Wall clock time and date at job start Mon Mar 30 2020 02:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47140 * 2 1 4 4 C 1.53002 * 109.47116 * 239.99688 * 2 1 3 5 5 C 1.50702 * 109.46995 * 175.55267 * 4 2 1 6 6 H 1.07993 * 120.00109 * 4.86911 * 5 4 2 7 7 C 1.37880 * 119.99689 * 184.87113 * 5 4 2 8 8 N 1.31510 * 119.99861 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99665 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47309 * 60.00146 * 9 7 5 11 11 H 1.48506 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47066 * 299.99620 * 9 7 5 13 13 N 1.46899 * 109.46890 * 119.99983 * 2 1 3 14 14 C 1.46851 * 110.99780 * 294.21122 * 13 2 1 15 15 C 1.53041 * 109.52312 * 185.84082 * 14 13 2 16 16 C 1.53114 * 109.27747 * 300.82515 * 15 14 13 17 17 C 1.53116 * 109.16555 * 57.65315 * 16 15 14 18 18 H 1.09004 * 109.53552 * 62.30431 * 17 16 15 19 19 C 1.50697 * 109.50493 * 182.40424 * 17 16 15 20 20 N 1.30499 * 125.65148 * 59.49716 * 19 17 16 21 21 C 1.34130 * 109.25694 * 179.89284 * 20 19 17 22 22 C 1.34667 * 108.01882 * 0.37061 * 21 20 19 23 23 N 1.35049 * 125.64921 * 239.80433 * 19 17 16 24 24 C 1.46502 * 126.39667 * 359.97438 * 23 19 17 25 25 C 1.46847 * 111.00522 * 58.42241 * 13 2 1 26 26 H 1.08999 * 109.47290 * 60.00523 * 1 2 3 27 27 H 1.09007 * 109.47593 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47501 * 300.00267 * 1 2 3 29 29 H 1.09003 * 109.47042 * 295.54969 * 4 2 1 30 30 H 1.08993 * 109.47355 * 55.54763 * 4 2 1 31 31 H 0.97006 * 119.99831 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46262 * 65.82799 * 14 13 2 33 33 H 1.08996 * 109.45684 * 305.85564 * 14 13 2 34 34 H 1.09000 * 109.50053 * 180.88147 * 15 14 13 35 35 H 1.09003 * 109.53450 * 60.78386 * 15 14 13 36 36 H 1.09002 * 109.52471 * 297.74809 * 16 15 14 37 37 H 1.09002 * 109.57261 * 177.59327 * 16 15 14 38 38 H 1.07996 * 125.98879 * 180.10818 * 21 20 19 39 39 H 1.08003 * 126.58882 * 179.81736 * 22 21 20 40 40 H 1.09010 * 109.46473 * 90.00163 * 24 23 19 41 41 H 1.09000 * 109.47238 * 210.00175 * 24 23 19 42 42 H 1.08995 * 109.47541 * 330.00721 * 24 23 19 43 43 H 1.09001 * 109.45755 * 54.14386 * 25 13 2 44 44 H 1.08994 * 109.45991 * 294.18028 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5430 -0.6266 -1.3055 6 1 4.0864 -0.1735 -0.4897 7 6 4.2242 -1.1184 -2.3987 8 7 3.5624 -1.6706 -3.3920 9 14 6.0871 -1.0004 -2.4688 10 1 6.6734 -1.7363 -1.3200 11 1 6.5735 -1.5974 -3.7386 12 1 6.4955 0.4259 -2.4035 13 7 2.0196 -0.6925 1.1994 14 6 1.6649 0.0486 2.4166 15 6 2.3129 -0.6213 3.6304 16 6 1.8230 -2.0685 3.7305 17 6 2.1618 -2.8049 2.4315 18 1 3.2434 -2.8297 2.2980 19 6 1.6307 -4.2136 2.4985 20 7 0.3797 -4.5479 2.6603 21 6 0.2769 -5.8853 2.6694 22 6 1.5120 -6.3991 2.5152 23 7 2.3713 -5.3392 2.4067 24 6 3.8232 -5.4121 2.2251 25 6 1.5182 -2.0717 1.2525 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7432 -1.7694 -1.2102 30 1 1.6130 -0.2557 -2.1374 31 1 4.0417 -2.0170 -4.1610 32 1 0.5816 0.0504 2.5380 33 1 2.0227 1.0749 2.3340 34 1 2.0366 -0.0801 4.5354 35 1 3.3969 -0.6111 3.5169 36 1 0.7438 -2.0781 3.8837 37 1 2.3142 -2.5632 4.5685 38 1 -0.6359 -6.4508 2.7848 39 1 1.7742 -7.4463 2.4827 40 1 4.3108 -5.4294 3.2000 41 1 4.0757 -6.3194 1.6764 42 1 4.1635 -4.5417 1.6642 43 1 1.7694 -2.5853 0.3245 44 1 0.4357 -2.0599 1.3793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411642764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:01 Heat of formation + Delta-G solvation = 54.963284 kcal Electronic energy + Delta-G solvation = -22731.352229 eV Core-core repulsion = 19684.243120 eV Total energy + Delta-G solvation = -3047.109109 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.95397 -38.85873 -34.95273 -33.85487 -32.55244 -31.51907 -29.48474 -28.22916 -27.24053 -26.82417 -24.06126 -23.30902 -22.74430 -21.28281 -20.19141 -19.13429 -18.45795 -16.97477 -16.14097 -15.60399 -15.46389 -14.69818 -14.46548 -14.34952 -13.81077 -13.63962 -13.39672 -13.29509 -12.99669 -12.84385 -12.62103 -12.44871 -11.99874 -11.91118 -11.74183 -11.35201 -11.08149 -10.92778 -10.64544 -10.48692 -10.45853 -10.24610 -10.00355 -9.83379 -9.71147 -9.43571 -9.11106 -8.96105 -8.25792 -8.17739 -7.41068 -5.88724 -3.86675 2.19639 2.92380 3.33623 3.37441 3.42200 3.45001 4.42328 4.54650 4.76015 4.81014 4.93370 5.11514 5.18371 5.21810 5.32583 5.45493 5.47558 5.50029 5.62535 5.78892 5.82353 5.87385 5.91229 5.95559 6.04356 6.09687 6.17370 6.22031 6.27908 6.40735 6.46843 6.52263 6.63905 6.73090 6.82625 6.94278 7.02636 7.32164 7.58896 7.73899 7.95700 8.06886 8.13932 8.31560 8.59855 9.20349 9.74662 11.23148 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.006416 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.878424 B = 4363.154827 C = 5253.346686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.089 3.911 3 H 0.071 0.929 4 C 0.028 3.972 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.512 5.512 14 C 0.050 3.950 15 C -0.114 4.114 16 C -0.103 4.103 17 C 0.001 3.999 18 H 0.089 0.911 19 C 0.226 3.774 20 N -0.490 5.490 21 C -0.031 4.031 22 C -0.068 4.068 23 N -0.457 5.457 24 C 0.068 3.932 25 C 0.072 3.928 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.016 0.984 30 H 0.022 0.978 31 H 0.257 0.743 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 -5.495 14.019 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.019 4.019 3 H 0.089 0.911 4 C -0.009 4.009 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.236 5.236 14 C -0.078 4.078 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.020 4.020 18 H 0.108 0.892 19 C -0.037 4.037 20 N -0.208 5.208 21 C -0.180 4.180 22 C -0.201 4.201 23 N -0.139 5.139 24 C -0.075 4.075 25 C -0.057 4.057 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.183 0.817 39 H 0.187 0.813 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.103 -5.074 13.879 14.927 hybrid contribution 0.857 -0.843 -0.261 1.230 sum -1.247 -5.917 13.618 14.900 Atomic orbital electron populations 1.22524 0.99736 1.01455 1.00667 1.21893 0.90116 0.98345 0.91566 0.91083 1.19236 0.96360 0.95169 0.90156 1.21170 0.91751 1.37096 1.02865 0.91993 1.25023 0.97857 0.96079 0.95988 1.69963 1.35194 1.41028 1.08246 0.86720 0.86535 0.78194 0.76819 1.20526 1.21726 1.20438 1.62008 1.59295 1.01032 1.01240 1.22100 0.97298 0.97714 0.90710 1.21571 1.01349 0.94958 0.97293 1.21523 1.01783 0.95306 0.95516 1.19651 1.00320 0.84996 0.97020 0.89243 1.23309 0.86773 0.89928 1.03679 1.70208 1.16825 1.13406 1.20348 1.22243 0.96833 0.90925 1.07961 1.22611 0.90965 0.93318 1.13226 1.45319 1.08340 1.06666 1.53584 1.22103 0.77131 1.05279 1.03004 1.21957 0.96493 0.89822 0.97409 0.92627 0.92851 0.94000 0.96634 0.95992 0.93309 0.95416 0.91276 0.91951 0.91152 0.91271 0.92637 0.81706 0.81281 0.90713 0.89677 0.88568 0.89447 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.34 8.50 37.16 0.32 -3.02 16 2 C 0.09 1.82 2.30 -67.71 -0.16 1.67 16 3 H 0.07 1.48 8.07 -51.93 -0.42 1.06 16 4 C 0.03 0.71 4.27 -27.88 -0.12 0.59 16 5 C -0.49 -13.52 8.83 -34.44 -0.30 -13.82 16 6 H 0.06 1.70 7.73 -52.49 -0.41 1.29 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.51 -9.67 4.32 -226.69 -0.98 -10.65 16 14 C 0.05 0.78 5.04 -3.83 -0.02 0.76 16 15 C -0.11 -1.52 6.09 -26.65 -0.16 -1.68 16 16 C -0.10 -1.44 5.27 -26.61 -0.14 -1.58 16 17 C 0.00 0.01 2.68 -91.70 -0.25 -0.23 16 18 H 0.09 1.42 6.73 -51.93 -0.35 1.07 16 19 C 0.23 3.68 6.42 -155.41 -1.00 2.68 16 20 N -0.49 -8.43 11.25 -10.82 -0.12 -8.55 16 21 C -0.03 -0.45 11.87 -17.81 -0.21 -0.66 16 22 C -0.07 -0.88 11.58 -16.56 -0.19 -1.07 16 23 N -0.46 -6.40 3.15 -121.27 -0.38 -6.78 16 24 C 0.07 0.72 10.83 59.85 0.65 1.37 16 25 C 0.07 1.35 3.89 -3.84 -0.01 1.33 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 1.00 6.51 -51.92 -0.34 0.66 16 28 H 0.04 0.67 6.67 -51.93 -0.35 0.33 16 29 H 0.02 0.42 6.10 -51.93 -0.32 0.11 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.03 0.43 6.75 -51.93 -0.35 0.08 16 33 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 1.13 7.05 -51.93 -0.37 0.76 16 43 H 0.09 1.93 5.97 -51.93 -0.31 1.62 16 44 H 0.04 0.73 6.61 -51.93 -0.34 0.39 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -31.89 341.70 -9.64 -41.53 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.33 Total: 1.38 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.69 Total: -12.36 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.75 Total: -52.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.89 -9.64 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411642764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.497 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds