Wall clock time and date at job start Mon Mar 30 2020 02:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47636 * 2 1 4 4 C 1.53004 * 109.47007 * 119.99857 * 2 1 3 5 5 C 1.50705 * 109.46985 * 183.09731 * 4 2 1 6 6 H 1.07996 * 120.00131 * 2.01087 * 5 4 2 7 7 C 1.37881 * 119.99822 * 182.00438 * 5 4 2 8 8 N 1.31521 * 119.99965 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46686 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.47037 * 299.99947 * 9 7 5 12 12 H 1.48494 * 109.47286 * 59.99969 * 9 7 5 13 13 N 1.46904 * 109.47416 * 239.99537 * 2 1 3 14 14 C 1.46839 * 110.99676 * 70.81978 * 13 2 1 15 15 C 1.53038 * 109.52648 * 174.16416 * 14 13 2 16 16 C 1.53120 * 109.27756 * 59.17543 * 15 14 13 17 17 C 1.53118 * 109.16317 * 302.35150 * 16 15 14 18 18 H 1.08994 * 109.50332 * 297.67302 * 17 16 15 19 19 C 1.50697 * 109.49953 * 177.59217 * 17 16 15 20 20 C 1.35316 * 126.13010 * 274.68381 * 19 17 16 21 21 C 1.39873 * 107.92236 * 179.90952 * 20 19 17 22 22 N 1.30840 * 108.19740 * 0.36762 * 21 20 19 23 23 N 1.34948 * 126.12851 * 95.00767 * 19 17 16 24 24 C 1.46510 * 126.03280 * 359.92925 * 23 19 17 25 25 C 1.46853 * 110.99828 * 306.61524 * 13 2 1 26 26 H 1.08997 * 109.47029 * 60.00489 * 1 2 3 27 27 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47321 * 299.99937 * 1 2 3 29 29 H 1.08996 * 109.47317 * 63.10202 * 4 2 1 30 30 H 1.08994 * 109.47081 * 303.09731 * 4 2 1 31 31 H 0.96992 * 119.99933 * 359.97438 * 8 7 5 32 32 H 1.09001 * 109.46608 * 294.17750 * 14 13 2 33 33 H 1.09004 * 109.46635 * 54.14731 * 14 13 2 34 34 H 1.09002 * 109.50649 * 179.12347 * 15 14 13 35 35 H 1.09004 * 109.49884 * 299.23906 * 15 14 13 36 36 H 1.08999 * 109.51729 * 62.25913 * 16 15 14 37 37 H 1.09002 * 109.52120 * 182.37982 * 16 15 14 38 38 H 1.08002 * 126.03930 * 0.04030 * 20 19 17 39 39 H 1.07996 * 125.89874 * 180.14255 * 21 20 19 40 40 H 1.09004 * 109.46805 * 90.00660 * 24 23 19 41 41 H 1.08995 * 109.46828 * 210.00492 * 24 23 19 42 42 H 1.08995 * 109.47086 * 330.00951 * 24 23 19 43 43 H 1.08995 * 109.46040 * 305.84947 * 25 13 2 44 44 H 1.09000 * 109.46344 * 65.81814 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5450 -0.6551 1.2883 6 1 4.0822 -0.1215 0.5182 7 6 4.2362 -1.2758 2.3072 8 7 3.5820 -1.9259 3.2448 9 14 6.1017 -1.1932 2.3559 10 1 6.5992 -1.9353 3.5421 11 1 6.6566 -1.8045 1.1216 12 1 6.5324 0.2253 2.4424 13 7 2.0197 -0.6926 -1.1994 14 6 1.7705 0.1055 -2.4065 15 6 2.4201 -0.5756 -3.6132 16 6 1.8334 -1.9803 -3.7773 17 6 2.0636 -2.7749 -2.4888 18 1 3.1341 -2.8814 -2.3134 19 6 1.4370 -4.1391 -2.6203 20 6 0.1453 -4.4517 -2.3658 21 6 -0.0237 -5.8179 -2.6134 22 7 1.1272 -6.3095 -2.9950 23 7 2.0650 -5.2692 -3.0072 24 6 3.4781 -5.3869 -3.3757 25 6 1.4242 -2.0300 -1.3148 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7227 -1.7637 1.2220 30 1 1.6320 -0.2405 2.1383 31 1 2.6133 -1.9685 3.2197 32 1 0.6963 0.1890 -2.5714 33 1 2.1964 1.1007 -2.2783 34 1 2.2217 0.0090 -4.5115 35 1 3.4963 -0.6469 -3.4550 36 1 0.7638 -1.9075 -3.9742 37 1 2.3235 -2.4848 -4.6100 38 1 -0.6204 -3.7668 -2.0325 39 1 -0.9443 -6.3720 -2.5045 40 1 4.0669 -5.6189 -2.4881 41 1 3.5971 -6.1842 -4.1092 42 1 3.8217 -4.4452 -3.8036 43 1 1.5987 -2.5859 -0.3937 44 1 0.3516 -1.9365 -1.4848 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411181349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:46 Heat of formation + Delta-G solvation = 45.896150 kcal Electronic energy + Delta-G solvation = -22717.557093 eV Core-core repulsion = 19670.054803 eV Total energy + Delta-G solvation = -3047.502290 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34025 -40.29677 -36.71236 -34.84478 -34.11091 -33.06755 -31.03374 -29.56606 -28.79726 -27.63066 -25.54769 -24.89961 -24.39051 -22.15675 -21.67206 -20.61342 -19.91736 -18.76934 -17.86358 -16.94600 -16.43071 -15.83817 -15.67385 -15.55598 -15.46626 -15.04830 -14.91465 -14.78543 -14.32744 -14.17823 -13.96081 -13.52043 -13.32608 -13.25945 -13.05610 -12.97402 -12.96176 -12.54802 -12.19229 -12.09208 -11.92936 -11.78922 -11.67742 -11.64858 -11.31795 -11.05579 -10.58027 -10.44144 -10.20351 -9.48681 -8.92739 -8.54026 -6.19320 0.87443 1.53067 1.60801 1.61989 1.80345 1.87385 2.62853 2.99752 3.29981 3.57214 3.68633 3.83952 3.88849 4.09286 4.16235 4.24186 4.30830 4.34910 4.37265 4.38216 4.46706 4.59283 4.62169 4.70932 4.72863 4.77727 4.84135 4.85817 4.94317 5.02788 5.06062 5.12137 5.13858 5.17006 5.25084 5.31874 5.47872 5.53822 5.72708 6.05345 6.13685 6.34914 6.38305 6.47079 6.72862 6.75793 7.58150 8.86603 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.006130 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.210293 B = 4566.359057 C = 5253.715230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 H 0.066 0.934 4 C 0.020 3.980 5 C -0.570 4.570 6 H 0.052 0.948 7 C -0.048 4.048 8 N -0.951 5.951 9 Si 1.112 2.888 10 H -0.291 1.291 11 H -0.272 1.272 12 H -0.269 1.269 13 N -0.530 5.530 14 C 0.050 3.950 15 C -0.108 4.108 16 C -0.096 4.096 17 C -0.016 4.016 18 H 0.076 0.924 19 C 0.095 3.905 20 C -0.288 4.288 21 C 0.044 3.956 22 N -0.334 5.334 23 N -0.380 5.380 24 C 0.090 3.910 25 C 0.085 3.915 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.055 0.945 29 H -0.012 1.012 30 H -0.016 1.016 31 H 0.251 0.749 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.152 0.848 39 H 0.210 0.790 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.039 0.961 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.933 -0.488 -17.743 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.006 4.006 3 H 0.085 0.915 4 C -0.017 4.017 5 C -0.608 4.608 6 H 0.070 0.930 7 C -0.244 4.244 8 N -0.591 5.591 9 Si 0.935 3.065 10 H -0.217 1.217 11 H -0.198 1.198 12 H -0.195 1.195 13 N -0.254 5.254 14 C -0.078 4.078 15 C -0.146 4.146 16 C -0.134 4.134 17 C -0.037 4.037 18 H 0.094 0.906 19 C -0.034 4.034 20 C -0.317 4.317 21 C -0.141 4.141 22 N -0.156 5.156 23 N -0.162 5.162 24 C -0.050 4.050 25 C -0.044 4.044 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.006 0.994 30 H 0.002 0.998 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.169 0.831 39 H 0.227 0.773 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.057 0.943 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.298 -2.089 -17.273 17.550 hybrid contribution -2.758 0.987 0.134 2.933 sum -5.056 -1.101 -17.139 17.903 Atomic orbital electron populations 1.22404 0.97108 1.01641 1.02230 1.21449 0.92003 0.96990 0.90132 0.91536 1.19223 0.96203 0.93857 0.92458 1.22246 0.92736 1.34978 1.10846 0.92987 1.27222 1.10827 0.93476 0.92826 1.70927 1.09117 1.43164 1.35899 0.82995 0.70063 0.77245 0.76241 1.21666 1.19770 1.19471 1.61834 1.59187 1.02172 1.02172 1.22216 0.98714 0.97044 0.89809 1.21564 1.00451 0.95182 0.97357 1.21532 1.01855 0.95370 0.94686 1.19756 0.99471 0.87556 0.96867 0.90604 1.21214 0.93629 0.89817 0.98734 1.21444 0.96723 0.97219 1.16305 1.24293 0.97277 0.94477 0.98023 1.77246 0.99471 1.12343 1.26490 1.48735 1.10071 1.05045 1.52342 1.22111 0.74902 1.05669 1.02331 1.21764 0.95964 0.90132 0.96514 0.91044 0.93138 0.92567 0.99366 0.99781 0.94017 0.94240 0.90973 0.88693 0.91816 0.91185 0.90625 0.83054 0.77326 0.90963 0.87810 0.87732 0.94258 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.66 8.44 71.98 0.61 -5.06 16 2 C 0.10 4.08 2.27 44.91 0.10 4.18 16 3 H 0.07 2.68 7.97 -2.39 -0.02 2.66 16 4 C 0.02 1.02 3.68 29.85 0.11 1.13 16 5 C -0.57 -32.37 8.79 25.60 0.23 -32.14 16 6 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 7 C -0.05 -2.84 5.46 84.65 0.46 -2.38 16 8 N -0.95 -60.63 13.65 21.45 0.29 -60.34 16 9 Si 1.11 51.83 29.90 68.60 2.05 53.88 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.53 -18.89 4.26 -871.12 -3.71 -22.61 16 14 C 0.05 1.32 5.14 86.33 0.44 1.77 16 15 C -0.11 -2.32 6.09 30.65 0.19 -2.14 16 16 C -0.10 -2.10 5.27 30.67 0.16 -1.94 16 17 C -0.02 -0.45 2.36 -11.49 -0.03 -0.48 16 18 H 0.08 2.40 7.50 -2.39 -0.02 2.38 16 19 C 0.09 2.79 5.87 41.40 0.24 3.04 16 20 C -0.29 -8.15 9.97 21.99 0.22 -7.93 16 21 C 0.04 1.19 12.03 85.24 1.03 2.21 16 22 N -0.33 -10.26 12.57 -57.02 -0.72 -10.97 16 23 N -0.38 -11.01 4.01 -356.02 -1.43 -12.44 16 24 C 0.09 1.93 11.06 127.77 1.41 3.34 16 25 C 0.08 2.91 3.40 86.32 0.29 3.20 16 26 H 0.07 1.91 6.84 -2.39 -0.02 1.89 16 27 H 0.05 1.66 6.46 -2.39 -0.02 1.64 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H -0.01 -0.66 6.12 -2.39 -0.01 -0.68 16 30 H -0.02 -0.89 8.07 -2.39 -0.02 -0.91 16 31 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 32 H 0.04 0.96 6.90 -2.39 -0.02 0.94 16 33 H 0.07 1.91 8.01 -2.39 -0.02 1.89 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.15 3.88 7.33 -2.91 -0.02 3.86 16 39 H 0.21 3.98 8.06 -2.91 -0.02 3.95 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.10 1.81 7.55 -2.39 -0.02 1.79 16 43 H 0.04 1.71 6.19 -2.39 -0.01 1.69 16 44 H 0.04 1.38 5.66 -2.39 -0.01 1.37 16 Total: -1.00 -71.76 340.17 3.02 -68.75 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.06 Total: 16.93 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 5.47 Total: -33.20 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -5.57 Total: -106.36 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.05 Total: 53.88 kcal Total: -71.76 3.02 -68.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411181349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.642 kcal (2) G-P(sol) polarization free energy of solvation -71.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds