Wall clock time and date at job start Mon Mar 30 2020 01:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36879 * 126.39638 * 2 1 4 4 C 1.34665 * 106.81907 * 180.24974 * 3 2 1 5 5 N 1.34130 * 108.02044 * 359.74454 * 4 3 2 6 6 C 1.30500 * 109.25324 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.65119 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47019 * 165.02911 * 7 6 5 9 9 N 1.46900 * 109.46692 * 45.03041 * 7 6 5 10 10 C 1.46904 * 111.00228 * 139.75353 * 9 7 6 11 11 C 1.52991 * 109.47302 * 176.50140 * 10 9 7 12 12 C 1.53004 * 109.47332 * 299.99870 * 11 10 9 13 13 C 1.53003 * 109.47242 * 60.00094 * 11 10 9 14 14 C 1.50699 * 109.47405 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99552 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00750 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99299 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00289 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47308 * 60.00353 * 18 16 14 20 20 H 1.48506 * 109.47069 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47165 * 299.99988 * 18 16 14 22 22 C 1.52992 * 109.47291 * 285.03237 * 7 6 5 23 23 C 1.53005 * 117.50359 * 133.96482 * 22 7 6 24 24 C 1.52997 * 117.50216 * 65.30299 * 22 7 6 25 25 H 1.08997 * 109.47512 * 270.19019 * 1 2 3 26 26 H 1.09003 * 109.46934 * 30.19298 * 1 2 3 27 27 H 1.09001 * 109.46968 * 150.18755 * 1 2 3 28 28 H 1.08001 * 126.59484 * 359.97224 * 3 2 1 29 29 H 1.07996 * 125.99498 * 179.72293 * 4 3 2 30 30 H 1.00899 * 111.00675 * 15.79741 * 9 7 6 31 31 H 1.08996 * 109.46983 * 296.50396 * 10 9 7 32 32 H 1.09005 * 109.46896 * 56.50092 * 10 9 7 33 33 H 1.09004 * 109.46704 * 60.00062 * 12 11 10 34 34 H 1.09003 * 109.47016 * 179.97438 * 12 11 10 35 35 H 1.08993 * 109.47133 * 299.99850 * 12 11 10 36 36 H 1.08996 * 109.46999 * 59.99771 * 13 11 10 37 37 H 1.09007 * 109.47054 * 180.02562 * 13 11 10 38 38 H 1.08994 * 109.47025 * 299.99993 * 13 11 10 39 39 H 0.97006 * 119.99437 * 179.97438 * 17 16 14 40 40 H 1.09007 * 115.55225 * 279.62554 * 22 7 6 41 41 H 1.09007 * 117.49309 * 359.97438 * 23 22 7 42 42 H 1.08992 * 117.50306 * 145.01915 * 23 22 7 43 43 H 1.09008 * 117.49615 * 214.97994 * 24 22 7 44 44 H 1.08995 * 117.49918 * 359.97384 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6506 -0.0056 5 7 3.5096 -0.6902 -0.0033 6 6 2.2664 -1.0869 0.0041 7 6 1.8018 -2.5206 0.0084 8 1 0.7469 -2.5598 0.2798 9 7 2.5875 -3.2869 0.9848 10 6 1.7362 -4.2307 1.7213 11 6 2.6014 -5.0694 2.6640 12 6 3.6378 -5.8461 1.8495 13 6 3.3169 -4.1484 3.6543 14 6 1.7280 -6.0372 3.4200 15 1 0.6623 -6.0528 3.2451 16 6 2.2893 -6.9034 4.3341 17 7 3.5870 -6.8847 4.5466 18 14 1.2066 -8.1035 5.2705 19 1 0.5118 -8.9971 4.3094 20 1 2.0464 -8.9175 6.1857 21 1 0.2010 -7.3496 6.0614 22 6 1.9927 -3.1227 -1.3850 23 6 2.6301 -4.5108 -1.4736 24 6 3.4258 -3.2743 -1.8989 25 1 -0.3634 0.0034 1.0276 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3633 -0.8917 -0.5109 28 1 1.9613 2.1346 -0.0004 29 1 4.4368 1.2611 -0.0114 30 1 3.0771 -2.6721 1.6176 31 1 0.9978 -3.6774 2.3015 32 1 1.2264 -4.8869 1.0158 33 1 4.2696 -5.1458 1.3031 34 1 4.2545 -6.4433 2.5213 35 1 3.1281 -6.5023 1.1441 36 1 2.5786 -3.5950 4.2346 37 1 3.9337 -4.7459 4.3257 38 1 3.9486 -3.4481 3.1079 39 1 3.9819 -7.4939 5.1900 40 1 1.2202 -2.8764 -2.1135 41 1 2.9138 -4.9949 -0.5391 42 1 2.2773 -5.1774 -2.2605 43 1 3.5961 -3.1278 -2.9656 44 1 4.2326 -2.9446 -1.2445 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414175946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:53 Heat of formation + Delta-G solvation = 77.191002 kcal Electronic energy + Delta-G solvation = -22608.736347 eV Core-core repulsion = 19562.591104 eV Total energy + Delta-G solvation = -3046.145243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.00949 -39.43309 -37.56132 -34.91013 -34.84976 -32.92887 -30.55890 -28.02089 -27.50721 -27.21890 -27.15503 -25.08011 -23.02921 -22.25295 -21.80736 -20.26957 -20.06893 -18.17598 -17.69145 -17.12664 -16.74700 -16.54823 -15.89766 -15.60928 -15.14745 -14.72213 -14.57104 -14.44872 -14.02803 -13.83872 -13.71935 -13.57345 -13.29196 -13.07372 -12.92506 -12.55164 -12.47873 -12.32686 -12.12221 -12.10954 -11.93841 -11.26929 -11.06051 -11.02108 -10.79857 -10.67764 -10.57295 -10.47987 -10.30253 -9.29393 -9.14448 -7.92783 -6.10074 1.13150 1.45596 1.46264 1.53011 1.91899 2.25649 2.49115 3.02127 3.29241 3.34158 3.60372 3.95212 3.98224 4.06191 4.23021 4.37296 4.39746 4.48359 4.56884 4.61349 4.65150 4.70650 4.72227 4.84515 4.91107 5.01010 5.03696 5.16045 5.22125 5.31618 5.39713 5.48798 5.50611 5.58807 5.70132 5.72970 5.82194 5.92195 6.15326 6.22710 6.33298 6.37906 6.50417 6.61387 6.99666 7.27699 7.57448 9.05141 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.004718 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.617120 B = 5933.846770 C = 6224.210185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.459 5.459 3 C -0.048 4.048 4 C -0.062 4.062 5 N -0.504 5.504 6 C 0.186 3.814 7 C 0.203 3.797 8 H 0.069 0.931 9 N -0.663 5.663 10 C 0.092 3.908 11 C 0.065 3.935 12 C -0.101 4.101 13 C -0.119 4.119 14 C -0.524 4.524 15 H 0.048 0.952 16 C 0.022 3.978 17 N -0.904 5.904 18 Si 0.945 3.055 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.146 4.146 23 C -0.170 4.170 24 C -0.154 4.154 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.210 0.790 29 H 0.181 0.819 30 H 0.339 0.661 31 H 0.007 0.993 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.016 0.984 36 H 0.013 0.987 37 H 0.055 0.945 38 H 0.024 0.976 39 H 0.256 0.744 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 14.954 -11.479 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.142 5.142 3 C -0.181 4.181 4 C -0.210 4.210 5 N -0.223 5.223 6 C -0.077 4.077 7 C 0.092 3.908 8 H 0.087 0.913 9 N -0.296 5.296 10 C -0.037 4.037 11 C 0.065 3.935 12 C -0.159 4.159 13 C -0.177 4.177 14 C -0.562 4.562 15 H 0.066 0.934 16 C -0.177 4.177 17 N -0.543 5.543 18 Si 0.771 3.229 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.165 4.165 23 C -0.207 4.207 24 C -0.191 4.191 25 H 0.100 0.900 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.227 0.773 29 H 0.198 0.802 30 H 0.159 0.841 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.132 0.868 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.166 13.891 -11.818 19.253 hybrid contribution -1.407 0.399 1.401 2.026 sum -7.573 14.291 -10.417 19.238 Atomic orbital electron populations 1.22355 0.74721 1.06345 1.04598 1.45572 1.08878 1.06053 1.53675 1.23225 0.90762 0.93620 1.10532 1.22758 0.98033 0.90922 1.09324 1.70171 1.19541 1.13001 1.19571 1.23337 0.86257 0.91112 1.06978 1.19265 0.95512 0.82634 0.93435 0.91282 1.60510 1.28540 1.20418 1.20084 1.21952 0.93666 0.93518 0.94539 1.18078 0.92613 0.91798 0.91055 1.21444 0.98669 0.98420 0.97380 1.21653 0.98766 0.97572 0.99716 1.21390 0.93608 1.18926 1.22319 0.93405 1.25547 0.95913 0.98595 0.97670 1.69987 1.10933 1.38208 1.35211 0.85831 0.78964 0.79412 0.78645 1.19943 1.21396 1.20142 1.22216 0.97361 1.01100 0.95851 1.23029 1.03809 0.90444 1.03382 1.22649 0.94277 1.02190 1.00028 0.90010 0.86664 0.88944 0.77326 0.80205 0.84091 0.97452 0.92211 0.95084 0.93682 0.96512 0.96757 0.92632 0.95709 0.93445 0.86806 0.88420 0.88780 0.89077 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 10.75 127.77 1.37 2.17 16 2 N -0.46 -10.06 3.15 -537.61 -1.69 -11.76 16 3 C -0.05 -0.96 11.58 83.09 0.96 0.00 16 4 C -0.06 -1.61 11.87 83.52 0.99 -0.62 16 5 N -0.50 -16.35 10.60 -188.13 -1.99 -18.34 16 6 C 0.19 5.40 6.16 138.13 0.85 6.25 16 7 C 0.20 6.05 2.80 44.17 0.12 6.17 16 8 H 0.07 1.89 6.60 -2.39 -0.02 1.87 16 9 N -0.66 -24.02 3.98 -495.47 -1.97 -25.99 16 10 C 0.09 3.74 3.72 86.30 0.32 4.06 16 11 C 0.07 3.16 0.57 -52.93 -0.03 3.13 16 12 C -0.10 -5.00 7.14 71.98 0.51 -4.49 16 13 C -0.12 -5.86 7.91 71.98 0.57 -5.29 16 14 C -0.52 -28.09 8.01 25.60 0.21 -27.89 16 15 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 16 C 0.02 1.18 5.15 84.65 0.44 1.62 16 17 N -0.90 -51.17 9.35 21.45 0.20 -50.97 16 18 Si 0.94 43.35 29.54 68.60 2.03 45.37 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 22 C -0.15 -4.05 5.77 -10.80 -0.06 -4.12 16 23 C -0.17 -5.19 9.76 30.62 0.30 -4.89 16 24 C -0.15 -4.62 9.73 30.62 0.30 -4.32 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 1.12 7.33 -2.39 -0.02 1.11 16 28 H 0.21 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.34 13.40 6.21 -89.69 -0.56 12.85 16 31 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 2.43 7.86 -2.38 -0.02 2.41 16 33 H 0.03 1.44 7.40 -2.39 -0.02 1.42 16 34 H 0.04 2.47 6.07 -2.39 -0.01 2.46 16 35 H 0.02 0.78 7.87 -2.39 -0.02 0.76 16 36 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 3.04 6.07 -2.38 -0.01 3.02 16 38 H 0.02 1.12 6.65 -2.39 -0.02 1.10 16 39 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 40 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.10 3.61 4.86 -2.38 -0.01 3.60 16 42 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.08 2.93 7.82 -2.39 -0.02 2.91 16 Total: -1.00 -63.96 342.77 3.84 -60.12 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.42 Total: 29.78 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 6.85 Total: -28.21 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -5.46 Total: -107.06 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -63.96 3.84 -60.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414175946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.313 kcal (2) G-P(sol) polarization free energy of solvation -63.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds