 H 1.09006 * 109.46342 * 301.72876 * 22 13 12 47 47 H 1.09005 * 109.50033 * 180.87700 * 23 22 13 48 48 H 1.09001 * 109.50223 * 60.76533 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5476 -2.6397 0.1242 12 6 6.0565 -4.0818 0.0641 13 7 5.6506 -4.6927 -1.2081 14 6 6.2386 -6.0303 -1.3609 15 6 5.6038 -6.7320 -2.5633 16 6 6.2074 -8.1038 -2.7205 17 6 5.5862 -9.1053 -2.1849 18 6 6.0679 -10.5251 -2.2486 19 6 7.1140 -10.6775 -3.3551 20 6 8.1599 -9.5676 -3.1901 21 6 7.4881 -8.2248 -3.4932 22 6 4.1880 -4.7438 -1.3298 23 6 3.6234 -3.3215 -1.3113 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.5860 -3.1769 0.8395 28 1 5.8357 -2.1915 1.0751 29 1 5.9812 -2.0663 -0.6953 30 1 5.6334 -4.6510 0.8918 31 1 7.1440 -4.0863 0.1385 32 1 6.0525 -6.6142 -0.4595 33 1 7.3131 -5.9388 -1.5193 34 1 4.5292 -6.8234 -2.4049 35 1 5.7898 -6.1481 -3.4646 36 1 4.6635 -8.9067 -1.6598 37 1 6.5117 -10.7993 -1.2916 38 1 5.2246 -11.1838 -2.4556 39 1 7.5967 -11.6512 -3.2713 40 1 6.6333 -10.5861 -4.3289 41 1 8.5381 -9.5695 -2.1678 42 1 8.9827 -9.7332 -3.8855 43 1 7.2742 -8.1566 -4.5598 44 1 8.1595 -7.4146 -3.2089 45 1 3.9184 -5.2294 -2.2676 46 1 3.7737 -5.3099 -0.4956 47 1 2.5366 -3.3605 -1.3860 48 1 4.0266 -2.7589 -2.1533 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399477522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:57 Heat of formation + Delta-G solvation = -36.072978 kcal Electronic energy + Delta-G solvation = -21694.739256 eV Core-core repulsion = 18747.222861 eV Total energy + Delta-G solvation = -2947.516394 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43199 -39.40665 -36.56780 -34.71093 -33.47296 -31.75372 -31.60746 -30.61913 -28.40898 -25.73973 -24.39876 -24.08753 -23.31344 -22.23497 -21.42391 -20.47736 -18.87702 -18.44967 -17.18736 -16.41445 -16.26921 -16.01826 -15.68533 -15.29397 -14.97321 -14.87154 -14.80239 -14.58409 -14.43375 -14.03178 -13.54212 -13.42496 -13.40089 -13.33368 -13.06316 -12.74346 -12.63060 -12.46340 -12.35152 -12.09127 -11.91529 -11.80921 -11.67489 -11.62369 -11.29848 -11.24431 -10.99750 -10.85834 -10.80684 -10.71468 -9.61780 -9.22862 -8.26798 -6.29043 1.33504 1.35761 1.37049 1.49304 2.37461 2.97072 3.08658 3.77025 3.83474 3.96653 4.01836 4.03475 4.08380 4.19655 4.22003 4.39453 4.41390 4.48011 4.53229 4.57248 4.60002 4.67984 4.71526 4.74135 4.77158 4.81879 4.93039 4.96006 5.01506 5.05129 5.09239 5.10651 5.14083 5.19483 5.22549 5.23307 5.31634 5.37328 5.40526 5.48938 5.52223 5.70824 5.73579 5.79062 6.15158 6.16778 6.23520 6.33807 6.78055 7.34703 8.90001 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.040025 B = 0.002896 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.399212 B = 9667.589536 C = 9997.507300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.519 4.519 8 H 0.033 0.967 9 C -0.005 4.005 10 C -0.072 4.072 11 C -0.107 4.107 12 C 0.063 3.937 13 N -0.543 5.543 14 C 0.069 3.931 15 C -0.089 4.089 16 C -0.120 4.120 17 C -0.167 4.167 18 C -0.089 4.089 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.083 4.083 22 C 0.061 3.939 23 C -0.097 4.097 24 H 0.264 0.736 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.027 0.973 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.021 0.979 47 H 0.044 0.956 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.309 -19.650 -5.829 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.557 4.557 8 H 0.051 0.949 9 C -0.043 4.043 10 C -0.090 4.090 11 C -0.145 4.145 12 C -0.065 4.065 13 N -0.268 5.268 14 C -0.058 4.058 15 C -0.126 4.126 16 C -0.121 4.121 17 C -0.186 4.186 18 C -0.126 4.126 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.120 4.120 22 C -0.067 4.067 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.346 -19.245 -6.194 27.982 hybrid contribution -1.096 0.516 0.847 1.478 sum 18.250 -18.729 -5.347 26.691 Atomic orbital electron populations 1.70074 1.08248 1.27943 1.53287 1.26010 0.95592 1.03449 0.94495 0.85678 0.79514 0.78481 0.79099 1.19326 1.21123 1.17074 1.21466 0.92018 0.92868 1.49332 0.94902 1.19567 0.93936 0.94679 0.96073 1.20978 0.95184 0.96054 0.96816 1.21636 0.94375 0.96465 1.02015 1.22062 1.00738 0.94511 0.89161 1.62038 1.08896 1.21398 1.34445 1.22048 0.99797 0.87311 0.96648 1.20868 0.99244 0.93810 0.98682 1.20878 0.97488 0.94139 0.99547 1.22066 1.00073 0.95326 1.01086 1.20449 0.99040 0.93466 0.99656 1.21617 0.96499 0.99144 0.98483 1.21629 0.97918 0.94011 1.02019 1.20449 0.93699 0.98478 0.99392 1.22129 0.87600 0.96320 1.00641 1.21439 0.99140 0.95265 0.97634 0.92684 0.96579 0.96645 0.94061 0.91108 0.91493 0.95536 0.89036 0.95506 0.89746 0.91925 0.90683 0.88980 0.90707 0.90791 0.90624 0.92085 0.91996 0.90568 0.90662 0.90717 0.89564 0.96117 0.93720 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.10 13.96 21.44 0.30 -60.80 16 2 C 0.00 0.03 5.47 84.65 0.46 0.50 16 3 Si 0.95 45.41 27.47 68.60 1.88 47.30 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 7 C -0.52 -30.43 9.00 25.60 0.23 -30.20 16 8 H 0.03 2.12 7.32 -2.91 -0.02 2.10 16 9 C -0.01 -0.25 3.52 29.85 0.11 -0.14 16 10 C -0.07 -2.87 2.20 -10.71 -0.02 -2.90 16 11 C -0.11 -3.39 5.38 30.65 0.16 -3.22 16 12 C 0.06 1.68 5.42 86.33 0.47 2.15 16 13 N -0.54 -14.75 4.81 -896.34 -4.31 -19.06 16 14 C 0.07 1.52 5.25 86.30 0.45 1.97 16 15 C -0.09 -1.82 4.47 29.85 0.13 -1.69 16 16 C -0.12 -2.16 5.09 -15.10 -0.08 -2.24 16 17 C -0.17 -3.01 9.37 27.03 0.25 -2.75 16 18 C -0.09 -1.26 6.12 29.66 0.18 -1.07 16 19 C -0.12 -1.46 6.01 30.74 0.18 -1.27 16 20 C -0.12 -1.45 6.02 30.79 0.19 -1.27 16 21 C -0.08 -1.22 5.80 29.71 0.17 -1.05 16 22 C 0.06 1.88 4.85 86.33 0.42 2.29 16 23 C -0.10 -3.73 5.15 30.65 0.16 -3.57 16 24 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 25 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 26 H 0.02 0.72 7.57 -2.39 -0.02 0.71 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 29 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 2.02 8.12 -2.38 -0.02 2.00 16 32 H 0.03 0.61 8.08 -2.39 -0.02 0.59 16 33 H 0.08 1.66 8.13 -2.39 -0.02 1.64 16 34 H 0.06 1.40 5.86 -2.39 -0.01 1.39 16 35 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 36 H 0.09 1.79 7.74 -2.91 -0.02 1.76 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 41 H 0.06 0.79 8.12 -2.39 -0.02 0.77 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 45 H 0.09 2.43 5.81 -2.39 -0.01 2.41 16 46 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.04 1.97 7.06 -2.38 -0.02 1.95 16 48 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -65.55 359.37 2.17 -63.38 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.82 Total: 13.64 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 3.47 Total: -44.46 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -4.01 Total: -79.86 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.30 kcal Total: -65.55 2.17 -63.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399477522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.312 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds