Wall clock time and date at job start Mon Mar 30 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35202 * 126.00431 * 2 1 4 4 C 1.34568 * 107.61860 * 179.97438 * 3 2 1 5 5 C 1.40483 * 108.03817 * 0.07345 * 4 3 2 6 6 N 1.30134 * 108.22882 * 359.89975 * 5 4 3 7 7 C 1.50944 * 123.48589 * 179.80038 * 5 4 3 8 8 C 1.53367 * 108.20376 * 343.30515 * 7 5 4 9 9 C 1.53061 * 109.73699 * 50.68537 * 8 7 5 10 10 C 1.50883 * 128.32729 * 180.11524 * 4 3 2 11 11 H 1.09001 * 109.71408 * 283.08553 * 10 4 3 12 12 N 1.46903 * 109.72085 * 43.68548 * 10 4 3 13 13 C 1.46903 * 111.00001 * 275.00346 * 12 10 4 14 14 C 1.52999 * 109.46998 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47338 * 59.99774 * 14 13 12 16 16 C 1.53011 * 109.46800 * 299.99884 * 14 13 12 17 17 C 1.50698 * 109.46998 * 180.02562 * 14 13 12 18 18 H 1.07995 * 119.99845 * 359.77089 * 17 14 13 19 19 C 1.37884 * 119.99812 * 179.77609 * 17 14 13 20 20 N 1.31515 * 119.99674 * 1.47838 * 19 17 14 21 21 Si 1.86797 * 119.99742 * 181.48357 * 19 17 14 22 22 H 1.48497 * 109.47217 * 269.99707 * 21 19 17 23 23 H 1.48494 * 109.47420 * 29.99844 * 21 19 17 24 24 H 1.48499 * 109.46703 * 149.99973 * 21 19 17 25 25 H 1.09004 * 109.47284 * 269.97490 * 1 2 3 26 26 H 1.08999 * 109.47175 * 29.97707 * 1 2 3 27 27 H 1.08994 * 109.47172 * 149.97584 * 1 2 3 28 28 H 1.08007 * 126.18553 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.71922 * 102.98213 * 7 5 4 30 30 H 1.09005 * 109.71977 * 223.62886 * 7 5 4 31 31 H 1.08999 * 109.42800 * 170.75848 * 8 7 5 32 32 H 1.09006 * 109.42758 * 290.59097 * 8 7 5 33 33 H 1.08995 * 109.42752 * 168.20445 * 9 8 7 34 34 H 1.08997 * 109.44667 * 48.35411 * 9 8 7 35 35 H 1.00895 * 110.99858 * 151.04887 * 12 10 4 36 36 H 1.08999 * 109.47170 * 59.99785 * 13 12 10 37 37 H 1.09001 * 109.46785 * 299.99519 * 13 12 10 38 38 H 1.09002 * 109.47022 * 172.48033 * 15 14 13 39 39 H 1.09008 * 109.47006 * 292.47906 * 15 14 13 40 40 H 1.08992 * 109.47220 * 52.47420 * 15 14 13 41 41 H 1.08998 * 109.46776 * 307.38673 * 16 14 13 42 42 H 1.08993 * 109.47118 * 67.38569 * 16 14 13 43 43 H 1.09004 * 109.46453 * 187.38669 * 16 14 13 44 44 H 0.96992 * 120.00268 * 357.12273 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5367 0.6693 0.0006 5 6 3.5282 -0.7355 -0.0008 6 7 2.2897 -1.1351 0.0001 7 6 4.7820 -1.5759 -0.0050 8 6 5.9559 -0.6831 -0.4259 9 6 5.9643 0.5925 0.4200 10 6 4.7980 1.4974 0.0032 11 1 4.9789 1.8950 -0.9955 12 7 4.6626 2.6038 0.9600 13 6 3.9870 3.7533 0.3434 14 6 3.8652 4.8831 1.3680 15 6 5.2612 5.3017 1.8340 16 6 3.0511 4.3969 2.5689 17 6 3.1716 6.0621 0.7357 18 1 2.8531 6.0121 -0.2950 19 6 2.9437 7.2046 1.4731 20 7 3.3575 7.2763 2.7194 21 14 2.0471 8.6506 0.7019 22 1 3.0317 9.5590 0.0614 23 1 1.0938 8.1528 -0.3221 24 1 1.3030 9.3893 1.7534 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 1.9294 2.1221 -0.0004 29 1 4.9619 -1.9731 0.9940 30 1 4.6721 -2.3970 -0.7135 31 1 6.8920 -1.2217 -0.2787 32 1 5.8518 -0.4196 -1.4785 33 1 6.9053 1.1213 0.2692 34 1 5.8613 0.3304 1.4730 35 1 5.5610 2.8704 1.3341 36 1 2.9927 3.4550 0.0111 37 1 4.5672 4.0999 -0.5117 38 1 5.1839 6.1911 2.4594 39 1 5.7106 4.4915 2.4084 40 1 5.8834 5.5205 0.9663 41 1 2.1070 3.9772 2.2218 42 1 3.6140 3.6320 3.1037 43 1 2.8525 5.2354 3.2365 44 1 3.7858 6.5107 3.1330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414165396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:51 Heat of formation + Delta-G solvation = 73.971776 kcal Electronic energy + Delta-G solvation = -22518.281018 eV Core-core repulsion = 19471.996178 eV Total energy + Delta-G solvation = -3046.284839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25309 -37.66965 -36.38273 -34.01051 -32.32207 -31.05210 -29.48781 -27.95498 -26.67366 -25.87341 -25.39051 -23.65184 -22.05940 -21.75527 -20.37479 -18.69181 -18.60510 -16.77773 -16.44098 -15.61411 -14.95236 -14.76340 -14.40971 -14.23795 -13.80406 -13.71134 -13.23166 -12.92206 -12.80068 -12.74033 -12.36031 -12.20808 -12.07475 -11.72556 -11.27665 -11.18153 -11.02235 -10.92647 -10.66642 -10.60507 -10.49103 -10.43398 -10.15456 -10.04879 -9.61533 -9.27016 -9.01740 -8.29828 -8.21511 -8.08378 -7.73843 -6.16312 -4.01159 2.14066 2.67236 2.99770 3.44090 3.46841 3.62411 4.45416 4.53507 4.72575 4.85581 4.93219 5.03899 5.18217 5.23884 5.34541 5.41102 5.42600 5.52801 5.57010 5.66829 5.78569 5.86638 5.91090 6.02562 6.13809 6.22137 6.31040 6.42530 6.44842 6.53755 6.67404 6.81847 6.87720 6.94093 7.12360 7.21752 7.25817 7.28365 7.67672 7.70127 7.82000 7.93677 8.02458 8.36773 8.49701 8.94336 9.70435 11.09313 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021091 B = 0.004941 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.253686 B = 5666.050756 C = 6545.427907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.389 5.389 3 C 0.076 3.924 4 C -0.214 4.214 5 C 0.076 3.924 6 N -0.302 5.302 7 C -0.034 4.034 8 C -0.111 4.111 9 C -0.119 4.119 10 C 0.163 3.837 11 H 0.043 0.957 12 N -0.681 5.681 13 C 0.083 3.917 14 C 0.054 3.946 15 C -0.147 4.147 16 C -0.128 4.128 17 C -0.587 4.587 18 H 0.045 0.955 19 C 0.024 3.976 20 N -0.920 5.920 21 Si 1.064 2.936 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.176 0.824 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.338 0.662 36 H 0.056 0.944 37 H 0.015 0.985 38 H 0.070 0.930 39 H 0.021 0.979 40 H 0.028 0.972 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.058 0.942 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -14.807 -5.623 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.172 5.172 3 C -0.068 4.068 4 C -0.225 4.225 5 C -0.092 4.092 6 N -0.124 5.124 7 C -0.073 4.073 8 C -0.149 4.149 9 C -0.157 4.157 10 C 0.052 3.948 11 H 0.061 0.939 12 N -0.313 5.313 13 C -0.046 4.046 14 C 0.053 3.947 15 C -0.205 4.205 16 C -0.186 4.186 17 C -0.626 4.626 18 H 0.064 0.936 19 C -0.180 4.180 20 N -0.561 5.561 21 Si 0.894 3.106 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.211 1.211 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.193 0.807 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.158 0.842 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.077 0.923 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.834 -14.486 -5.039 15.360 hybrid contribution 1.435 -0.353 -0.909 1.735 sum 0.602 -14.838 -5.947 15.997 Atomic orbital electron populations 1.21759 0.74651 1.03977 1.03116 1.48436 1.06172 1.03533 1.59042 1.22308 0.90848 0.93168 1.00484 1.19906 0.94487 0.92881 1.15264 1.22240 0.93163 0.93849 0.99939 1.76899 1.01227 1.08475 1.25798 1.20064 0.88733 0.96186 1.02359 1.21515 0.97319 0.95868 1.00234 1.21732 0.97378 0.95729 1.00857 1.19804 0.90284 0.90537 0.94186 0.93949 1.60587 1.26646 1.08488 1.35544 1.22132 0.96833 0.89588 0.96002 1.18265 0.92386 0.91919 0.92095 1.22069 0.98010 1.00726 0.99739 1.21829 0.98407 0.99076 0.99331 1.21877 1.41275 1.00378 0.99034 0.93646 1.25590 0.96405 1.00372 0.95589 1.70803 1.37647 1.34653 1.13009 0.83618 0.76292 0.75613 0.75099 1.21669 1.21717 1.21142 0.91092 0.89611 0.89819 0.80730 0.90117 0.90479 0.91136 0.91676 0.91847 0.90822 0.84233 0.92564 0.96703 0.91159 0.96009 0.95295 0.95509 0.95387 0.92316 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.13 11.47 59.85 0.69 1.81 16 2 N -0.39 -5.90 4.02 -68.29 -0.27 -6.17 16 3 C 0.08 1.24 10.74 -17.37 -0.19 1.05 16 4 C -0.21 -3.45 5.58 -104.99 -0.59 -4.03 16 5 C 0.08 1.17 7.10 -82.35 -0.58 0.58 16 6 N -0.30 -4.93 12.56 33.75 0.42 -4.51 16 7 C -0.03 -0.39 6.31 -27.57 -0.17 -0.57 16 8 C -0.11 -1.14 5.86 -26.51 -0.16 -1.30 16 9 C -0.12 -1.45 5.16 -26.50 -0.14 -1.59 16 10 C 0.16 2.48 2.85 -68.57 -0.20 2.28 16 11 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 12 N -0.68 -11.87 5.60 -107.64 -0.60 -12.47 16 13 C 0.08 1.68 4.29 -3.82 -0.02 1.66 16 14 C 0.05 1.27 0.57 -155.66 -0.09 1.18 16 15 C -0.15 -3.37 7.62 37.16 0.28 -3.09 16 16 C -0.13 -3.03 7.90 37.16 0.29 -2.74 16 17 C -0.59 -15.73 8.01 -34.44 -0.28 -16.00 16 18 H 0.05 1.23 7.74 -52.49 -0.41 0.82 16 19 C 0.02 0.67 5.10 -17.82 -0.09 0.58 16 20 N -0.92 -26.56 12.12 55.43 0.67 -25.89 16 21 Si 1.06 24.71 29.90 -169.99 -5.08 19.63 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.18 2.87 5.84 -52.48 -0.31 2.56 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.34 5.75 6.61 -39.29 -0.26 5.49 16 36 H 0.06 1.15 5.33 -51.93 -0.28 0.87 16 37 H 0.01 0.31 8.06 -51.93 -0.42 -0.11 16 38 H 0.07 1.79 5.20 -51.93 -0.27 1.52 16 39 H 0.02 0.43 6.93 -51.92 -0.36 0.07 16 40 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.61 7.80 -51.93 -0.41 0.21 16 43 H 0.06 1.52 5.25 -51.93 -0.27 1.25 16 44 H 0.28 8.00 3.56 -40.82 -0.15 7.85 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -30.84 333.71 -8.03 -38.87 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.97 Total: 5.68 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.23 Total: -20.17 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.22 Total: -49.04 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.84 -8.03 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414165396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.846 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds