Wall clock time and date at job start Mon Mar 30 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47140 * 2 1 4 4 C 1.53002 * 109.47116 * 239.99688 * 2 1 3 5 5 C 1.50702 * 109.46995 * 175.55267 * 4 2 1 6 6 H 1.07993 * 120.00109 * 4.86911 * 5 4 2 7 7 C 1.37880 * 119.99689 * 184.87113 * 5 4 2 8 8 N 1.31510 * 119.99861 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99665 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47309 * 60.00146 * 9 7 5 11 11 H 1.48506 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47066 * 299.99620 * 9 7 5 13 13 N 1.46899 * 109.46890 * 119.99983 * 2 1 3 14 14 C 1.46851 * 110.99780 * 294.21122 * 13 2 1 15 15 C 1.53041 * 109.52312 * 185.84082 * 14 13 2 16 16 C 1.53114 * 109.27747 * 300.82515 * 15 14 13 17 17 C 1.53116 * 109.16555 * 57.65315 * 16 15 14 18 18 H 1.09004 * 109.53552 * 62.30431 * 17 16 15 19 19 C 1.50697 * 109.50493 * 182.40424 * 17 16 15 20 20 N 1.30499 * 125.65148 * 59.49716 * 19 17 16 21 21 C 1.34130 * 109.25694 * 179.89284 * 20 19 17 22 22 C 1.34667 * 108.01882 * 0.37061 * 21 20 19 23 23 N 1.35049 * 125.64921 * 239.80433 * 19 17 16 24 24 C 1.46502 * 126.39667 * 359.97438 * 23 19 17 25 25 C 1.46847 * 111.00522 * 58.42241 * 13 2 1 26 26 H 1.08999 * 109.47290 * 60.00523 * 1 2 3 27 27 H 1.09007 * 109.47593 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47501 * 300.00267 * 1 2 3 29 29 H 1.09003 * 109.47042 * 295.54969 * 4 2 1 30 30 H 1.08993 * 109.47355 * 55.54763 * 4 2 1 31 31 H 0.97006 * 119.99831 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46262 * 65.82799 * 14 13 2 33 33 H 1.08996 * 109.45684 * 305.85564 * 14 13 2 34 34 H 1.09000 * 109.50053 * 180.88147 * 15 14 13 35 35 H 1.09003 * 109.53450 * 60.78386 * 15 14 13 36 36 H 1.09002 * 109.52471 * 297.74809 * 16 15 14 37 37 H 1.09002 * 109.57261 * 177.59327 * 16 15 14 38 38 H 1.07996 * 125.98879 * 180.10818 * 21 20 19 39 39 H 1.08003 * 126.58882 * 179.81736 * 22 21 20 40 40 H 1.09010 * 109.46473 * 90.00163 * 24 23 19 41 41 H 1.09000 * 109.47238 * 210.00175 * 24 23 19 42 42 H 1.08995 * 109.47541 * 330.00721 * 24 23 19 43 43 H 1.09001 * 109.45755 * 54.14386 * 25 13 2 44 44 H 1.08994 * 109.45991 * 294.18028 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5430 -0.6266 -1.3055 6 1 4.0864 -0.1735 -0.4897 7 6 4.2242 -1.1184 -2.3987 8 7 3.5624 -1.6706 -3.3920 9 14 6.0871 -1.0004 -2.4688 10 1 6.6734 -1.7363 -1.3200 11 1 6.5735 -1.5974 -3.7386 12 1 6.4955 0.4259 -2.4035 13 7 2.0196 -0.6925 1.1994 14 6 1.6649 0.0486 2.4166 15 6 2.3129 -0.6213 3.6304 16 6 1.8230 -2.0685 3.7305 17 6 2.1618 -2.8049 2.4315 18 1 3.2434 -2.8297 2.2980 19 6 1.6307 -4.2136 2.4985 20 7 0.3797 -4.5479 2.6603 21 6 0.2769 -5.8853 2.6694 22 6 1.5120 -6.3991 2.5152 23 7 2.3713 -5.3392 2.4067 24 6 3.8232 -5.4121 2.2251 25 6 1.5182 -2.0717 1.2525 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7432 -1.7694 -1.2102 30 1 1.6130 -0.2557 -2.1374 31 1 4.0417 -2.0170 -4.1610 32 1 0.5816 0.0504 2.5380 33 1 2.0227 1.0749 2.3340 34 1 2.0366 -0.0801 4.5354 35 1 3.3969 -0.6111 3.5169 36 1 0.7438 -2.0781 3.8837 37 1 2.3142 -2.5632 4.5685 38 1 -0.6359 -6.4508 2.7848 39 1 1.7742 -7.4463 2.4827 40 1 4.3108 -5.4294 3.2000 41 1 4.0757 -6.3194 1.6764 42 1 4.1635 -4.5417 1.6642 43 1 1.7694 -2.5853 0.3245 44 1 0.4357 -2.0599 1.3793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411642764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:00 Heat of formation + Delta-G solvation = 35.733578 kcal Electronic energy + Delta-G solvation = -22732.186092 eV Core-core repulsion = 19684.243120 eV Total energy + Delta-G solvation = -3047.942972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.04811 -40.28523 -36.48527 -34.89506 -34.55429 -32.82252 -31.06391 -29.48705 -29.01755 -27.78780 -25.63505 -24.82324 -24.33802 -22.37130 -21.49756 -20.47631 -19.86943 -18.32197 -18.05103 -16.95516 -16.64328 -16.47617 -15.81544 -15.62371 -15.21159 -14.97945 -14.66928 -14.54025 -14.27456 -14.16791 -13.77522 -13.63922 -13.55830 -13.48418 -13.21982 -12.91415 -12.83329 -12.55941 -12.40358 -12.13396 -11.85386 -11.60652 -11.53562 -11.34805 -11.08585 -10.89035 -10.87964 -10.52065 -10.45792 -9.26574 -8.92014 -8.08056 -6.13722 1.12287 1.42629 1.45561 1.53208 1.93606 2.19720 2.48404 3.07859 3.26934 3.54473 3.81860 3.94923 3.95587 4.07799 4.20738 4.20763 4.36404 4.39650 4.43725 4.45433 4.54249 4.58896 4.65185 4.68934 4.77255 4.85029 4.87795 4.91959 5.06182 5.09764 5.13548 5.22302 5.22956 5.27517 5.40747 5.51647 5.52855 5.71879 5.90338 5.90907 6.24721 6.32420 6.45178 6.55933 7.00815 7.20040 7.52310 9.04034 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.006416 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.878424 B = 4363.154827 C = 5253.346686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.072 0.928 4 C 0.035 3.965 5 C -0.497 4.497 6 H 0.064 0.936 7 C -0.007 4.007 8 N -0.943 5.943 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.524 5.524 14 C 0.048 3.952 15 C -0.106 4.106 16 C -0.094 4.094 17 C 0.008 3.992 18 H 0.087 0.913 19 C 0.199 3.801 20 N -0.522 5.522 21 C -0.059 4.059 22 C -0.054 4.054 23 N -0.461 5.461 24 C 0.062 3.938 25 C 0.088 3.912 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.067 0.933 29 H -0.012 1.012 30 H -0.009 1.009 31 H 0.257 0.743 32 H 0.032 0.968 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.186 0.814 39 H 0.209 0.791 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -5.730 16.242 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.091 0.909 4 C -0.002 4.002 5 C -0.536 4.536 6 H 0.082 0.918 7 C -0.202 4.202 8 N -0.585 5.585 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.195 1.195 13 N -0.248 5.248 14 C -0.080 4.080 15 C -0.144 4.144 16 C -0.132 4.132 17 C -0.013 4.013 18 H 0.105 0.895 19 C -0.064 4.064 20 N -0.241 5.241 21 C -0.207 4.207 22 C -0.187 4.187 23 N -0.142 5.142 24 C -0.079 4.079 25 C -0.041 4.041 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.009 0.991 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.203 0.797 39 H 0.226 0.774 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.725 -5.296 16.126 16.989 hybrid contribution 0.383 -0.830 -0.978 1.339 sum -0.342 -6.125 15.148 16.343 Atomic orbital electron populations 1.22387 0.97852 1.01021 1.02025 1.21621 0.91606 0.97559 0.90496 0.90941 1.19073 0.95711 0.93826 0.91570 1.21462 0.92787 1.36522 1.02783 0.91782 1.25907 1.03044 0.95693 0.95604 1.70118 1.37232 1.42213 1.08952 0.85608 0.80339 0.78632 0.77071 1.19130 1.21665 1.19459 1.61947 1.59648 1.01245 1.01970 1.22232 0.97900 0.97987 0.89832 1.21562 1.01046 0.94471 0.97317 1.21459 1.01299 0.95679 0.94773 1.19539 0.99714 0.85306 0.96738 0.89465 1.23255 0.87157 0.90547 1.05488 1.70125 1.17700 1.15193 1.21129 1.22745 0.98629 0.90293 1.09027 1.23251 0.90172 0.94650 1.10633 1.45572 1.09631 1.06343 1.52680 1.22326 0.75441 1.05556 1.04596 1.21682 0.95963 0.89815 0.96657 0.92451 0.94163 0.91365 0.99388 0.99059 0.93390 0.95009 0.90307 0.88875 0.91156 0.92267 0.90898 0.79723 0.77379 0.88179 0.87505 0.90291 0.94003 0.95516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.36 8.50 71.98 0.61 -5.74 16 2 C 0.10 4.01 2.30 44.92 0.10 4.11 16 3 H 0.07 3.01 8.07 -2.39 -0.02 2.99 16 4 C 0.04 1.89 4.27 29.85 0.13 2.01 16 5 C -0.50 -28.06 8.83 25.60 0.23 -27.84 16 6 H 0.06 3.52 7.73 -2.91 -0.02 3.50 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 8 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 9 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.52 -19.90 4.32 -871.12 -3.77 -23.66 16 14 C 0.05 1.41 5.04 86.33 0.44 1.85 16 15 C -0.11 -2.57 6.09 30.65 0.19 -2.38 16 16 C -0.09 -2.48 5.27 30.67 0.16 -2.32 16 17 C 0.01 0.25 2.68 -11.49 -0.03 0.21 16 18 H 0.09 2.78 6.73 -2.38 -0.02 2.77 16 19 C 0.20 6.45 6.42 138.13 0.89 7.34 16 20 N -0.52 -18.08 11.25 -188.13 -2.12 -20.20 16 21 C -0.06 -1.66 11.87 83.52 0.99 -0.67 16 22 C -0.05 -1.28 11.58 83.09 0.96 -0.31 16 23 N -0.46 -12.36 3.15 -537.60 -1.69 -14.05 16 24 C 0.06 1.22 10.83 127.77 1.38 2.60 16 25 C 0.09 3.41 3.89 86.32 0.34 3.75 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.55 6.51 -2.38 -0.02 1.54 16 28 H 0.07 2.12 6.67 -2.39 -0.02 2.10 16 29 H -0.01 -0.71 6.10 -2.39 -0.01 -0.72 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 32 H 0.03 0.92 6.75 -2.39 -0.02 0.90 16 33 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.19 4.10 8.06 -2.91 -0.02 4.07 16 39 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.83 7.05 -2.39 -0.02 1.81 16 43 H 0.04 1.98 5.97 -2.39 -0.01 1.97 16 44 H 0.03 1.08 6.61 -2.39 -0.02 1.06 16 Total: -1.00 -71.45 341.70 2.54 -68.92 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.96 Total: 17.66 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 6.84 Total: -17.32 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -7.29 Total: -115.90 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -71.45 2.54 -68.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411642764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.649 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds