Wall clock time and date at job start Mon Mar 30 2020 02:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47381 * 2 1 4 4 N 1.40080 * 126.03498 * 89.97854 * 3 2 1 5 5 C 1.30841 * 108.20208 * 180.02562 * 4 3 2 6 6 C 1.50700 * 125.89763 * 180.02562 * 5 4 3 7 7 C 1.39867 * 108.20624 * 359.97438 * 5 4 3 8 8 C 1.50696 * 126.04483 * 179.97438 * 7 5 4 9 9 N 1.46902 * 109.47036 * 90.03050 * 8 7 5 10 10 C 1.46899 * 111.00001 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47145 * 174.70311 * 10 9 8 12 12 C 1.50697 * 115.55107 * 65.16316 * 11 10 9 13 13 H 1.08009 * 120.00231 * 264.96521 * 12 11 10 14 14 C 1.37877 * 119.99901 * 84.96668 * 12 11 10 15 15 N 1.31518 * 119.99893 * 353.06607 * 14 12 11 16 16 Si 1.86799 * 119.99865 * 173.06417 * 14 12 11 17 17 H 1.48495 * 109.47511 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47127 * 120.00385 * 16 14 12 19 19 H 1.48506 * 109.46995 * 239.99848 * 16 14 12 20 20 C 1.53003 * 117.49613 * 279.49978 * 11 10 9 21 21 C 1.52999 * 117.49838 * 210.83704 * 11 10 9 22 22 C 1.34948 * 126.03737 * 270.26486 * 3 2 1 23 23 C 1.50703 * 126.12725 * 359.97438 * 22 3 2 24 24 H 1.09003 * 109.47259 * 59.99469 * 1 2 3 25 25 H 1.09003 * 109.47289 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46969 * 300.00073 * 1 2 3 27 27 H 1.09003 * 109.46516 * 240.00087 * 2 1 3 28 28 H 1.09003 * 109.47259 * 120.00531 * 2 1 3 29 29 H 1.08999 * 109.47037 * 269.97393 * 6 5 4 30 30 H 1.09008 * 109.47038 * 29.97296 * 6 5 4 31 31 H 1.09003 * 109.47098 * 149.96957 * 6 5 4 32 32 H 1.09008 * 109.46868 * 330.03501 * 8 7 5 33 33 H 1.09002 * 109.47575 * 210.03218 * 8 7 5 34 34 H 1.00895 * 111.00096 * 56.04668 * 9 8 7 35 35 H 1.09004 * 109.46918 * 294.69866 * 10 9 8 36 36 H 1.08995 * 109.47500 * 54.70312 * 10 9 8 37 37 H 0.96999 * 119.99482 * 185.03379 * 15 14 12 38 38 H 1.08997 * 117.49718 * 359.97438 * 20 11 10 39 39 H 1.08997 * 117.49934 * 145.02356 * 20 11 10 40 40 H 1.09001 * 117.49700 * 214.97603 * 21 11 10 41 41 H 1.09001 * 117.49918 * 359.97438 * 21 11 10 42 42 H 1.08993 * 109.47650 * 270.18206 * 23 22 3 43 43 H 1.09004 * 109.47220 * 30.18712 * 23 22 3 44 44 H 1.09005 * 109.46957 * 150.17760 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2927 2.1583 1.1328 5 6 2.7075 3.3327 0.7321 6 6 3.1126 4.4782 1.6236 7 6 2.7113 3.3410 -0.6666 8 6 3.1188 4.4954 -1.5453 9 7 4.5572 4.4096 -1.8307 10 6 4.9914 5.5218 -2.6865 11 6 6.5116 5.4739 -2.8531 12 6 7.0471 4.2731 -3.5896 13 1 7.3893 3.4097 -3.0382 14 6 7.1004 4.2767 -4.9673 15 7 6.5604 5.2670 -5.6437 16 14 7.9396 2.8751 -5.8732 17 1 8.4632 1.8933 -4.8899 18 1 6.9602 2.2068 -6.7673 19 1 9.0632 3.4114 -6.6828 20 6 7.3649 6.0455 -1.7190 21 6 7.2437 6.8038 -3.0433 22 6 2.2783 2.1314 -1.0912 23 6 2.1187 1.6982 -2.5258 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2414 5.0970 1.8385 30 1 3.5191 4.0866 2.5562 31 1 3.8703 5.0794 1.1210 32 1 2.9051 5.4342 -1.0342 33 1 2.5598 4.4554 -2.4803 34 1 4.7910 3.5205 -2.2464 35 1 4.5159 5.4355 -3.6636 36 1 4.7061 6.4676 -2.2259 37 1 6.5331 5.2343 -6.6127 38 1 6.8432 6.4561 -0.8546 39 1 8.3138 5.5534 -1.5060 40 1 8.1130 6.8101 -3.7009 41 1 6.6424 7.7129 -3.0502 42 1 3.0480 1.2486 -2.8752 43 1 1.3124 0.9681 -2.5974 44 1 1.8798 2.5647 -3.1425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430046483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:16 Heat of formation + Delta-G solvation = 85.899710 kcal Electronic energy + Delta-G solvation = -21858.834352 eV Core-core repulsion = 18813.066747 eV Total energy + Delta-G solvation = -3045.767605 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16458 -36.89452 -35.19052 -34.11899 -32.12443 -31.85516 -30.63243 -28.05593 -27.09526 -25.76442 -24.95103 -23.18928 -22.21484 -20.87219 -19.49989 -19.13736 -18.85959 -16.49961 -15.88455 -15.29607 -14.81770 -14.64227 -14.46214 -14.02106 -13.78961 -13.47114 -13.26792 -13.14754 -12.99572 -12.72002 -12.51152 -12.34562 -12.09420 -11.80075 -11.73993 -11.47045 -11.33971 -11.17066 -10.99277 -10.95459 -10.79239 -10.40137 -10.17376 -10.06266 -9.36699 -8.81207 -8.68399 -8.37968 -8.18001 -7.87227 -7.32528 -5.98978 -4.04059 2.05610 2.62269 2.99895 3.27227 3.36862 3.41297 4.42260 4.46287 4.76064 4.82626 4.97293 5.05500 5.11558 5.22703 5.29907 5.37180 5.49842 5.53958 5.57875 5.64955 5.71380 5.79677 5.84727 5.90450 5.95766 6.17293 6.21101 6.26136 6.40235 6.51070 6.57027 6.67267 6.92402 6.93381 6.97961 7.00891 7.24104 7.25644 7.60201 7.64040 7.92304 7.99994 8.14137 8.42144 8.56430 8.99531 9.60983 11.09008 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.004859 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.489636 B = 5761.334330 C = 6807.672099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.376 5.376 4 N -0.308 5.308 5 C 0.094 3.906 6 C -0.072 4.072 7 C -0.218 4.218 8 C 0.136 3.864 9 N -0.674 5.674 10 C 0.106 3.894 11 C 0.052 3.948 12 C -0.489 4.489 13 H 0.059 0.941 14 C 0.070 3.930 15 N -0.880 5.880 16 Si 0.884 3.116 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.284 1.284 20 C -0.200 4.200 21 C -0.164 4.164 22 C 0.086 3.914 23 C -0.094 4.094 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.345 0.655 35 H 0.033 0.967 36 H 0.036 0.964 37 H 0.258 0.742 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.908 -6.738 8.257 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 N -0.159 5.159 4 N -0.130 5.130 5 C -0.072 4.072 6 C -0.131 4.131 7 C -0.230 4.230 8 C 0.006 3.994 9 N -0.306 5.306 10 C -0.023 4.023 11 C 0.051 3.949 12 C -0.527 4.527 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.518 5.518 16 Si 0.712 3.288 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.237 4.237 21 C -0.202 4.202 22 C -0.041 4.041 23 C -0.152 4.152 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.163 0.837 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.010 -7.216 9.646 17.010 hybrid contribution 0.225 -0.600 -2.222 2.312 sum -11.785 -7.816 7.424 15.972 Atomic orbital electron populations 1.22191 0.94726 1.02689 1.03122 1.21541 0.94831 0.78557 1.04088 1.48353 1.52678 1.11513 1.03325 1.77225 1.24106 1.03971 1.07718 1.22133 0.97552 0.93899 0.93630 1.20175 1.01653 0.93547 0.97677 1.19714 1.12995 0.96654 0.93602 1.20103 0.89904 0.94332 0.95055 1.60472 1.12076 1.07101 1.50921 1.21428 0.96576 0.91097 0.93203 1.18727 0.88479 0.92860 0.94823 1.20510 1.41491 1.00262 0.90438 0.92269 1.24987 0.95189 0.95446 0.97636 1.70007 1.44023 1.31022 1.06702 0.86666 0.79664 0.82584 0.79860 1.19745 1.21238 1.21058 1.22858 1.02247 1.06832 0.91773 1.22534 1.03421 0.95857 0.98363 1.20832 1.00667 0.92061 0.90504 1.20476 1.02784 1.02620 0.89335 0.92100 0.90799 0.91749 0.89232 0.89031 0.91223 0.91451 0.89417 0.91381 0.95852 0.83650 0.94838 0.94507 0.93259 0.91654 0.91051 0.90468 0.92220 0.89887 0.91639 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.13 1.30 6.78 -4.04 -0.03 1.28 16 3 N -0.38 -5.34 3.61 -57.14 -0.21 -5.55 16 4 N -0.31 -5.04 12.58 33.67 0.42 -4.62 16 5 C 0.09 1.52 7.22 -82.40 -0.59 0.92 16 6 C -0.07 -0.96 10.12 36.01 0.36 -0.60 16 7 C -0.22 -3.54 5.61 -105.06 -0.59 -4.13 16 8 C 0.14 2.29 5.62 -4.98 -0.03 2.26 16 9 N -0.67 -13.36 6.46 -115.05 -0.74 -14.11 16 10 C 0.11 2.35 5.54 -3.82 -0.02 2.33 16 11 C 0.05 1.27 1.56 -155.66 -0.24 1.03 16 12 C -0.49 -13.06 8.32 -34.44 -0.29 -13.35 16 13 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 14 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 15 N -0.88 -24.52 12.95 55.43 0.72 -23.80 16 16 Si 0.88 20.81 29.55 -169.99 -5.02 15.79 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 C -0.20 -4.51 9.96 -26.69 -0.27 -4.78 16 21 C -0.16 -3.91 9.46 -26.69 -0.25 -4.16 16 22 C 0.09 1.27 6.93 -82.26 -0.57 0.70 16 23 C -0.09 -1.11 9.68 36.01 0.35 -0.77 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.73 7.67 -51.93 -0.40 0.33 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.09 1.22 7.92 -51.93 -0.41 0.81 16 32 H 0.07 1.10 7.92 -51.92 -0.41 0.69 16 33 H 0.02 0.39 7.14 -51.93 -0.37 0.02 16 34 H 0.34 7.29 8.29 -39.29 -0.33 6.97 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.61 7.74 -51.93 -0.40 0.21 16 44 H 0.09 1.03 7.14 -51.93 -0.37 0.66 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -30.05 364.63 -8.95 -38.99 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.73 Total: 6.30 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.88 Total: -18.50 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.19 Total: -48.07 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.05 -8.95 -38.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430046483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.891 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds