Wall clock time and date at job start Mon Mar 30 2020 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47114 * 2 1 4 4 C 1.52998 * 109.47071 * 240.00289 * 2 1 3 5 5 C 1.50706 * 109.47348 * 174.99997 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 N 1.46897 * 109.47285 * 120.00219 * 2 1 3 14 14 C 1.46844 * 111.00060 * 59.20938 * 13 2 1 15 15 C 1.53033 * 109.52497 * 174.16326 * 14 13 2 16 16 C 1.53119 * 109.28086 * 59.18147 * 15 14 13 17 17 C 1.53127 * 109.15461 * 302.34387 * 16 15 14 18 18 H 1.08991 * 109.50135 * 297.71244 * 17 16 15 19 19 C 1.50707 * 109.53299 * 177.61502 * 17 16 15 20 20 N 1.30497 * 125.64857 * 299.87306 * 19 17 16 21 21 C 1.34125 * 109.25841 * 179.89437 * 20 19 17 22 22 C 1.34674 * 108.01686 * 0.36537 * 21 20 19 23 23 N 1.35035 * 125.64989 * 120.17683 * 19 17 16 24 24 C 1.46500 * 126.39916 * 359.97438 * 23 19 17 25 25 C 1.46852 * 110.99930 * 295.00141 * 13 2 1 26 26 H 1.08995 * 109.47164 * 300.00008 * 1 2 3 27 27 H 1.09004 * 109.46684 * 59.99887 * 1 2 3 28 28 H 1.08997 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47671 * 55.00206 * 4 2 1 30 30 H 1.09006 * 109.47297 * 294.99926 * 4 2 1 31 31 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 32 32 H 1.09003 * 109.46461 * 294.18028 * 14 13 2 33 33 H 1.09005 * 109.46231 * 54.14338 * 14 13 2 34 34 H 1.08995 * 109.50310 * 299.23761 * 15 14 13 35 35 H 1.09004 * 109.50067 * 179.11962 * 15 14 13 36 36 H 1.08995 * 109.52454 * 182.44220 * 16 15 14 37 37 H 1.09000 * 109.52183 * 62.24979 * 16 15 14 38 38 H 1.07997 * 125.99430 * 180.11570 * 21 20 19 39 39 H 1.08000 * 126.59055 * 179.74658 * 22 21 20 40 40 H 1.08994 * 109.47539 * 89.99760 * 24 23 19 41 41 H 1.08997 * 109.47229 * 209.99956 * 24 23 19 42 42 H 1.09004 * 109.46793 * 329.99477 * 24 23 19 43 43 H 1.08998 * 109.45696 * 305.85206 * 25 13 2 44 44 H 1.08992 * 109.46238 * 65.82294 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0854 -0.5396 7 6 4.2304 -1.1934 -2.3579 8 7 3.5764 -1.8377 -3.2996 9 14 6.0920 -1.0610 -2.4369 10 1 6.5871 -1.7621 -3.6487 11 1 6.4844 0.3700 -2.4973 12 1 6.6846 -1.6862 -1.2272 13 7 2.0197 -0.6925 1.1994 14 6 1.5335 -2.0775 1.2428 15 6 2.1777 -2.8089 2.4226 16 6 1.8222 -2.0826 3.7228 17 6 2.2966 -0.6295 3.6324 18 1 3.3810 -0.6067 3.5253 19 6 1.8990 0.1091 4.8845 20 7 0.6779 0.2778 5.3127 21 6 0.7029 0.9793 6.4557 22 6 1.9878 1.2628 6.7424 23 7 2.7470 0.7110 5.7460 24 6 4.2068 0.7637 5.6349 25 6 1.6488 0.0388 2.4176 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6054 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 2.6097 -1.9061 -3.2587 32 1 0.4501 -2.0785 1.3626 33 1 1.7964 -2.5839 0.3140 34 1 3.2602 -2.8204 2.2964 35 1 1.8046 -3.8323 2.4637 36 1 2.3145 -2.5750 4.5614 37 1 0.7423 -2.1049 3.8690 38 1 -0.1570 1.2697 7.0410 39 1 2.3497 1.8191 7.5945 40 1 4.4964 1.6492 5.0692 41 1 4.6456 0.8097 6.6316 42 1 4.5646 -0.1287 5.1213 43 1 1.9956 1.0694 2.3422 44 1 0.5650 0.0279 2.5320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411642765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:04 Heat of formation + Delta-G solvation = 32.211170 kcal Electronic energy + Delta-G solvation = -22475.613416 eV Core-core repulsion = 19427.517701 eV Total energy + Delta-G solvation = -3048.095715 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.06976 -40.39332 -36.71275 -34.90380 -34.72030 -32.72859 -31.32070 -29.28210 -28.82588 -27.77351 -25.55587 -24.99325 -24.16174 -22.56254 -21.87723 -20.34153 -20.00449 -18.74827 -18.00937 -17.04894 -16.65955 -16.01839 -15.68319 -15.55713 -15.41333 -15.18059 -14.89126 -14.73230 -14.45354 -14.15926 -14.02160 -13.57890 -13.50564 -13.32928 -13.07422 -13.00380 -12.98233 -12.55376 -12.27603 -12.16789 -11.90069 -11.70545 -11.62298 -11.35888 -11.11683 -10.88077 -10.57022 -10.53133 -10.41707 -9.28718 -9.00374 -8.52566 -6.18235 1.10526 1.56346 1.65345 1.83932 1.91390 2.18158 2.65417 2.98002 3.31743 3.49051 3.77358 3.83511 3.97048 4.03664 4.10062 4.15216 4.26791 4.35215 4.36420 4.41976 4.42485 4.54143 4.59229 4.67932 4.73070 4.74951 4.78461 4.84342 4.92354 4.98378 5.06305 5.09918 5.10933 5.16074 5.31997 5.38100 5.46469 5.52502 5.88773 6.14010 6.23195 6.34253 6.37253 6.39839 6.76120 7.19444 7.59285 8.88205 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020956 B = 0.004769 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.835380 B = 5869.524113 C = 6433.045158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 H 0.060 0.940 4 C 0.020 3.980 5 C -0.574 4.574 6 H 0.050 0.950 7 C -0.045 4.045 8 N -0.950 5.950 9 Si 1.114 2.886 10 H -0.289 1.289 11 H -0.273 1.273 12 H -0.270 1.270 13 N -0.522 5.522 14 C 0.056 3.944 15 C -0.108 4.108 16 C -0.092 4.092 17 C 0.010 3.990 18 H 0.094 0.906 19 C 0.199 3.801 20 N -0.523 5.523 21 C -0.060 4.060 22 C -0.049 4.049 23 N -0.459 5.459 24 C 0.061 3.939 25 C 0.079 3.921 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.051 0.949 29 H -0.015 1.015 30 H -0.003 1.003 31 H 0.251 0.749 32 H 0.029 0.971 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.183 0.817 39 H 0.211 0.789 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 4.328 21.989 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.006 4.006 3 H 0.079 0.921 4 C -0.017 4.017 5 C -0.612 4.612 6 H 0.069 0.931 7 C -0.240 4.240 8 N -0.589 5.589 9 Si 0.937 3.063 10 H -0.215 1.215 11 H -0.198 1.198 12 H -0.196 1.196 13 N -0.246 5.246 14 C -0.071 4.071 15 C -0.145 4.145 16 C -0.131 4.131 17 C -0.011 4.011 18 H 0.112 0.888 19 C -0.064 4.064 20 N -0.243 5.243 21 C -0.208 4.208 22 C -0.182 4.182 23 N -0.140 5.140 24 C -0.080 4.080 25 C -0.050 4.050 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.003 0.997 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.201 0.799 39 H 0.227 0.773 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.061 3.631 20.700 21.043 hybrid contribution -1.941 0.830 0.839 2.271 sum -0.879 4.461 21.539 22.013 Atomic orbital electron populations 1.22397 0.97538 1.01639 1.01803 1.21460 0.91694 0.97081 0.90407 0.92145 1.19246 0.96295 0.94231 0.91908 1.22236 0.92851 1.36333 1.09790 0.93129 1.27230 1.10817 0.93374 0.92620 1.70927 1.09332 1.42888 1.35764 0.82960 0.69943 0.77080 0.76319 1.21537 1.19820 1.19561 1.61930 1.59796 1.01960 1.00897 1.22056 0.96420 0.89505 0.99157 1.21542 1.01300 0.98804 0.92887 1.21441 1.01204 0.92857 0.97574 1.19473 1.00891 0.94023 0.86682 0.88789 1.23075 0.85420 1.01749 0.96125 1.70140 1.21322 1.19669 1.13125 1.22740 0.97648 1.03986 0.96429 1.23258 0.91737 1.06115 0.97124 1.45574 1.09180 1.40055 1.19238 1.22364 0.74818 1.04805 1.06029 1.21848 0.97571 0.96646 0.88905 0.92133 0.92344 0.92954 0.99657 0.98452 0.93917 0.95258 0.92680 0.91562 0.89919 0.90658 0.92204 0.79941 0.77261 0.89743 0.86722 0.89041 0.92358 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.35 8.50 71.98 0.61 -5.74 16 2 C 0.10 4.34 2.30 44.91 0.10 4.44 16 3 H 0.06 2.65 8.08 -2.38 -0.02 2.63 16 4 C 0.02 1.06 3.58 29.85 0.11 1.16 16 5 C -0.57 -32.66 8.84 25.60 0.23 -32.44 16 6 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 7 C -0.04 -2.62 5.46 84.65 0.46 -2.16 16 8 N -0.95 -59.77 13.65 21.45 0.29 -59.47 16 9 Si 1.11 51.21 29.90 68.60 2.05 53.26 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 N -0.52 -20.16 4.36 -871.13 -3.80 -23.96 16 14 C 0.06 2.06 4.64 86.33 0.40 2.46 16 15 C -0.11 -3.16 6.09 30.65 0.19 -2.98 16 16 C -0.09 -2.46 5.27 30.68 0.16 -2.30 16 17 C 0.01 0.28 2.68 -11.48 -0.03 0.25 16 18 H 0.09 2.50 6.73 -2.39 -0.02 2.48 16 19 C 0.20 5.38 6.42 138.13 0.89 6.26 16 20 N -0.52 -15.66 11.25 -188.13 -2.12 -17.78 16 21 C -0.06 -1.41 11.87 83.53 0.99 -0.42 16 22 C -0.05 -0.89 11.58 83.09 0.96 0.07 16 23 N -0.46 -9.46 3.15 -537.61 -1.69 -11.16 16 24 C 0.06 0.78 10.83 127.77 1.38 2.16 16 25 C 0.08 2.62 4.29 86.32 0.37 2.99 16 26 H 0.06 2.00 6.65 -2.39 -0.02 1.99 16 27 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.05 1.89 6.52 -2.39 -0.02 1.87 16 29 H -0.01 -0.83 8.01 -2.39 -0.02 -0.85 16 30 H 0.00 -0.14 5.92 -2.38 -0.01 -0.16 16 31 H 0.25 16.06 7.22 -92.71 -0.67 15.39 16 32 H 0.03 1.03 6.62 -2.39 -0.02 1.02 16 33 H 0.05 2.38 5.93 -2.38 -0.01 2.37 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 1.17 7.05 -2.38 -0.02 1.15 16 43 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 44 H 0.03 1.13 6.73 -2.39 -0.02 1.11 16 Total: -1.00 -72.04 340.36 2.62 -69.42 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.06 Total: 15.92 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 6.82 Total: -26.23 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -7.31 Total: -112.37 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.26 kcal Total: -72.04 2.62 -69.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411642765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.628 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds