Wall clock time and date at job start Mon Mar 30 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47214 * 2 1 4 4 C 1.52993 * 109.47167 * 120.00183 * 2 1 3 5 5 C 1.50706 * 109.47094 * 295.56165 * 4 2 1 6 6 H 1.07999 * 119.99813 * 2.23162 * 5 4 2 7 7 C 1.37876 * 120.00347 * 182.24070 * 5 4 2 8 8 N 1.31514 * 119.99769 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00300 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46692 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.46854 * 119.99793 * 9 7 5 12 12 H 1.48497 * 109.47025 * 239.99950 * 9 7 5 13 13 N 1.46904 * 109.47036 * 239.99911 * 2 1 3 14 14 C 1.46849 * 110.99901 * 177.36856 * 13 2 1 15 15 C 1.53034 * 109.52250 * 174.15983 * 14 13 2 16 16 C 1.53118 * 109.27854 * 59.18272 * 15 14 13 17 17 C 1.53121 * 109.15962 * 302.34688 * 16 15 14 18 18 H 1.09002 * 109.49783 * 297.70811 * 17 16 15 19 19 C 1.50703 * 109.53370 * 177.61472 * 17 16 15 20 20 N 1.30493 * 125.65419 * 299.86438 * 19 17 16 21 21 C 1.34120 * 109.26047 * 179.89669 * 20 19 17 22 22 C 1.34665 * 108.02310 * 0.36711 * 21 20 19 23 23 N 1.35051 * 125.64893 * 120.17490 * 19 17 16 24 24 C 1.46498 * 126.39444 * 359.94191 * 23 19 17 25 25 C 1.46851 * 110.99663 * 53.16196 * 13 2 1 26 26 H 1.09007 * 109.47024 * 59.99867 * 1 2 3 27 27 H 1.08997 * 109.47575 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47415 * 299.99951 * 1 2 3 29 29 H 1.09003 * 109.47622 * 55.55300 * 4 2 1 30 30 H 1.08996 * 109.47535 * 175.55568 * 4 2 1 31 31 H 0.97000 * 120.00540 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46135 * 294.18296 * 14 13 2 33 33 H 1.08998 * 109.46046 * 54.14583 * 14 13 2 34 34 H 1.08995 * 109.50426 * 299.24079 * 15 14 13 35 35 H 1.09001 * 109.53512 * 179.14269 * 15 14 13 36 36 H 1.09000 * 109.52704 * 182.43620 * 16 15 14 37 37 H 1.09001 * 109.52345 * 62.24545 * 16 15 14 38 38 H 1.08003 * 125.99111 * 180.11458 * 21 20 19 39 39 H 1.07996 * 126.59715 * 179.74325 * 22 21 20 40 40 H 1.09004 * 109.47435 * 90.00160 * 24 23 19 41 41 H 1.09010 * 109.46854 * 209.99627 * 24 23 19 42 42 H 1.08999 * 109.47441 * 329.99827 * 24 23 19 43 43 H 1.08998 * 109.46456 * 305.85201 * 25 13 2 44 44 H 1.08997 * 109.46173 * 65.82348 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6294 0.0498 2.4772 6 1 1.0309 0.9433 2.3787 7 6 2.0181 -0.3854 3.7265 8 7 2.7466 -1.4737 3.8464 9 14 1.5098 0.5707 5.2486 10 1 0.6999 1.7485 4.8457 11 1 0.7035 -0.3047 6.1366 12 1 2.7223 1.0288 5.9732 13 7 2.0197 -0.6925 -1.1995 14 6 3.4863 -0.6579 -1.2653 15 6 3.9656 -1.5092 -2.4432 16 6 3.3648 -0.9611 -3.7406 17 6 1.8378 -0.9628 -3.6272 18 1 1.4833 -1.9861 -3.5036 19 6 1.2391 -0.3704 -4.8770 20 7 1.4487 0.8383 -5.3216 21 6 0.7567 1.0186 -6.4563 22 6 0.0865 -0.1192 -6.7207 23 7 0.3921 -1.0007 -5.7191 24 6 -0.1060 -2.3719 -5.5858 25 6 1.4201 -0.1273 -2.4150 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6131 -1.7234 1.2899 30 1 3.1270 -0.7908 1.2103 31 1 3.0198 -1.7802 4.7252 32 1 3.8194 0.3710 -1.4013 33 1 3.9008 -1.0541 -0.3384 34 1 3.6445 -2.5410 -2.3009 35 1 5.0534 -1.4713 -2.5014 36 1 3.6687 -1.5904 -4.5771 37 1 3.7168 0.0576 -3.9031 38 1 0.7368 1.9197 -7.0513 39 1 -0.5670 -0.3010 -7.5611 40 1 -1.0290 -2.3685 -5.0059 41 1 -0.3003 -2.7857 -6.5754 42 1 0.6404 -2.9819 -5.0770 43 1 0.3340 -0.1383 -2.3232 44 1 1.7630 0.8990 -2.5457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411642767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:09 Heat of formation + Delta-G solvation = 34.120239 kcal Electronic energy + Delta-G solvation = -22122.672300 eV Core-core repulsion = 19074.659368 eV Total energy + Delta-G solvation = -3048.012931 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.04886 -40.21227 -36.62112 -34.88194 -34.58709 -32.92735 -31.56729 -29.51847 -28.63786 -27.73820 -26.06078 -24.80263 -23.81919 -22.39416 -21.50865 -20.59826 -20.06317 -18.68295 -17.98110 -16.86514 -16.66310 -16.51210 -15.87459 -15.80031 -15.17655 -14.91268 -14.64258 -14.49022 -14.27236 -14.22751 -14.08332 -13.66097 -13.63722 -13.43039 -13.19166 -12.90485 -12.69386 -12.55685 -12.24309 -12.21673 -12.00710 -11.74411 -11.53689 -11.34202 -11.10184 -10.96466 -10.82946 -10.50747 -10.48953 -9.27548 -9.17521 -8.16637 -6.25577 1.12253 1.40452 1.41094 1.53781 1.93444 2.19912 2.42056 2.99174 3.16966 3.49813 3.78903 3.87550 3.99504 4.05778 4.16097 4.25030 4.30162 4.34963 4.44819 4.49800 4.54609 4.61280 4.66265 4.71257 4.74422 4.78334 4.82524 4.99282 5.01335 5.08190 5.09220 5.19239 5.24244 5.37905 5.39353 5.47007 5.53053 5.73797 5.81257 5.90246 6.14486 6.26259 6.34301 6.40493 6.90012 7.22055 7.42201 8.95611 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030314 B = 0.003768 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.442633 B = 7429.954268 C = 7747.357734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.095 3.905 3 H 0.012 0.988 4 C 0.045 3.955 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.534 5.534 14 C 0.050 3.950 15 C -0.104 4.104 16 C -0.096 4.096 17 C 0.011 3.989 18 H 0.102 0.898 19 C 0.199 3.801 20 N -0.527 5.527 21 C -0.062 4.062 22 C -0.048 4.048 23 N -0.458 5.458 24 C 0.061 3.939 25 C 0.074 3.926 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.054 0.946 29 H -0.005 1.005 30 H -0.004 1.004 31 H 0.262 0.738 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.181 0.819 39 H 0.211 0.789 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 -2.433 -22.350 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.013 4.013 3 H 0.030 0.970 4 C 0.008 3.992 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.785 3.215 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.206 1.206 13 N -0.259 5.259 14 C -0.078 4.078 15 C -0.142 4.142 16 C -0.135 4.135 17 C -0.009 4.009 18 H 0.120 0.880 19 C -0.064 4.064 20 N -0.246 5.246 21 C -0.210 4.210 22 C -0.181 4.181 23 N -0.140 5.140 24 C -0.080 4.080 25 C -0.054 4.054 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.198 0.802 39 H 0.227 0.773 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -4.675 -2.602 -21.823 22.469 hybrid contribution -0.286 0.852 0.706 1.143 sum -4.961 -1.750 -21.118 21.763 Atomic orbital electron populations 1.21709 0.93976 1.01655 1.00784 1.21541 0.95945 0.93951 0.89856 0.97014 1.18950 0.94706 0.94621 0.90941 1.21625 1.32680 1.10580 0.92255 0.92376 1.25874 0.95156 0.96049 1.02387 1.70104 1.38173 1.24444 1.24362 0.85475 0.78116 0.78829 0.79097 1.18812 1.20326 1.20584 1.61993 1.06817 1.55441 1.01604 1.22149 0.87822 0.98105 0.99732 1.21539 1.00622 0.99667 0.92362 1.21475 0.92672 1.01469 0.97841 1.19498 0.95883 0.99096 0.86469 0.87996 1.23110 0.96989 0.89811 0.96499 1.70145 1.25531 1.16125 1.12779 1.22724 1.01109 1.00380 0.96764 1.23240 1.06866 0.90969 0.97030 1.45579 1.34748 1.14085 1.19568 1.22386 1.01452 0.78256 1.05951 1.21952 0.99476 0.95279 0.88733 0.92423 0.92672 0.92724 0.98651 0.98527 0.92886 0.96332 0.91971 0.90573 0.89791 0.90337 0.92741 0.80154 0.77254 0.89601 0.86879 0.88736 0.90747 0.96262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 8.55 71.98 0.62 -4.23 16 2 C 0.09 4.16 2.11 44.91 0.09 4.26 16 3 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 4 C 0.05 2.42 4.42 29.85 0.13 2.56 16 5 C -0.53 -30.49 8.44 25.60 0.22 -30.27 16 6 H 0.06 3.23 6.94 -2.91 -0.02 3.21 16 7 C 0.00 0.18 5.46 84.65 0.46 0.64 16 8 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.53 -19.98 4.52 -871.12 -3.94 -23.92 16 14 C 0.05 1.79 5.27 86.32 0.45 2.25 16 15 C -0.10 -2.80 6.09 30.64 0.19 -2.62 16 16 C -0.10 -2.43 5.27 30.67 0.16 -2.27 16 17 C 0.01 0.29 2.68 -11.49 -0.03 0.26 16 18 H 0.10 2.35 6.73 -2.39 -0.02 2.33 16 19 C 0.20 5.17 6.42 138.13 0.89 6.06 16 20 N -0.53 -15.74 11.25 -188.13 -2.12 -17.86 16 21 C -0.06 -1.44 11.87 83.52 0.99 -0.45 16 22 C -0.05 -0.83 11.58 83.08 0.96 0.13 16 23 N -0.46 -8.83 3.15 -537.60 -1.69 -10.52 16 24 C 0.06 0.64 10.83 127.77 1.38 2.03 16 25 C 0.07 2.41 4.33 86.33 0.37 2.78 16 26 H 0.06 1.95 6.20 -2.38 -0.01 1.93 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 28 H 0.05 2.25 6.86 -2.39 -0.02 2.23 16 29 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.00 -0.20 6.13 -2.39 -0.01 -0.22 16 31 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 2.56 6.01 -2.39 -0.01 2.55 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.18 3.32 8.06 -2.91 -0.02 3.29 16 39 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.09 0.94 7.05 -2.39 -0.02 0.92 16 43 H 0.07 2.39 5.86 -2.39 -0.01 2.37 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -71.55 342.13 2.41 -69.14 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.96 Total: 11.77 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 6.89 Total: -18.89 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -7.47 Total: -108.80 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.55 2.41 -69.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411642767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.256 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds