Wall clock time and date at job start Mon Mar 30 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47214 * 2 1 4 4 C 1.52993 * 109.47167 * 120.00183 * 2 1 3 5 5 C 1.50706 * 109.47094 * 295.56165 * 4 2 1 6 6 H 1.07999 * 119.99813 * 2.23162 * 5 4 2 7 7 C 1.37876 * 120.00347 * 182.24070 * 5 4 2 8 8 N 1.31514 * 119.99769 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00300 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46692 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.46854 * 119.99793 * 9 7 5 12 12 H 1.48497 * 109.47025 * 239.99950 * 9 7 5 13 13 N 1.46904 * 109.47036 * 239.99911 * 2 1 3 14 14 C 1.46849 * 110.99901 * 177.36856 * 13 2 1 15 15 C 1.53034 * 109.52250 * 174.15983 * 14 13 2 16 16 C 1.53118 * 109.27854 * 59.18272 * 15 14 13 17 17 C 1.53121 * 109.15962 * 302.34688 * 16 15 14 18 18 H 1.09002 * 109.49783 * 297.70811 * 17 16 15 19 19 C 1.50703 * 109.53370 * 177.61472 * 17 16 15 20 20 N 1.30493 * 125.65419 * 299.86438 * 19 17 16 21 21 C 1.34120 * 109.26047 * 179.89669 * 20 19 17 22 22 C 1.34665 * 108.02310 * 0.36711 * 21 20 19 23 23 N 1.35051 * 125.64893 * 120.17490 * 19 17 16 24 24 C 1.46498 * 126.39444 * 359.94191 * 23 19 17 25 25 C 1.46851 * 110.99663 * 53.16196 * 13 2 1 26 26 H 1.09007 * 109.47024 * 59.99867 * 1 2 3 27 27 H 1.08997 * 109.47575 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47415 * 299.99951 * 1 2 3 29 29 H 1.09003 * 109.47622 * 55.55300 * 4 2 1 30 30 H 1.08996 * 109.47535 * 175.55568 * 4 2 1 31 31 H 0.97000 * 120.00540 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46135 * 294.18296 * 14 13 2 33 33 H 1.08998 * 109.46046 * 54.14583 * 14 13 2 34 34 H 1.08995 * 109.50426 * 299.24079 * 15 14 13 35 35 H 1.09001 * 109.53512 * 179.14269 * 15 14 13 36 36 H 1.09000 * 109.52704 * 182.43620 * 16 15 14 37 37 H 1.09001 * 109.52345 * 62.24545 * 16 15 14 38 38 H 1.08003 * 125.99111 * 180.11458 * 21 20 19 39 39 H 1.07996 * 126.59715 * 179.74325 * 22 21 20 40 40 H 1.09004 * 109.47435 * 90.00160 * 24 23 19 41 41 H 1.09010 * 109.46854 * 209.99627 * 24 23 19 42 42 H 1.08999 * 109.47441 * 329.99827 * 24 23 19 43 43 H 1.08998 * 109.46456 * 305.85201 * 25 13 2 44 44 H 1.08997 * 109.46173 * 65.82348 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6294 0.0498 2.4772 6 1 1.0309 0.9433 2.3787 7 6 2.0181 -0.3854 3.7265 8 7 2.7466 -1.4737 3.8464 9 14 1.5098 0.5707 5.2486 10 1 0.6999 1.7485 4.8457 11 1 0.7035 -0.3047 6.1366 12 1 2.7223 1.0288 5.9732 13 7 2.0197 -0.6925 -1.1995 14 6 3.4863 -0.6579 -1.2653 15 6 3.9656 -1.5092 -2.4432 16 6 3.3648 -0.9611 -3.7406 17 6 1.8378 -0.9628 -3.6272 18 1 1.4833 -1.9861 -3.5036 19 6 1.2391 -0.3704 -4.8770 20 7 1.4487 0.8383 -5.3216 21 6 0.7567 1.0186 -6.4563 22 6 0.0865 -0.1192 -6.7207 23 7 0.3921 -1.0007 -5.7191 24 6 -0.1060 -2.3719 -5.5858 25 6 1.4201 -0.1273 -2.4150 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6131 -1.7234 1.2899 30 1 3.1270 -0.7908 1.2103 31 1 3.0198 -1.7802 4.7252 32 1 3.8194 0.3710 -1.4013 33 1 3.9008 -1.0541 -0.3384 34 1 3.6445 -2.5410 -2.3009 35 1 5.0534 -1.4713 -2.5014 36 1 3.6687 -1.5904 -4.5771 37 1 3.7168 0.0576 -3.9031 38 1 0.7368 1.9197 -7.0513 39 1 -0.5670 -0.3010 -7.5611 40 1 -1.0290 -2.3685 -5.0059 41 1 -0.3003 -2.7857 -6.5754 42 1 0.6404 -2.9819 -5.0770 43 1 0.3340 -0.1383 -2.3232 44 1 1.7630 0.8990 -2.5457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411642767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:09 Heat of formation + Delta-G solvation = 53.670128 kcal Electronic energy + Delta-G solvation = -22121.824553 eV Core-core repulsion = 19074.659368 eV Total energy + Delta-G solvation = -3047.165185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.17219 -38.80621 -35.04601 -34.09333 -32.59690 -31.71012 -29.89417 -28.45441 -27.14546 -26.75400 -24.39108 -23.42795 -22.24565 -21.49114 -20.32178 -19.02019 -18.95682 -17.17079 -16.57011 -15.81247 -15.33265 -14.88264 -14.54000 -14.40296 -13.83924 -13.75524 -13.45462 -13.37316 -13.08799 -12.90426 -12.85910 -12.78290 -12.33187 -11.96538 -11.37963 -11.18480 -11.01941 -10.91822 -10.81991 -10.62286 -10.53683 -10.22838 -9.99079 -9.92572 -9.77305 -9.65550 -9.14649 -9.00548 -8.38600 -8.29690 -7.61761 -5.96729 -3.97755 1.97264 2.68291 3.13644 3.32991 3.40685 3.44622 4.24239 4.48186 4.51953 4.59906 4.77169 4.87927 5.01382 5.08265 5.15749 5.24775 5.38738 5.41403 5.50427 5.63890 5.65763 5.80137 5.94221 5.99310 6.03025 6.14441 6.15437 6.20097 6.30145 6.34300 6.38720 6.54814 6.60045 6.73704 6.76869 6.96760 7.10404 7.14481 7.59546 7.68356 7.86706 7.94263 8.11248 8.12968 8.48437 9.08845 9.65325 11.14721 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030314 B = 0.003768 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.442633 B = 7429.954268 C = 7747.357734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.087 3.913 3 H 0.028 0.972 4 C 0.033 3.967 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.534 5.534 14 C 0.051 3.949 15 C -0.114 4.114 16 C -0.104 4.104 17 C 0.002 3.998 18 H 0.087 0.913 19 C 0.222 3.778 20 N -0.487 5.487 21 C -0.029 4.029 22 C -0.068 4.068 23 N -0.460 5.460 24 C 0.069 3.931 25 C 0.066 3.934 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.259 0.741 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -1.985 -20.644 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.020 4.020 3 H 0.046 0.954 4 C -0.004 4.004 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.259 5.259 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.143 4.143 17 C -0.018 4.018 18 H 0.105 0.895 19 C -0.041 4.041 20 N -0.205 5.205 21 C -0.178 4.178 22 C -0.201 4.201 23 N -0.143 5.143 24 C -0.073 4.073 25 C -0.063 4.063 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.346 -2.140 -20.104 20.492 hybrid contribution -0.691 0.721 0.249 1.029 sum -4.036 -1.419 -19.855 20.311 Atomic orbital electron populations 1.21824 0.95617 1.01451 1.00187 1.21812 0.94696 0.95379 0.90093 0.95424 1.19156 0.96383 0.95799 0.89038 1.21264 1.32665 1.10339 0.91155 0.92628 1.24980 0.95263 0.95103 0.98991 1.69977 1.37117 1.22865 1.23387 0.86583 0.78315 0.80065 0.83331 1.19790 1.21077 1.21102 1.62019 1.06174 1.56002 1.01707 1.22142 0.88385 0.97946 0.99218 1.21595 0.99520 1.00321 0.93774 1.21556 0.92914 1.02066 0.97757 1.19644 0.95641 0.99066 0.87495 0.89469 1.23358 0.95303 0.89553 0.95847 1.70235 1.24132 1.14854 1.11260 1.22294 1.00118 0.98589 0.96779 1.22632 1.08261 0.92151 0.97024 1.45346 1.35844 1.12804 1.20279 1.22068 1.01187 0.80197 1.03874 1.22001 0.99816 0.95791 0.88670 0.94897 0.92749 0.91513 0.95933 0.96122 0.93144 0.95435 0.89211 0.91214 0.91563 0.92530 0.91117 0.81568 0.81159 0.90311 0.89755 0.89189 0.90762 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.55 37.16 0.32 -2.28 16 2 C 0.09 1.85 2.11 -67.71 -0.14 1.71 16 3 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.03 0.86 4.42 -27.88 -0.12 0.74 16 5 C -0.52 -14.39 8.44 -34.44 -0.29 -14.68 16 6 H 0.06 1.52 6.94 -52.49 -0.36 1.16 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.53 -9.79 4.52 -226.69 -1.03 -10.82 16 14 C 0.05 0.88 5.27 -3.83 -0.02 0.86 16 15 C -0.11 -1.58 6.09 -26.65 -0.16 -1.74 16 16 C -0.10 -1.38 5.27 -26.61 -0.14 -1.52 16 17 C 0.00 0.03 2.68 -91.69 -0.25 -0.22 16 18 H 0.09 1.10 6.73 -51.93 -0.35 0.75 16 19 C 0.22 3.05 6.42 -155.41 -1.00 2.06 16 20 N -0.49 -7.43 11.25 -10.82 -0.12 -7.56 16 21 C -0.03 -0.36 11.87 -17.82 -0.21 -0.58 16 22 C -0.07 -0.70 11.58 -16.56 -0.19 -0.90 16 23 N -0.46 -5.09 3.15 -121.27 -0.38 -5.47 16 24 C 0.07 0.49 10.83 59.85 0.65 1.14 16 25 C 0.07 1.08 4.33 -3.83 -0.02 1.06 16 26 H 0.03 0.56 6.20 -51.92 -0.32 0.24 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.37 6.86 -51.93 -0.36 1.01 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.02 0.56 6.13 -51.93 -0.32 0.24 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.74 6.01 -51.93 -0.31 1.43 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.09 0.59 7.05 -51.93 -0.37 0.23 16 43 H 0.07 1.22 5.86 -51.93 -0.30 0.91 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -32.18 342.13 -9.66 -41.84 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.32 Total: -1.03 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.67 Total: -12.80 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.79 Total: -49.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.18 -9.66 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411642767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.506 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds