Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47675 * 2 1 4 4 N 1.46899 * 109.47070 * 120.00113 * 2 1 3 5 5 C 1.46905 * 110.99908 * 274.99747 * 4 2 1 6 6 C 1.52996 * 109.47199 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47388 * 300.00088 * 6 5 4 8 8 C 1.53007 * 109.46880 * 59.99872 * 6 5 4 9 9 C 1.50699 * 109.47056 * 179.97438 * 6 5 4 10 10 H 1.07988 * 120.00179 * 1.24647 * 9 6 5 11 11 C 1.37881 * 119.99907 * 181.24195 * 9 6 5 12 12 N 1.31503 * 119.99990 * 194.11443 * 11 9 6 13 13 Si 1.86805 * 119.99988 * 14.11141 * 11 9 6 14 14 H 1.48501 * 109.46572 * 84.53340 * 13 11 9 15 15 H 1.48499 * 109.47145 * 204.53375 * 13 11 9 16 16 H 1.48497 * 109.46943 * 324.53789 * 13 11 9 17 17 C 1.50703 * 109.46970 * 239.99677 * 2 1 3 18 18 C 1.39789 * 125.89171 * 84.72051 * 17 2 1 19 19 C 1.35531 * 107.88929 * 179.85238 * 18 17 2 20 20 N 1.34716 * 107.88829 * 0.31592 * 19 18 17 21 21 N 1.30707 * 125.89689 * 265.02507 * 17 2 1 22 22 C 1.47149 * 111.00896 * 179.97438 * 20 19 18 23 23 C 1.54368 * 105.57461 * 342.87155 * 22 20 19 24 24 C 1.51435 * 141.97020 * 179.81214 * 19 18 17 25 25 H 1.09008 * 109.47109 * 59.99693 * 1 2 3 26 26 H 1.08997 * 109.46923 * 300.00771 * 1 2 3 27 27 H 1.08999 * 109.47675 * 180.02562 * 1 2 3 28 28 H 1.00901 * 110.99972 * 38.95152 * 4 2 1 29 29 H 1.08998 * 109.46661 * 299.99975 * 5 4 2 30 30 H 1.09005 * 109.46878 * 60.00144 * 5 4 2 31 31 H 1.09005 * 109.47212 * 69.51474 * 7 6 5 32 32 H 1.08994 * 109.47603 * 189.51213 * 7 6 5 33 33 H 1.09005 * 109.46958 * 309.51980 * 7 6 5 34 34 H 1.08993 * 109.46865 * 60.00313 * 8 6 5 35 35 H 1.08998 * 109.46642 * 180.02562 * 8 6 5 36 36 H 1.08996 * 109.47116 * 299.99632 * 8 6 5 37 37 H 0.97004 * 120.00274 * 179.97438 * 12 11 9 38 38 H 1.07998 * 126.05356 * 359.97438 * 18 17 2 39 39 H 1.08997 * 110.22428 * 101.89017 * 22 20 19 40 40 H 1.09008 * 110.22776 * 223.83441 * 22 20 19 41 41 H 1.08999 * 110.96801 * 267.60072 * 23 22 20 42 42 H 1.09005 * 110.97198 * 143.83217 * 23 22 20 43 43 H 1.09001 * 110.48353 * 315.69908 * 24 19 18 44 44 H 1.08995 * 110.48544 * 78.34552 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 1.6451 -1.6888 3.8953 8 6 3.9921 -1.0864 3.2861 9 6 2.6600 0.4058 4.7514 10 1 2.3463 1.4331 4.6406 11 6 3.1201 -0.0469 5.9698 12 7 2.9230 0.6699 7.0546 13 14 4.0233 -1.6784 6.0796 14 1 5.4594 -1.4712 5.7637 15 1 3.8926 -2.2249 7.4542 16 1 3.4358 -2.6357 5.1083 17 6 2.0323 -0.7105 -1.2305 18 6 2.2072 -0.1377 -2.4935 19 6 2.6763 -1.0993 -3.3255 20 7 2.7875 -2.2403 -2.6179 21 7 2.3743 -1.9700 -1.3022 22 6 3.2935 -3.3359 -3.4599 23 6 3.0871 -2.8685 -4.9165 24 6 3.1047 -1.3311 -4.7593 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.4495 -1.4979 1.4100 29 1 2.7589 1.0461 2.1181 30 1 1.0870 0.6163 2.5525 31 1 1.7258 -2.4513 3.1205 32 1 1.9116 -2.1213 4.8596 33 1 0.6210 -1.3174 3.9341 34 1 4.6688 -0.2630 3.0577 35 1 4.3570 -1.6251 4.1606 36 1 3.9454 -1.7654 2.4348 37 1 3.2463 0.3513 7.9119 38 1 2.0062 0.8897 -2.7589 39 1 4.3526 -3.5032 -3.2643 40 1 2.7264 -4.2479 -3.2727 41 1 2.1271 -3.2102 -5.3036 42 1 3.9051 -3.2048 -5.5538 43 1 2.3974 -0.8691 -5.4482 44 1 4.1093 -0.9422 -4.9249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414175734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = 76.740876 kcal Electronic energy + Delta-G solvation = -21904.838126 eV Core-core repulsion = 18858.673364 eV Total energy + Delta-G solvation = -3046.164762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.54961 -39.26070 -37.55822 -35.86620 -33.82208 -31.82029 -30.75174 -29.62116 -27.95453 -27.60939 -27.10680 -26.10203 -23.95895 -22.38688 -21.18004 -20.52978 -20.00245 -18.04945 -17.53692 -17.30476 -16.68506 -16.38044 -15.65348 -15.46993 -14.99653 -14.83479 -14.66384 -14.53734 -14.16572 -14.02067 -13.91029 -13.71028 -13.63325 -13.46207 -13.16525 -12.74490 -12.61017 -12.40904 -12.37056 -12.20009 -11.94554 -11.88524 -11.78963 -11.61684 -11.31872 -10.94603 -10.57306 -10.33169 -9.91580 -9.38091 -9.16510 -8.29425 -6.27369 1.02457 1.34501 1.38010 1.48221 1.54362 1.87180 2.35160 3.07234 3.12996 3.43200 3.68149 3.78197 3.95700 4.14402 4.19449 4.24503 4.31856 4.44684 4.47096 4.57715 4.60355 4.64498 4.80670 4.84853 4.85145 4.87621 4.89952 4.93900 5.00994 5.05144 5.09455 5.15592 5.19761 5.21197 5.25539 5.31002 5.58158 5.75400 5.80973 5.84792 6.06215 6.23957 6.35690 6.57483 6.79229 7.00401 7.37744 8.87650 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030483 B = 0.003876 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.310408 B = 7222.416124 C = 7725.527311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.163 3.837 3 H 0.096 0.904 4 N -0.679 5.679 5 C 0.099 3.901 6 C 0.037 3.963 7 C -0.138 4.138 8 C -0.128 4.128 9 C -0.510 4.510 10 H 0.035 0.965 11 C 0.020 3.980 12 N -0.946 5.946 13 Si 0.941 3.059 14 H -0.287 1.287 15 H -0.313 1.313 16 H -0.219 1.219 17 C 0.084 3.916 18 C -0.281 4.281 19 C 0.054 3.946 20 N -0.410 5.410 21 N -0.297 5.297 22 C 0.114 3.886 23 C -0.116 4.116 24 C -0.063 4.063 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.342 0.658 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.037 0.963 35 H 0.021 0.979 36 H 0.060 0.940 37 H 0.263 0.737 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -7.330 -28.790 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 H 0.114 0.886 4 N -0.310 5.310 5 C -0.030 4.030 6 C 0.035 3.965 7 C -0.196 4.196 8 C -0.185 4.185 9 C -0.549 4.549 10 H 0.053 0.947 11 C -0.177 4.177 12 N -0.586 5.586 13 Si 0.772 3.228 14 H -0.215 1.215 15 H -0.243 1.243 16 H -0.144 1.144 17 C -0.082 4.082 18 C -0.311 4.311 19 C -0.075 4.075 20 N -0.193 5.193 21 N -0.118 5.118 22 C -0.005 4.005 23 C -0.154 4.154 24 C -0.101 4.101 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.161 0.839 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.174 0.826 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.150 0.850 43 H 0.130 0.870 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.542 -8.586 -28.064 29.353 hybrid contribution -0.455 0.632 0.980 1.252 sum -0.997 -7.954 -27.084 28.245 Atomic orbital electron populations 1.22332 0.94672 1.02198 1.03147 1.19916 0.93441 0.96246 0.85311 0.88587 1.60440 1.57551 1.09700 1.03356 1.21677 0.98041 0.94213 0.89031 1.18454 0.92524 0.93152 0.92330 1.22179 0.99248 0.98093 1.00063 1.22066 0.98208 0.99570 0.98623 1.21202 1.42377 0.97014 0.94271 0.94708 1.25723 0.96439 1.00502 0.95043 1.70093 1.47406 1.41844 0.99267 0.86379 0.78976 0.82376 0.75090 1.21528 1.24308 1.14352 1.22365 0.98750 0.91422 0.95704 1.20735 1.16714 1.01616 0.92043 1.22912 0.99208 0.88711 0.96679 1.50598 1.50422 1.11500 1.06783 1.77370 1.21822 1.17475 0.95153 1.22700 1.00414 0.88360 0.89056 1.22848 1.06077 0.93671 0.92779 1.21071 1.04002 0.97313 0.87719 0.90306 0.91844 0.92991 0.83877 0.92713 0.95993 0.92866 0.94281 0.93769 0.94386 0.96046 0.92094 0.92810 0.82601 0.89023 0.89021 0.88705 0.84974 0.86988 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 9.14 71.98 0.66 -3.52 16 2 C 0.16 4.89 3.07 44.17 0.14 5.02 16 3 H 0.10 2.80 7.80 -2.39 -0.02 2.78 16 4 N -0.68 -23.95 5.29 -495.44 -2.62 -26.57 16 5 C 0.10 4.01 4.37 86.30 0.38 4.39 16 6 C 0.04 1.70 0.57 -52.93 -0.03 1.67 16 7 C -0.14 -5.98 7.24 71.98 0.52 -5.46 16 8 C -0.13 -5.81 7.54 71.98 0.54 -5.27 16 9 C -0.51 -29.36 8.62 25.60 0.22 -29.13 16 10 H 0.03 2.20 7.99 -2.92 -0.02 2.17 16 11 C 0.02 1.19 5.32 84.66 0.45 1.64 16 12 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 13 Si 0.94 47.05 22.79 68.60 1.56 48.61 16 14 H -0.29 -14.27 7.10 99.48 0.71 -13.56 16 15 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 16 H -0.22 -9.92 4.65 99.48 0.46 -9.46 16 17 C 0.08 2.59 6.19 43.10 0.27 2.86 16 18 C -0.28 -7.23 10.74 22.02 0.24 -7.00 16 19 C 0.05 1.19 7.49 41.72 0.31 1.50 16 20 N -0.41 -10.48 4.85 -330.19 -1.60 -12.08 16 21 N -0.30 -9.92 12.48 -47.49 -0.59 -10.51 16 22 C 0.11 1.68 7.78 86.72 0.67 2.35 16 23 C -0.12 -0.73 7.17 31.59 0.23 -0.50 16 24 C -0.06 -0.63 6.86 30.61 0.21 -0.42 16 25 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.06 1.64 7.45 -2.39 -0.02 1.62 16 27 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 28 H 0.34 12.03 6.74 -89.69 -0.60 11.42 16 29 H 0.05 2.29 8.05 -2.39 -0.02 2.27 16 30 H 0.02 0.89 7.44 -2.38 -0.02 0.87 16 31 H 0.05 2.03 7.06 -2.38 -0.02 2.01 16 32 H 0.04 1.78 4.30 -2.39 -0.01 1.77 16 33 H 0.04 1.83 8.12 -2.38 -0.02 1.81 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.02 1.00 2.26 -2.39 -0.01 0.99 16 36 H 0.06 2.56 7.60 -2.39 -0.02 2.54 16 37 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 38 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.13 0.02 8.14 -2.38 -0.02 0.00 16 43 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -74.95 334.74 1.99 -72.96 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.14 Total: 19.63 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 4.80 Total: -31.87 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -4.51 Total: -109.33 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.56 Total: 48.61 kcal Total: -74.95 1.99 -72.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414175734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.698 kcal (2) G-P(sol) polarization free energy of solvation -74.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds