Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47675 * 2 1 4 4 N 1.46899 * 109.47070 * 120.00113 * 2 1 3 5 5 C 1.46905 * 110.99908 * 274.99747 * 4 2 1 6 6 C 1.52996 * 109.47199 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47388 * 300.00088 * 6 5 4 8 8 C 1.53007 * 109.46880 * 59.99872 * 6 5 4 9 9 C 1.50699 * 109.47056 * 179.97438 * 6 5 4 10 10 H 1.07988 * 120.00179 * 1.24647 * 9 6 5 11 11 C 1.37881 * 119.99907 * 181.24195 * 9 6 5 12 12 N 1.31503 * 119.99990 * 194.11443 * 11 9 6 13 13 Si 1.86805 * 119.99988 * 14.11141 * 11 9 6 14 14 H 1.48501 * 109.46572 * 84.53340 * 13 11 9 15 15 H 1.48499 * 109.47145 * 204.53375 * 13 11 9 16 16 H 1.48497 * 109.46943 * 324.53789 * 13 11 9 17 17 C 1.50703 * 109.46970 * 239.99677 * 2 1 3 18 18 C 1.39789 * 125.89171 * 84.72051 * 17 2 1 19 19 C 1.35531 * 107.88929 * 179.85238 * 18 17 2 20 20 N 1.34716 * 107.88829 * 0.31592 * 19 18 17 21 21 N 1.30707 * 125.89689 * 265.02507 * 17 2 1 22 22 C 1.47149 * 111.00896 * 179.97438 * 20 19 18 23 23 C 1.54368 * 105.57461 * 342.87155 * 22 20 19 24 24 C 1.51435 * 141.97020 * 179.81214 * 19 18 17 25 25 H 1.09008 * 109.47109 * 59.99693 * 1 2 3 26 26 H 1.08997 * 109.46923 * 300.00771 * 1 2 3 27 27 H 1.08999 * 109.47675 * 180.02562 * 1 2 3 28 28 H 1.00901 * 110.99972 * 38.95152 * 4 2 1 29 29 H 1.08998 * 109.46661 * 299.99975 * 5 4 2 30 30 H 1.09005 * 109.46878 * 60.00144 * 5 4 2 31 31 H 1.09005 * 109.47212 * 69.51474 * 7 6 5 32 32 H 1.08994 * 109.47603 * 189.51213 * 7 6 5 33 33 H 1.09005 * 109.46958 * 309.51980 * 7 6 5 34 34 H 1.08993 * 109.46865 * 60.00313 * 8 6 5 35 35 H 1.08998 * 109.46642 * 180.02562 * 8 6 5 36 36 H 1.08996 * 109.47116 * 299.99632 * 8 6 5 37 37 H 0.97004 * 120.00274 * 179.97438 * 12 11 9 38 38 H 1.07998 * 126.05356 * 359.97438 * 18 17 2 39 39 H 1.08997 * 110.22428 * 101.89017 * 22 20 19 40 40 H 1.09008 * 110.22776 * 223.83441 * 22 20 19 41 41 H 1.08999 * 110.96801 * 267.60072 * 23 22 20 42 42 H 1.09005 * 110.97198 * 143.83217 * 23 22 20 43 43 H 1.09001 * 110.48353 * 315.69908 * 24 19 18 44 44 H 1.08995 * 110.48544 * 78.34552 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 1.6451 -1.6888 3.8953 8 6 3.9921 -1.0864 3.2861 9 6 2.6600 0.4058 4.7514 10 1 2.3463 1.4331 4.6406 11 6 3.1201 -0.0469 5.9698 12 7 2.9230 0.6699 7.0546 13 14 4.0233 -1.6784 6.0796 14 1 5.4594 -1.4712 5.7637 15 1 3.8926 -2.2249 7.4542 16 1 3.4358 -2.6357 5.1083 17 6 2.0323 -0.7105 -1.2305 18 6 2.2072 -0.1377 -2.4935 19 6 2.6763 -1.0993 -3.3255 20 7 2.7875 -2.2403 -2.6179 21 7 2.3743 -1.9700 -1.3022 22 6 3.2935 -3.3359 -3.4599 23 6 3.0871 -2.8685 -4.9165 24 6 3.1047 -1.3311 -4.7593 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.4495 -1.4979 1.4100 29 1 2.7589 1.0461 2.1181 30 1 1.0870 0.6163 2.5525 31 1 1.7258 -2.4513 3.1205 32 1 1.9116 -2.1213 4.8596 33 1 0.6210 -1.3174 3.9341 34 1 4.6688 -0.2630 3.0577 35 1 4.3570 -1.6251 4.1606 36 1 3.9454 -1.7654 2.4348 37 1 3.2463 0.3513 7.9119 38 1 2.0062 0.8897 -2.7589 39 1 4.3526 -3.5032 -3.2643 40 1 2.7264 -4.2479 -3.2727 41 1 2.1271 -3.2102 -5.3036 42 1 3.9051 -3.2048 -5.5538 43 1 2.3974 -0.8691 -5.4482 44 1 4.1093 -0.9422 -4.9249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414175734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = 100.414317 kcal Electronic energy + Delta-G solvation = -21903.811569 eV Core-core repulsion = 18858.673364 eV Total energy + Delta-G solvation = -3045.138204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.63433 -37.77643 -36.41770 -34.50420 -31.74370 -30.89776 -29.52479 -28.64788 -26.81254 -26.09682 -25.15180 -24.40948 -22.77949 -21.70852 -20.18943 -19.00096 -18.61206 -16.80850 -15.96758 -15.86174 -15.41795 -14.94511 -14.47621 -14.16086 -13.99064 -13.59147 -13.48475 -12.98916 -12.77233 -12.69073 -12.60380 -12.37509 -12.29039 -12.02877 -11.90998 -11.75674 -11.55089 -11.32229 -11.04816 -10.87590 -10.35795 -10.20026 -9.97024 -9.89392 -9.76279 -8.94958 -8.86755 -8.46982 -8.40755 -8.28656 -7.73231 -6.01757 -3.96724 1.96264 2.36196 2.91663 3.39521 3.49554 3.51622 3.83440 4.23445 4.37755 4.50664 4.51335 4.80072 4.92009 5.12246 5.13776 5.21744 5.32008 5.35784 5.38389 5.42031 5.55083 5.59951 5.78697 5.91839 5.99642 6.07882 6.16928 6.23118 6.30328 6.42478 6.61714 6.74681 6.77278 6.79817 6.94678 6.95648 7.04659 7.13623 7.46112 7.60928 7.68180 7.89900 8.03566 8.07132 8.62437 9.03351 9.65215 11.11661 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030483 B = 0.003876 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.310408 B = 7222.416124 C = 7725.527311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.164 3.836 3 H 0.095 0.905 4 N -0.678 5.678 5 C 0.084 3.916 6 C 0.041 3.959 7 C -0.143 4.143 8 C -0.134 4.134 9 C -0.511 4.511 10 H 0.071 0.929 11 C 0.073 3.927 12 N -0.899 5.899 13 Si 0.888 3.112 14 H -0.288 1.288 15 H -0.309 1.309 16 H -0.248 1.248 17 C 0.098 3.902 18 C -0.255 4.255 19 C 0.049 3.951 20 N -0.401 5.401 21 N -0.245 5.245 22 C 0.131 3.869 23 C -0.132 4.132 24 C -0.064 4.064 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.342 0.658 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.043 0.957 35 H 0.028 0.972 36 H 0.044 0.956 37 H 0.262 0.738 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 -5.639 -25.369 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.051 3.949 3 H 0.113 0.887 4 N -0.309 5.309 5 C -0.044 4.044 6 C 0.040 3.960 7 C -0.201 4.201 8 C -0.191 4.191 9 C -0.549 4.549 10 H 0.089 0.911 11 C -0.129 4.129 12 N -0.536 5.536 13 Si 0.721 3.279 14 H -0.216 1.216 15 H -0.239 1.239 16 H -0.174 1.174 17 C -0.070 4.070 18 C -0.285 4.285 19 C -0.079 4.079 20 N -0.183 5.183 21 N -0.065 5.065 22 C 0.010 3.990 23 C -0.170 4.170 24 C -0.103 4.103 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.162 0.838 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.159 0.841 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.853 -6.881 -24.604 25.563 hybrid contribution -0.350 0.051 0.023 0.355 sum -1.203 -6.830 -24.582 25.541 Atomic orbital electron populations 1.22449 0.96214 1.02321 1.02411 1.19869 0.92189 0.96460 0.86406 0.88708 1.60536 1.56788 1.10042 1.03570 1.22003 0.98614 0.94546 0.89203 1.18454 0.91517 0.93247 0.92775 1.22285 0.99470 0.98184 1.00122 1.22148 0.98893 0.99601 0.98434 1.20884 1.43734 0.97712 0.92529 0.91062 1.24970 0.95580 0.96941 0.95379 1.69965 1.45521 1.39568 0.98570 0.87261 0.80278 0.85605 0.74775 1.21592 1.23868 1.17372 1.22338 0.98324 0.91290 0.95053 1.20455 1.15378 1.00321 0.92353 1.22111 1.01426 0.89779 0.94553 1.50205 1.50945 1.09658 1.07510 1.77550 1.19826 1.16682 0.92411 1.22223 1.00123 0.89015 0.87683 1.22785 1.04132 0.95258 0.94872 1.20836 1.02810 0.95859 0.90799 0.92176 0.91524 0.92510 0.83823 0.91798 0.95778 0.95339 0.92903 0.94225 0.93763 0.95348 0.93681 0.92825 0.84083 0.89674 0.89351 0.89660 0.88307 0.89051 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.14 37.16 0.34 -1.96 16 2 C 0.16 2.50 3.07 -68.87 -0.21 2.29 16 3 H 0.09 1.39 7.80 -51.93 -0.40 0.99 16 4 N -0.68 -12.20 5.29 -107.95 -0.57 -12.77 16 5 C 0.08 1.71 4.37 -3.82 -0.02 1.70 16 6 C 0.04 0.97 0.57 -155.66 -0.09 0.88 16 7 C -0.14 -3.20 7.24 37.16 0.27 -2.93 16 8 C -0.13 -3.13 7.54 37.16 0.28 -2.85 16 9 C -0.51 -14.39 8.62 -34.44 -0.30 -14.69 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.07 2.13 5.32 -17.82 -0.09 2.04 16 12 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 13 Si 0.89 22.84 22.79 -169.99 -3.87 18.96 16 14 H -0.29 -7.43 7.10 56.52 0.40 -7.03 16 15 H -0.31 -8.05 7.11 56.52 0.40 -7.65 16 16 H -0.25 -5.98 4.65 56.52 0.26 -5.72 16 17 C 0.10 1.54 6.19 -82.49 -0.51 1.02 16 18 C -0.26 -3.44 10.74 -39.97 -0.43 -3.87 16 19 C 0.05 0.59 7.49 -81.93 -0.61 -0.02 16 20 N -0.40 -5.44 4.85 -55.72 -0.27 -5.71 16 21 N -0.25 -4.17 12.48 33.64 0.42 -3.75 16 22 C 0.13 1.12 7.78 -2.97 -0.02 1.10 16 23 C -0.13 -0.69 7.17 -25.20 -0.18 -0.87 16 24 C -0.06 -0.45 6.86 -26.71 -0.18 -0.63 16 25 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.07 0.89 7.45 -51.93 -0.39 0.50 16 27 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.34 6.21 6.74 -39.29 -0.26 5.94 16 29 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 30 H 0.02 0.48 7.44 -51.93 -0.39 0.10 16 31 H 0.03 0.57 7.06 -51.93 -0.37 0.20 16 32 H 0.05 1.26 4.30 -51.93 -0.22 1.03 16 33 H 0.04 0.84 8.12 -51.93 -0.42 0.42 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.69 2.26 -51.93 -0.12 0.57 16 36 H 0.04 0.99 7.60 -51.93 -0.39 0.60 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -33.78 334.74 -7.54 -41.32 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.30 Total: 2.86 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.76 Total: -18.80 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.35 Total: -49.39 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -3.87 Total: 18.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.78 -7.54 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414175734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.737 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds