Wall clock time and date at job start Mon Mar 30 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46643 * 2 1 4 4 C 1.52995 * 109.47249 * 120.00165 * 2 1 3 5 5 C 1.50699 * 109.47298 * 182.92960 * 4 2 1 6 6 H 1.08001 * 119.99959 * 355.14849 * 5 4 2 7 7 C 1.37870 * 119.99862 * 175.15042 * 5 4 2 8 8 N 1.31516 * 120.00427 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46958 * 90.00020 * 9 7 5 11 11 H 1.48500 * 109.47039 * 209.99828 * 9 7 5 12 12 H 1.48500 * 109.47230 * 329.99951 * 9 7 5 13 13 N 1.46895 * 109.46894 * 240.00563 * 2 1 3 14 14 C 1.46901 * 111.00404 * 72.80606 * 13 2 1 15 15 C 1.46895 * 111.00215 * 308.84901 * 13 2 1 16 16 C 1.50707 * 109.47269 * 190.00417 * 15 13 2 17 17 C 1.34853 * 125.96361 * 95.00051 * 16 15 13 18 18 N 1.36314 * 106.68947 * 179.97438 * 17 16 15 19 19 C 1.35486 * 107.37942 * 0.02562 * 18 17 16 20 20 N 1.30032 * 108.62755 * 359.97438 * 19 18 17 21 21 C 1.51045 * 123.93490 * 179.83968 * 19 18 17 22 22 C 1.53397 * 108.24659 * 344.12678 * 21 19 18 23 23 C 1.53151 * 109.24212 * 48.79411 * 22 21 19 24 24 C 1.46471 * 127.77894 * 180.08235 * 18 17 16 25 25 H 1.08995 * 109.46404 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46929 * 299.99673 * 1 2 3 27 27 H 1.09000 * 109.46798 * 59.99696 * 1 2 3 28 28 H 1.09003 * 109.47092 * 302.93377 * 4 2 1 29 29 H 1.09003 * 109.47068 * 62.92942 * 4 2 1 30 30 H 0.96994 * 120.00066 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46608 * 290.09991 * 14 13 2 32 32 H 1.09005 * 109.46953 * 50.09629 * 14 13 2 33 33 H 1.09000 * 109.47361 * 170.09961 * 14 13 2 34 34 H 1.08999 * 109.47594 * 70.00448 * 15 13 2 35 35 H 1.08999 * 109.47204 * 309.99990 * 15 13 2 36 36 H 1.08006 * 126.65479 * 359.96719 * 17 16 15 37 37 H 1.08994 * 109.71486 * 224.42625 * 21 19 18 38 38 H 1.08995 * 109.70922 * 103.82360 * 21 19 18 39 39 H 1.09001 * 109.51076 * 168.73088 * 22 21 19 40 40 H 1.09009 * 109.50964 * 288.86705 * 22 21 19 41 41 H 1.08997 * 109.46731 * 50.52454 * 23 22 21 42 42 H 1.09001 * 109.46749 * 170.50900 * 23 22 21 43 43 H 1.09003 * 109.58235 * 43.05995 * 24 18 17 44 44 H 1.08997 * 109.58166 * 282.64735 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5454 -0.6587 1.2860 6 1 4.0882 -0.2243 0.4595 7 6 4.2295 -1.1560 2.3748 8 7 3.5685 -1.6845 3.3815 9 14 6.0954 -1.0791 2.4202 10 1 6.5231 0.1971 3.0477 11 1 6.6187 -2.2204 3.2131 12 1 6.6277 -1.1528 1.0358 13 7 2.0197 -0.6924 -1.1995 14 6 1.8130 0.1266 -2.4014 15 6 1.3841 -2.0088 -1.3438 16 6 2.0800 -2.7861 -2.4313 17 6 3.0739 -3.6801 -2.2539 18 7 3.4086 -4.1441 -3.4912 19 6 2.6087 -3.5185 -4.3880 20 7 1.8183 -2.7096 -3.7463 21 6 2.6672 -3.7547 -5.8788 22 6 3.9882 -4.4648 -6.2010 23 6 4.1686 -5.6512 -5.2495 24 6 4.4334 -5.1338 -3.8314 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6345 -0.2387 2.1384 29 1 1.7203 -1.7630 1.2233 30 1 4.0499 -2.0340 4.1476 31 1 0.7474 0.1823 -2.6241 32 1 2.2009 1.1304 -2.2282 33 1 2.3371 -0.3253 -3.2435 34 1 0.3340 -1.8787 -1.6053 35 1 1.4594 -2.5537 -0.4028 36 1 3.5186 -3.9718 -1.3138 37 1 2.6250 -2.8006 -6.4041 38 1 1.8291 -4.3805 -6.1850 39 1 3.9671 -4.8234 -7.2302 40 1 4.8166 -3.7676 -6.0747 41 1 3.2640 -6.2593 -5.2514 42 1 5.0134 -6.2561 -5.5791 43 1 4.3888 -5.9632 -3.1256 44 1 5.4183 -4.6688 -3.7900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411633358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:26 Heat of formation + Delta-G solvation = 54.589027 kcal Electronic energy + Delta-G solvation = -22230.674471 eV Core-core repulsion = 19183.549133 eV Total energy + Delta-G solvation = -3047.125338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02518 -37.78209 -36.47633 -33.15675 -32.79878 -31.05860 -29.67629 -28.63187 -27.17578 -26.46724 -24.34000 -23.52863 -22.33768 -22.18649 -20.07736 -18.95084 -18.42378 -16.67054 -16.08040 -15.92608 -15.13456 -14.68948 -14.48150 -14.29954 -14.22831 -13.70955 -13.62343 -13.47800 -13.31558 -12.75954 -12.11385 -11.91542 -11.72187 -11.69099 -11.45453 -11.37258 -11.32151 -11.21270 -11.18725 -10.86493 -10.55908 -10.55093 -10.35139 -9.88486 -9.55623 -9.23398 -9.05891 -8.89200 -8.20933 -7.84694 -7.25038 -5.83126 -3.79692 2.38127 2.98281 3.40528 3.41824 3.46675 3.52261 4.25697 4.39221 4.46741 4.53302 4.60481 4.98577 5.04330 5.14059 5.22167 5.34721 5.41955 5.50523 5.53785 5.59279 5.61046 5.77968 5.85952 5.88667 5.90873 5.99397 6.09168 6.20582 6.24149 6.38506 6.52871 6.60121 6.62398 6.69110 6.83238 7.08924 7.17646 7.50622 7.67487 7.80028 8.04806 8.16250 8.22507 8.49557 8.68230 9.27620 9.81351 11.28968 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.005371 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.098984 B = 5212.074762 C = 6422.279505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.069 0.931 4 C 0.030 3.970 5 C -0.484 4.484 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.886 3.114 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.510 5.510 14 C 0.033 3.967 15 C 0.142 3.858 16 C 0.018 3.982 17 C -0.028 4.028 18 N -0.461 5.461 19 C 0.191 3.809 20 N -0.483 5.483 21 C -0.029 4.029 22 C -0.125 4.125 23 C -0.133 4.133 24 C 0.104 3.896 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.021 0.979 29 H 0.015 0.985 30 H 0.256 0.744 31 H 0.015 0.985 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.177 0.823 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 -7.523 -17.989 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.023 4.023 3 H 0.087 0.913 4 C -0.007 4.007 5 C -0.523 4.523 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.715 3.285 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.233 5.233 14 C -0.116 4.116 15 C 0.013 3.987 16 C -0.110 4.110 17 C -0.161 4.161 18 N -0.145 5.145 19 C -0.071 4.071 20 N -0.203 5.203 21 C -0.068 4.068 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.019 4.019 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.111 0.889 36 H 0.194 0.806 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.573 -7.277 -18.123 19.537 hybrid contribution 0.932 -0.408 0.554 1.159 sum 0.360 -7.684 -17.568 19.179 Atomic orbital electron populations 1.22527 0.99778 1.01320 1.00602 1.21962 0.90084 0.98240 0.91974 0.91307 1.19196 0.96324 0.95092 0.90083 1.21213 0.91661 1.37049 1.02359 0.92042 1.24992 0.97713 0.96220 0.95984 1.69967 1.34938 1.41915 1.07848 0.86689 0.86855 0.77249 0.77733 1.21028 1.21691 1.20053 1.62075 1.57448 1.01852 1.01964 1.22293 0.98268 0.97122 0.93878 1.20282 0.93600 0.90068 0.94716 1.20651 0.99154 0.99898 0.91323 1.22461 1.02271 1.02867 0.88527 1.45257 1.29235 1.33036 1.07020 1.23084 0.93509 0.96636 0.93831 1.69875 1.24626 1.20681 1.05071 1.20087 0.98063 1.01985 0.86653 1.21667 0.97766 0.97205 0.99651 1.21878 1.03405 0.98480 0.93322 1.21902 0.90952 0.91363 0.97634 0.92876 0.92661 0.94140 0.96036 0.96704 0.93453 0.96696 0.92870 0.91945 0.94681 0.88898 0.80572 0.89144 0.89845 0.90299 0.91159 0.90766 0.89591 0.89397 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 8.41 37.16 0.31 -3.06 16 2 C 0.09 1.83 2.27 -67.71 -0.15 1.68 16 3 H 0.07 1.51 7.87 -51.93 -0.41 1.10 16 4 C 0.03 0.78 4.40 -27.89 -0.12 0.65 16 5 C -0.48 -13.72 8.80 -34.44 -0.30 -14.02 16 6 H 0.06 1.77 7.69 -52.49 -0.40 1.37 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.33 13.29 55.43 0.74 -26.59 16 9 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.51 -10.65 4.30 -236.33 -1.02 -11.67 16 14 C 0.03 0.62 8.92 60.07 0.54 1.15 16 15 C 0.14 2.81 4.36 -4.98 -0.02 2.78 16 16 C 0.02 0.34 5.83 -82.71 -0.48 -0.14 16 17 C -0.03 -0.49 11.55 -16.76 -0.19 -0.69 16 18 N -0.46 -6.61 3.14 -113.75 -0.36 -6.97 16 19 C 0.19 2.85 7.65 -155.23 -1.19 1.66 16 20 N -0.48 -8.72 10.40 -6.88 -0.07 -8.79 16 21 C -0.03 -0.29 6.33 -27.51 -0.17 -0.47 16 22 C -0.12 -0.93 5.96 -26.45 -0.16 -1.09 16 23 C -0.13 -0.95 5.94 -26.52 -0.16 -1.11 16 24 C 0.10 1.02 6.98 -3.92 -0.03 0.99 16 25 H 0.05 0.96 6.54 -51.93 -0.34 0.62 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.68 7.02 -51.93 -0.36 0.32 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.01 0.40 6.36 -51.93 -0.33 0.07 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.01 0.26 7.08 -51.93 -0.37 -0.10 16 32 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 33 H 0.06 1.20 6.87 -51.93 -0.36 0.84 16 34 H 0.04 0.68 6.77 -51.93 -0.35 0.33 16 35 H 0.09 1.96 6.18 -51.93 -0.32 1.64 16 36 H 0.18 2.99 8.06 -52.48 -0.42 2.56 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.57 8.12 -51.92 -0.42 0.15 16 41 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -32.91 342.86 -10.23 -43.14 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.44 Total: -1.15 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.23 Total: -10.31 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.71 Total: -54.02 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.91 -10.23 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411633358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.731 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds