Wall clock time and date at job start Mon Mar 30 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46643 * 2 1 4 4 C 1.52995 * 109.47249 * 120.00165 * 2 1 3 5 5 C 1.50699 * 109.47298 * 182.92960 * 4 2 1 6 6 H 1.08001 * 119.99959 * 355.14849 * 5 4 2 7 7 C 1.37870 * 119.99862 * 175.15042 * 5 4 2 8 8 N 1.31516 * 120.00427 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46958 * 90.00020 * 9 7 5 11 11 H 1.48500 * 109.47039 * 209.99828 * 9 7 5 12 12 H 1.48500 * 109.47230 * 329.99951 * 9 7 5 13 13 N 1.46895 * 109.46894 * 240.00563 * 2 1 3 14 14 C 1.46901 * 111.00404 * 72.80606 * 13 2 1 15 15 C 1.46895 * 111.00215 * 308.84901 * 13 2 1 16 16 C 1.50707 * 109.47269 * 190.00417 * 15 13 2 17 17 C 1.34853 * 125.96361 * 95.00051 * 16 15 13 18 18 N 1.36314 * 106.68947 * 179.97438 * 17 16 15 19 19 C 1.35486 * 107.37942 * 0.02562 * 18 17 16 20 20 N 1.30032 * 108.62755 * 359.97438 * 19 18 17 21 21 C 1.51045 * 123.93490 * 179.83968 * 19 18 17 22 22 C 1.53397 * 108.24659 * 344.12678 * 21 19 18 23 23 C 1.53151 * 109.24212 * 48.79411 * 22 21 19 24 24 C 1.46471 * 127.77894 * 180.08235 * 18 17 16 25 25 H 1.08995 * 109.46404 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46929 * 299.99673 * 1 2 3 27 27 H 1.09000 * 109.46798 * 59.99696 * 1 2 3 28 28 H 1.09003 * 109.47092 * 302.93377 * 4 2 1 29 29 H 1.09003 * 109.47068 * 62.92942 * 4 2 1 30 30 H 0.96994 * 120.00066 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46608 * 290.09991 * 14 13 2 32 32 H 1.09005 * 109.46953 * 50.09629 * 14 13 2 33 33 H 1.09000 * 109.47361 * 170.09961 * 14 13 2 34 34 H 1.08999 * 109.47594 * 70.00448 * 15 13 2 35 35 H 1.08999 * 109.47204 * 309.99990 * 15 13 2 36 36 H 1.08006 * 126.65479 * 359.96719 * 17 16 15 37 37 H 1.08994 * 109.71486 * 224.42625 * 21 19 18 38 38 H 1.08995 * 109.70922 * 103.82360 * 21 19 18 39 39 H 1.09001 * 109.51076 * 168.73088 * 22 21 19 40 40 H 1.09009 * 109.50964 * 288.86705 * 22 21 19 41 41 H 1.08997 * 109.46731 * 50.52454 * 23 22 21 42 42 H 1.09001 * 109.46749 * 170.50900 * 23 22 21 43 43 H 1.09003 * 109.58235 * 43.05995 * 24 18 17 44 44 H 1.08997 * 109.58166 * 282.64735 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5454 -0.6587 1.2860 6 1 4.0882 -0.2243 0.4595 7 6 4.2295 -1.1560 2.3748 8 7 3.5685 -1.6845 3.3815 9 14 6.0954 -1.0791 2.4202 10 1 6.5231 0.1971 3.0477 11 1 6.6187 -2.2204 3.2131 12 1 6.6277 -1.1528 1.0358 13 7 2.0197 -0.6924 -1.1995 14 6 1.8130 0.1266 -2.4014 15 6 1.3841 -2.0088 -1.3438 16 6 2.0800 -2.7861 -2.4313 17 6 3.0739 -3.6801 -2.2539 18 7 3.4086 -4.1441 -3.4912 19 6 2.6087 -3.5185 -4.3880 20 7 1.8183 -2.7096 -3.7463 21 6 2.6672 -3.7547 -5.8788 22 6 3.9882 -4.4648 -6.2010 23 6 4.1686 -5.6512 -5.2495 24 6 4.4334 -5.1338 -3.8314 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6345 -0.2387 2.1384 29 1 1.7203 -1.7630 1.2233 30 1 4.0499 -2.0340 4.1476 31 1 0.7474 0.1823 -2.6241 32 1 2.2009 1.1304 -2.2282 33 1 2.3371 -0.3253 -3.2435 34 1 0.3340 -1.8787 -1.6053 35 1 1.4594 -2.5537 -0.4028 36 1 3.5186 -3.9718 -1.3138 37 1 2.6250 -2.8006 -6.4041 38 1 1.8291 -4.3805 -6.1850 39 1 3.9671 -4.8234 -7.2302 40 1 4.8166 -3.7676 -6.0747 41 1 3.2640 -6.2593 -5.2514 42 1 5.0134 -6.2561 -5.5791 43 1 4.3888 -5.9632 -3.1256 44 1 5.4183 -4.6688 -3.7900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411633358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:25 Heat of formation + Delta-G solvation = 35.042877 kcal Electronic energy + Delta-G solvation = -22231.522056 eV Core-core repulsion = 19183.549133 eV Total energy + Delta-G solvation = -3047.972923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.20506 -39.37180 -37.39430 -34.97351 -34.09911 -32.70711 -31.04121 -29.69375 -29.08706 -27.76643 -25.83450 -24.83029 -24.13451 -23.04956 -21.51910 -20.07607 -19.83840 -18.31743 -17.73852 -17.04240 -16.57875 -16.52613 -15.82590 -15.63927 -15.10591 -14.96514 -14.73730 -14.52099 -14.45078 -14.41812 -13.91725 -13.64371 -13.30539 -13.06579 -12.94245 -12.75347 -12.60933 -12.45797 -12.30690 -12.27182 -12.02175 -11.88928 -11.84140 -11.74511 -11.08209 -11.03624 -10.83216 -10.45742 -10.36208 -9.16783 -8.85388 -8.06723 -6.10556 1.15005 1.41082 1.41761 1.53477 1.94757 2.09292 2.48854 3.23514 3.33930 3.48730 3.66661 3.77601 3.82357 4.15686 4.21216 4.23202 4.35655 4.36862 4.45901 4.50715 4.51582 4.58538 4.65582 4.71869 4.81652 4.86725 4.88800 4.98819 5.03395 5.05506 5.10051 5.19150 5.22111 5.28683 5.30868 5.43392 5.53666 5.73085 5.83134 5.92953 6.35923 6.39766 6.44821 6.59144 7.02814 7.22896 7.54524 9.05363 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.005371 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.098984 B = 5212.074762 C = 6422.279505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 H 0.065 0.935 4 C 0.038 3.962 5 C -0.495 4.495 6 H 0.054 0.946 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.529 5.529 14 C 0.044 3.956 15 C 0.153 3.847 16 C -0.006 4.006 17 C -0.046 4.046 18 N -0.457 5.457 19 C 0.198 3.802 20 N -0.515 5.515 21 C -0.031 4.031 22 C -0.119 4.119 23 C -0.126 4.126 24 C 0.091 3.909 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.060 0.940 28 H -0.003 1.003 29 H -0.005 1.005 30 H 0.258 0.742 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.170 0.830 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -8.195 -20.486 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.015 4.015 3 H 0.083 0.917 4 C 0.001 3.999 5 C -0.533 4.533 6 H 0.072 0.928 7 C -0.197 4.197 8 N -0.581 5.581 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.252 5.252 14 C -0.104 4.104 15 C 0.024 3.976 16 C -0.134 4.134 17 C -0.180 4.180 18 N -0.141 5.141 19 C -0.066 4.066 20 N -0.236 5.236 21 C -0.069 4.069 22 C -0.157 4.157 23 C -0.164 4.164 24 C -0.030 4.030 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.188 0.812 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.116 0.884 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.601 -7.958 -20.637 22.126 hybrid contribution 0.572 -0.239 1.290 1.431 sum 1.173 -8.197 -19.347 21.045 Atomic orbital electron populations 1.22384 0.97251 1.01620 1.01885 1.21699 0.92085 0.97168 0.90570 0.91664 1.19033 0.95285 0.94186 0.91373 1.21445 0.92978 1.36781 1.02112 0.92763 1.25780 1.02511 0.95831 0.95617 1.70090 1.36830 1.42745 1.08459 0.85631 0.81080 0.77533 0.77839 1.20227 1.21049 1.19624 1.61981 1.58224 1.02556 1.02465 1.22187 0.98811 0.96889 0.92524 1.20057 0.93855 0.89488 0.94156 1.20566 1.00202 1.00854 0.91823 1.22409 1.02496 1.03374 0.89740 1.45493 1.29621 1.33250 1.05702 1.24036 0.91912 0.94842 0.95770 1.69823 1.26455 1.22666 1.04619 1.20370 1.00428 1.03002 0.83140 1.21687 0.95709 0.96883 1.01439 1.21915 1.04796 0.98529 0.91110 1.22335 0.89931 0.90723 0.99965 0.93087 0.92059 0.92076 0.98500 0.98640 0.93310 0.95720 0.92090 0.92597 0.94482 0.91352 0.81241 0.88750 0.88269 0.87153 0.91764 0.90632 0.86501 0.88424 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.31 8.41 71.99 0.61 -5.70 16 2 C 0.09 4.06 2.27 44.92 0.10 4.16 16 3 H 0.07 2.87 7.87 -2.39 -0.02 2.86 16 4 C 0.04 2.06 4.40 29.85 0.13 2.19 16 5 C -0.49 -28.72 8.80 25.60 0.23 -28.50 16 6 H 0.05 3.17 7.69 -2.91 -0.02 3.15 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -57.88 13.29 21.44 0.28 -57.60 16 9 Si 0.95 45.99 29.54 68.60 2.03 48.02 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.53 -22.44 4.30 -901.61 -3.87 -26.32 16 14 C 0.04 1.63 8.92 127.69 1.14 2.77 16 15 C 0.15 6.27 4.36 85.56 0.37 6.64 16 16 C -0.01 -0.25 5.83 41.41 0.24 0.00 16 17 C -0.05 -1.63 11.55 83.22 0.96 -0.67 16 18 N -0.46 -12.80 3.14 -513.80 -1.61 -14.41 16 19 C 0.20 5.68 7.65 138.23 1.06 6.74 16 20 N -0.52 -18.59 10.40 -175.67 -1.83 -20.42 16 21 C -0.03 -0.54 6.33 30.09 0.19 -0.35 16 22 C -0.12 -1.35 5.96 30.78 0.18 -1.16 16 23 C -0.13 -1.35 5.94 30.73 0.18 -1.17 16 24 C 0.09 1.61 6.98 86.47 0.60 2.21 16 25 H 0.05 1.87 6.54 -2.39 -0.02 1.85 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 1.98 7.02 -2.39 -0.02 1.96 16 28 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.00 -0.26 6.36 -2.39 -0.02 -0.28 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.02 0.85 7.08 -2.39 -0.02 0.83 16 32 H 0.06 2.12 7.90 -2.38 -0.02 2.10 16 33 H 0.06 2.14 6.87 -2.39 -0.02 2.12 16 34 H 0.04 1.47 6.77 -2.39 -0.02 1.45 16 35 H 0.07 3.07 6.18 -2.39 -0.01 3.06 16 36 H 0.17 6.08 8.06 -2.91 -0.02 6.06 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.84 8.12 -2.38 -0.02 0.82 16 41 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 42 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.45 342.86 2.42 -70.03 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.96 Total: 13.18 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 6.46 Total: -12.47 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -7.03 Total: -118.75 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -72.45 2.42 -70.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411633358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.070 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds