Wall clock time and date at job start Mon Mar 30 2020 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47636 * 2 1 4 4 C 1.53004 * 109.47007 * 119.99857 * 2 1 3 5 5 C 1.50705 * 109.46985 * 183.09731 * 4 2 1 6 6 H 1.07996 * 120.00131 * 2.01087 * 5 4 2 7 7 C 1.37881 * 119.99822 * 182.00438 * 5 4 2 8 8 N 1.31521 * 119.99965 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46686 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.47037 * 299.99947 * 9 7 5 12 12 H 1.48494 * 109.47286 * 59.99969 * 9 7 5 13 13 N 1.46904 * 109.47416 * 239.99537 * 2 1 3 14 14 C 1.46839 * 110.99676 * 70.81978 * 13 2 1 15 15 C 1.53038 * 109.52648 * 174.16416 * 14 13 2 16 16 C 1.53120 * 109.27756 * 59.17543 * 15 14 13 17 17 C 1.53118 * 109.16317 * 302.35150 * 16 15 14 18 18 H 1.08994 * 109.50332 * 297.67302 * 17 16 15 19 19 C 1.50697 * 109.49953 * 177.59217 * 17 16 15 20 20 C 1.35316 * 126.13010 * 274.68381 * 19 17 16 21 21 C 1.39873 * 107.92236 * 179.90952 * 20 19 17 22 22 N 1.30840 * 108.19740 * 0.36762 * 21 20 19 23 23 N 1.34948 * 126.12851 * 95.00767 * 19 17 16 24 24 C 1.46510 * 126.03280 * 359.92925 * 23 19 17 25 25 C 1.46853 * 110.99828 * 306.61524 * 13 2 1 26 26 H 1.08997 * 109.47029 * 60.00489 * 1 2 3 27 27 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47321 * 299.99937 * 1 2 3 29 29 H 1.08996 * 109.47317 * 63.10202 * 4 2 1 30 30 H 1.08994 * 109.47081 * 303.09731 * 4 2 1 31 31 H 0.96992 * 119.99933 * 359.97438 * 8 7 5 32 32 H 1.09001 * 109.46608 * 294.17750 * 14 13 2 33 33 H 1.09004 * 109.46635 * 54.14731 * 14 13 2 34 34 H 1.09002 * 109.50649 * 179.12347 * 15 14 13 35 35 H 1.09004 * 109.49884 * 299.23906 * 15 14 13 36 36 H 1.08999 * 109.51729 * 62.25913 * 16 15 14 37 37 H 1.09002 * 109.52120 * 182.37982 * 16 15 14 38 38 H 1.08002 * 126.03930 * 0.04030 * 20 19 17 39 39 H 1.07996 * 125.89874 * 180.14255 * 21 20 19 40 40 H 1.09004 * 109.46805 * 90.00660 * 24 23 19 41 41 H 1.08995 * 109.46828 * 210.00492 * 24 23 19 42 42 H 1.08995 * 109.47086 * 330.00951 * 24 23 19 43 43 H 1.08995 * 109.46040 * 305.84947 * 25 13 2 44 44 H 1.09000 * 109.46344 * 65.81814 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5450 -0.6551 1.2883 6 1 4.0822 -0.1215 0.5182 7 6 4.2362 -1.2758 2.3072 8 7 3.5820 -1.9259 3.2448 9 14 6.1017 -1.1932 2.3559 10 1 6.5992 -1.9353 3.5421 11 1 6.6566 -1.8045 1.1216 12 1 6.5324 0.2253 2.4424 13 7 2.0197 -0.6926 -1.1994 14 6 1.7705 0.1055 -2.4065 15 6 2.4201 -0.5756 -3.6132 16 6 1.8334 -1.9803 -3.7773 17 6 2.0636 -2.7749 -2.4888 18 1 3.1341 -2.8814 -2.3134 19 6 1.4370 -4.1391 -2.6203 20 6 0.1453 -4.4517 -2.3658 21 6 -0.0237 -5.8179 -2.6134 22 7 1.1272 -6.3095 -2.9950 23 7 2.0650 -5.2692 -3.0072 24 6 3.4781 -5.3869 -3.3757 25 6 1.4242 -2.0300 -1.3148 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7227 -1.7637 1.2220 30 1 1.6320 -0.2405 2.1383 31 1 2.6133 -1.9685 3.2197 32 1 0.6963 0.1890 -2.5714 33 1 2.1964 1.1007 -2.2783 34 1 2.2217 0.0090 -4.5115 35 1 3.4963 -0.6469 -3.4550 36 1 0.7638 -1.9075 -3.9742 37 1 2.3235 -2.4848 -4.6100 38 1 -0.6204 -3.7668 -2.0325 39 1 -0.9443 -6.3720 -2.5045 40 1 4.0669 -5.6189 -2.4881 41 1 3.5971 -6.1842 -4.1092 42 1 3.8217 -4.4452 -3.8036 43 1 1.5987 -2.5859 -0.3937 44 1 0.3516 -1.9365 -1.4848 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411181349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:47 Heat of formation + Delta-G solvation = 66.012490 kcal Electronic energy + Delta-G solvation = -22716.684783 eV Core-core repulsion = 19670.054803 eV Total energy + Delta-G solvation = -3046.629980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22779 -38.96902 -35.22557 -33.22971 -32.72230 -31.84550 -29.56421 -28.38008 -26.97264 -26.65028 -24.12441 -23.40450 -22.73119 -21.06802 -20.37631 -19.32896 -18.64042 -16.81469 -16.51812 -15.59991 -15.36663 -14.59282 -14.49493 -14.10241 -13.75815 -13.67986 -13.54689 -13.36464 -13.06253 -12.92114 -12.68762 -12.41518 -12.34370 -12.00161 -11.62994 -11.36358 -11.09944 -10.90296 -10.70003 -10.69024 -10.60164 -10.43441 -10.33944 -10.05237 -10.00355 -9.40520 -9.09439 -8.45469 -8.36566 -8.20967 -7.53040 -6.20874 -3.86269 1.99856 2.62257 2.97390 3.49763 3.51867 3.70602 4.30269 4.62962 4.64757 4.73633 4.97297 5.03066 5.18509 5.21036 5.25224 5.36187 5.44173 5.54965 5.58483 5.64865 5.71789 5.75273 5.79283 5.80808 5.90757 5.92372 5.99130 6.02452 6.09526 6.22385 6.26906 6.39938 6.47048 6.55944 6.62055 6.77918 6.83762 7.12164 7.28392 7.45390 7.79100 7.83343 7.89020 8.39491 8.66760 9.04259 9.82325 11.19284 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.006130 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.210293 B = 4566.359057 C = 5253.715230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.096 3.904 3 H 0.071 0.929 4 C 0.016 3.984 5 C -0.569 4.569 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.923 5.923 9 Si 1.066 2.934 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.290 1.290 13 N -0.509 5.509 14 C 0.051 3.949 15 C -0.114 4.114 16 C -0.105 4.105 17 C -0.025 4.025 18 H 0.091 0.909 19 C 0.107 3.893 20 C -0.275 4.275 21 C 0.045 3.955 22 N -0.307 5.307 23 N -0.372 5.372 24 C 0.099 3.901 25 C 0.074 3.926 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.010 0.990 30 H 0.007 0.993 31 H 0.265 0.735 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.143 0.857 39 H 0.180 0.820 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 -1.287 -15.232 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.012 4.012 3 H 0.089 0.911 4 C -0.021 4.021 5 C -0.608 4.608 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.560 5.560 9 Si 0.896 3.104 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.217 1.217 13 N -0.232 5.232 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.143 4.143 17 C -0.045 4.045 18 H 0.109 0.891 19 C -0.022 4.022 20 C -0.304 4.304 21 C -0.140 4.140 22 N -0.128 5.128 23 N -0.154 5.154 24 C -0.043 4.043 25 C -0.054 4.054 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.161 0.839 39 H 0.197 0.803 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.374 -2.901 -14.732 15.201 hybrid contribution -2.698 1.231 -0.661 3.039 sum -5.073 -1.669 -15.393 16.293 Atomic orbital electron populations 1.22548 0.99703 1.01418 1.00815 1.21728 0.89935 0.98146 0.91374 0.91106 1.19322 0.97521 0.94706 0.90512 1.21922 0.91146 1.36183 1.11544 0.92822 1.25745 1.06564 0.94022 0.93089 1.70789 1.09926 1.40960 1.34365 0.83579 0.75017 0.76060 0.75786 1.21166 1.21696 1.21683 1.61948 1.58415 1.01489 1.01355 1.22101 0.97512 0.97321 0.90785 1.21572 1.01317 0.95048 0.97263 1.21569 1.01155 0.95740 0.95872 1.19872 1.00831 0.87378 0.96433 0.89057 1.21090 0.93175 0.89579 0.98338 1.21193 0.96508 0.96569 1.16176 1.23759 0.96624 0.94471 0.99195 1.77293 0.98650 1.11494 1.25372 1.48446 1.09118 1.05396 1.52416 1.21853 0.76485 1.03970 1.01970 1.21961 0.95043 0.90770 0.97656 0.93906 0.92789 0.92588 0.97196 0.97457 0.92430 0.95662 0.91145 0.91853 0.90899 0.91926 0.92403 0.83892 0.80318 0.90480 0.89538 0.89485 0.89517 0.95016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 8.44 37.16 0.31 -2.79 16 2 C 0.10 1.91 2.27 -67.71 -0.15 1.75 16 3 H 0.07 1.44 7.97 -51.93 -0.41 1.03 16 4 C 0.02 0.41 3.68 -27.88 -0.10 0.31 16 5 C -0.57 -15.85 8.79 -34.44 -0.30 -16.15 16 6 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.01 0.23 5.46 -17.82 -0.10 0.13 16 8 N -0.92 -28.46 13.65 55.43 0.76 -27.71 16 9 Si 1.07 25.72 29.90 -169.99 -5.08 20.63 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.51 -9.25 4.26 -226.69 -0.97 -10.22 16 14 C 0.05 0.75 5.14 -3.84 -0.02 0.73 16 15 C -0.11 -1.42 6.09 -26.65 -0.16 -1.58 16 16 C -0.11 -1.30 5.27 -26.61 -0.14 -1.44 16 17 C -0.02 -0.36 2.36 -91.69 -0.22 -0.58 16 18 H 0.09 1.46 7.50 -51.93 -0.39 1.07 16 19 C 0.11 1.61 5.87 -82.27 -0.48 1.13 16 20 C -0.28 -4.02 9.97 -40.01 -0.40 -4.42 16 21 C 0.04 0.63 12.03 -17.36 -0.21 0.42 16 22 N -0.31 -4.84 12.57 30.63 0.39 -4.46 16 23 N -0.37 -5.53 4.01 -63.88 -0.26 -5.79 16 24 C 0.10 1.11 11.06 59.85 0.66 1.77 16 25 C 0.07 1.28 3.40 -3.83 -0.01 1.26 16 26 H 0.04 0.63 6.84 -51.93 -0.36 0.27 16 27 H 0.05 0.90 6.46 -51.93 -0.34 0.56 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.01 0.26 6.12 -51.93 -0.32 -0.06 16 30 H 0.01 0.19 8.07 -51.93 -0.42 -0.23 16 31 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 32 H 0.03 0.35 6.90 -51.93 -0.36 0.00 16 33 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.14 1.91 7.33 -52.49 -0.38 1.52 16 39 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.82 7.55 -51.93 -0.39 0.43 16 43 H 0.09 1.80 6.19 -51.93 -0.32 1.48 16 44 H 0.03 0.51 5.66 -51.93 -0.29 0.22 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -32.40 340.17 -8.64 -41.04 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.28 Total: 0.85 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.32 Total: -19.47 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.08 Total: -48.17 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.40 -8.64 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411181349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.049 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds