Wall clock time and date at job start Mon Mar 30 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36878 * 126.40078 * 2 1 4 4 C 1.34667 * 106.81527 * 180.11434 * 3 2 1 5 5 N 1.34121 * 108.02525 * 359.58973 * 4 3 2 6 6 C 1.30506 * 109.25471 * 0.25924 * 5 4 3 7 7 C 1.50696 * 125.64831 * 179.97438 * 6 5 4 8 8 H 1.09010 * 109.46899 * 195.02445 * 7 6 5 9 9 N 1.46895 * 109.47253 * 315.02064 * 7 6 5 10 10 C 1.46898 * 111.00446 * 273.51695 * 9 7 6 11 11 C 1.52996 * 109.47485 * 185.26318 * 10 9 7 12 12 C 1.53002 * 109.46953 * 300.00131 * 11 10 9 13 13 C 1.52999 * 109.47326 * 60.00016 * 11 10 9 14 14 C 1.50700 * 109.47468 * 180.02562 * 11 10 9 15 15 H 1.08008 * 119.99648 * 357.33353 * 14 11 10 16 16 C 1.37872 * 120.00198 * 177.33019 * 14 11 10 17 17 N 1.31515 * 119.99908 * 6.28449 * 16 14 11 18 18 Si 1.86797 * 120.00048 * 186.27883 * 16 14 11 19 19 H 1.48503 * 109.47021 * 94.99257 * 18 16 14 20 20 H 1.48501 * 109.47509 * 214.99167 * 18 16 14 21 21 H 1.48500 * 109.47206 * 334.99499 * 18 16 14 22 22 C 1.52997 * 109.47132 * 75.02702 * 7 6 5 23 23 C 1.53005 * 117.49438 * 244.43621 * 22 7 6 24 24 C 1.53006 * 117.49848 * 175.78092 * 22 7 6 25 25 H 1.09000 * 109.47504 * 270.35082 * 1 2 3 26 26 H 1.09005 * 109.46805 * 30.35116 * 1 2 3 27 27 H 1.08999 * 109.47431 * 150.34629 * 1 2 3 28 28 H 1.07997 * 126.59076 * 0.02562 * 3 2 1 29 29 H 1.08007 * 125.98558 * 179.84178 * 4 3 2 30 30 H 1.00906 * 111.00146 * 37.47270 * 9 7 6 31 31 H 1.08997 * 109.47059 * 305.26604 * 10 9 7 32 32 H 1.09008 * 109.47047 * 65.25927 * 10 9 7 33 33 H 1.08997 * 109.47521 * 64.47670 * 12 11 10 34 34 H 1.09003 * 109.46943 * 184.47596 * 12 11 10 35 35 H 1.08997 * 109.47213 * 304.47586 * 12 11 10 36 36 H 1.08997 * 109.46831 * 59.99951 * 13 11 10 37 37 H 1.09000 * 109.47789 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.46950 * 300.00477 * 13 11 10 39 39 H 0.97005 * 120.00012 * 179.97438 * 17 16 14 40 40 H 1.08999 * 115.55592 * 30.10423 * 22 7 6 41 41 H 1.08993 * 117.49942 * 0.02562 * 23 22 7 42 42 H 1.09003 * 117.49609 * 145.01988 * 23 22 7 43 43 H 1.09002 * 117.49415 * 214.97742 * 24 22 7 44 44 H 1.09000 * 117.49709 * 359.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5460 0.6503 -0.0026 5 7 3.5095 -0.6904 0.0050 6 6 2.2662 -1.0871 0.0066 7 6 1.8017 -2.5206 0.0140 8 1 0.7455 -2.5617 -0.2526 9 7 2.5831 -3.2936 -0.9606 10 6 1.9865 -3.2083 -2.3002 11 6 2.7482 -4.1272 -3.2573 12 6 4.2138 -3.6928 -3.3231 13 6 2.6660 -5.5695 -2.7534 14 6 2.1365 -4.0392 -4.6318 15 1 1.2628 -3.4258 -4.7957 16 6 2.6922 -4.7416 -5.6800 17 7 3.6781 -5.5834 -5.4581 18 14 2.0448 -4.4979 -7.4151 19 1 2.8763 -3.4868 -8.1162 20 1 2.1058 -5.7859 -8.1518 21 1 0.6376 -4.0272 -7.3568 22 6 1.9985 -3.1133 1.4107 23 6 2.9966 -4.2639 1.5556 24 6 1.4936 -4.5375 1.6514 25 1 -0.3634 0.0063 1.0276 26 1 -0.3633 0.8869 -0.5193 27 1 -0.3634 -0.8930 -0.5084 28 1 1.9614 2.1345 0.0004 29 1 4.4369 1.2609 -0.0057 30 1 3.5457 -2.9913 -0.9736 31 1 0.9424 -3.5177 -2.2533 32 1 2.0450 -2.1807 -2.6593 33 1 4.6781 -3.8314 -2.3468 34 1 4.7386 -4.2960 -4.0640 35 1 4.2688 -2.6415 -3.6056 36 1 1.6219 -5.8789 -2.7065 37 1 3.2091 -6.2242 -3.4350 38 1 3.1087 -5.6328 -1.7593 39 1 4.0689 -6.0779 -6.1955 40 1 1.9225 -2.4061 2.2366 41 1 3.5132 -4.5983 0.6560 42 1 3.5769 -4.3138 2.4770 43 1 1.0856 -4.7671 2.6358 44 1 1.0208 -5.0519 0.8148 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414175947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:57 Heat of formation + Delta-G solvation = 89.201153 kcal Electronic energy + Delta-G solvation = -22620.310937 eV Core-core repulsion = 19574.686493 eV Total energy + Delta-G solvation = -3045.624444 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.99008 -37.99756 -36.07418 -33.94800 -33.41541 -31.12170 -29.18282 -27.12693 -26.01569 -25.47016 -25.16300 -23.46520 -21.92392 -21.28227 -20.71601 -19.11139 -18.41316 -17.25902 -15.94006 -15.64188 -15.40578 -15.10258 -14.66388 -14.30832 -13.80151 -13.59405 -13.26760 -12.91332 -12.82374 -12.81085 -12.41201 -12.28041 -11.84583 -11.31780 -11.12144 -11.02048 -10.97012 -10.59776 -10.53749 -10.15604 -10.07547 -9.98795 -9.78780 -9.70008 -9.49306 -9.34160 -9.04762 -8.60371 -8.30093 -8.21651 -7.77827 -5.87900 -3.97614 2.13661 2.83707 3.31870 3.32574 3.39992 3.42105 4.09320 4.42862 4.49648 4.62622 4.81440 4.93699 4.99571 5.16023 5.20581 5.31903 5.36892 5.37328 5.53256 5.64448 5.79541 5.89302 5.97749 6.18473 6.29806 6.35465 6.46935 6.49500 6.74161 6.78488 6.86584 6.96422 7.15960 7.24860 7.26930 7.44564 7.52779 7.73465 7.82645 7.85417 8.01391 8.26837 8.29146 8.40731 8.60521 9.03406 9.66654 11.12371 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.005411 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.889106 B = 5173.715053 C = 5921.117386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.459 5.459 3 C -0.070 4.070 4 C -0.027 4.027 5 N -0.482 5.482 6 C 0.193 3.807 7 C 0.200 3.800 8 H 0.084 0.916 9 N -0.660 5.660 10 C 0.075 3.925 11 C 0.073 3.927 12 C -0.131 4.131 13 C -0.118 4.118 14 C -0.507 4.507 15 H 0.050 0.950 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.886 3.114 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.145 4.145 23 C -0.155 4.155 24 C -0.170 4.170 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.169 0.831 29 H 0.166 0.834 30 H 0.357 0.643 31 H 0.053 0.947 32 H 0.011 0.989 33 H 0.015 0.985 34 H 0.080 0.920 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.075 0.925 38 H 0.020 0.980 39 H 0.258 0.742 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 9.175 13.482 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.142 5.142 3 C -0.203 4.203 4 C -0.175 4.175 5 N -0.200 5.200 6 C -0.072 4.072 7 C 0.087 3.913 8 H 0.102 0.898 9 N -0.292 5.292 10 C -0.053 4.053 11 C 0.072 3.928 12 C -0.188 4.188 13 C -0.176 4.176 14 C -0.545 4.545 15 H 0.068 0.932 16 C -0.135 4.135 17 N -0.520 5.520 18 Si 0.714 3.286 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.164 4.164 23 C -0.192 4.192 24 C -0.207 4.207 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.187 0.813 29 H 0.184 0.816 30 H 0.179 0.821 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.099 0.901 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.309 7.932 13.502 16.535 hybrid contribution -0.904 2.034 -1.295 2.575 sum -6.213 9.966 12.207 16.939 Atomic orbital electron populations 1.22030 0.77086 1.04749 1.03343 1.45376 1.07410 1.06741 1.54684 1.22626 0.91574 0.92397 1.13671 1.22263 0.96224 0.91372 1.07676 1.70143 1.18508 1.11695 1.19638 1.24633 0.86137 0.91972 1.04438 1.19533 0.97744 0.80829 0.93198 0.89800 1.60878 1.06999 1.54082 1.07279 1.22221 0.98224 0.97919 0.86982 1.18047 0.91679 0.91482 0.91601 1.21781 0.99270 0.98769 0.99029 1.21658 0.98568 0.99349 0.97999 1.21103 1.12664 1.27594 0.93175 0.93209 1.24863 0.95202 0.94893 0.98507 1.69855 1.25430 1.25863 1.30884 0.86691 0.79111 0.77459 0.85334 1.20921 1.21310 1.20152 1.22062 1.07594 0.91133 0.95652 1.22894 0.92001 1.01065 1.03254 1.22876 0.98176 0.97667 1.02022 0.90613 0.89771 0.89338 0.81330 0.81628 0.82130 0.92888 0.97116 0.96633 0.90084 0.96495 0.96467 0.90638 0.96053 0.93221 0.88920 0.86499 0.90177 0.89849 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.93 59.85 0.65 1.29 16 2 N -0.46 -6.02 3.15 -121.28 -0.38 -6.41 16 3 C -0.07 -0.88 11.58 -16.56 -0.19 -1.07 16 4 C -0.03 -0.39 11.87 -17.82 -0.21 -0.60 16 5 N -0.48 -8.38 10.65 -10.82 -0.12 -8.50 16 6 C 0.19 3.05 6.55 -155.41 -1.02 2.03 16 7 C 0.20 3.07 2.70 -68.87 -0.19 2.88 16 8 H 0.08 1.21 6.29 -51.92 -0.33 0.89 16 9 N -0.66 -12.00 3.63 -107.96 -0.39 -12.39 16 10 C 0.07 1.58 4.41 -3.83 -0.02 1.56 16 11 C 0.07 1.77 0.57 -155.66 -0.09 1.68 16 12 C -0.13 -3.23 7.82 37.16 0.29 -2.94 16 13 C -0.12 -2.87 8.12 37.16 0.30 -2.57 16 14 C -0.51 -13.79 8.01 -34.44 -0.28 -14.06 16 15 H 0.05 1.36 7.75 -52.48 -0.41 0.95 16 16 C 0.07 1.82 5.11 -17.82 -0.09 1.73 16 17 N -0.88 -24.68 9.38 55.43 0.52 -24.16 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C -0.14 -1.99 5.72 -90.62 -0.52 -2.51 16 23 C -0.15 -2.18 9.84 -26.69 -0.26 -2.44 16 24 C -0.17 -2.19 10.22 -26.69 -0.27 -2.46 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.79 6.91 -51.93 -0.36 0.44 16 28 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.17 2.00 8.06 -52.48 -0.42 1.58 16 30 H 0.36 7.06 6.33 -39.29 -0.25 6.81 16 31 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 32 H 0.01 0.24 8.13 -51.92 -0.42 -0.18 16 33 H 0.01 0.34 6.94 -51.93 -0.36 -0.02 16 34 H 0.08 2.20 5.99 -51.93 -0.31 1.89 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 2.03 6.05 -51.93 -0.31 1.71 16 38 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 41 H 0.12 1.90 6.88 -51.93 -0.36 1.54 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -30.04 347.43 -9.31 -39.36 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.27 Total: 8.05 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.89 Total: -17.49 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.37 Total: -51.46 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.04 -9.31 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414175947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.559 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds