Wall clock time and date at job start Mon Mar 30 2020 02:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47381 * 2 1 4 4 N 1.40080 * 126.03498 * 89.97854 * 3 2 1 5 5 C 1.30841 * 108.20208 * 180.02562 * 4 3 2 6 6 C 1.50700 * 125.89763 * 180.02562 * 5 4 3 7 7 C 1.39867 * 108.20624 * 359.97438 * 5 4 3 8 8 C 1.50696 * 126.04483 * 179.97438 * 7 5 4 9 9 N 1.46902 * 109.47036 * 90.03050 * 8 7 5 10 10 C 1.46899 * 111.00001 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47145 * 174.70311 * 10 9 8 12 12 C 1.50697 * 115.55107 * 65.16316 * 11 10 9 13 13 H 1.08009 * 120.00231 * 264.96521 * 12 11 10 14 14 C 1.37877 * 119.99901 * 84.96668 * 12 11 10 15 15 N 1.31518 * 119.99893 * 353.06607 * 14 12 11 16 16 Si 1.86799 * 119.99865 * 173.06417 * 14 12 11 17 17 H 1.48495 * 109.47511 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47127 * 120.00385 * 16 14 12 19 19 H 1.48506 * 109.46995 * 239.99848 * 16 14 12 20 20 C 1.53003 * 117.49613 * 279.49978 * 11 10 9 21 21 C 1.52999 * 117.49838 * 210.83704 * 11 10 9 22 22 C 1.34948 * 126.03737 * 270.26486 * 3 2 1 23 23 C 1.50703 * 126.12725 * 359.97438 * 22 3 2 24 24 H 1.09003 * 109.47259 * 59.99469 * 1 2 3 25 25 H 1.09003 * 109.47289 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46969 * 300.00073 * 1 2 3 27 27 H 1.09003 * 109.46516 * 240.00087 * 2 1 3 28 28 H 1.09003 * 109.47259 * 120.00531 * 2 1 3 29 29 H 1.08999 * 109.47037 * 269.97393 * 6 5 4 30 30 H 1.09008 * 109.47038 * 29.97296 * 6 5 4 31 31 H 1.09003 * 109.47098 * 149.96957 * 6 5 4 32 32 H 1.09008 * 109.46868 * 330.03501 * 8 7 5 33 33 H 1.09002 * 109.47575 * 210.03218 * 8 7 5 34 34 H 1.00895 * 111.00096 * 56.04668 * 9 8 7 35 35 H 1.09004 * 109.46918 * 294.69866 * 10 9 8 36 36 H 1.08995 * 109.47500 * 54.70312 * 10 9 8 37 37 H 0.96999 * 119.99482 * 185.03379 * 15 14 12 38 38 H 1.08997 * 117.49718 * 359.97438 * 20 11 10 39 39 H 1.08997 * 117.49934 * 145.02356 * 20 11 10 40 40 H 1.09001 * 117.49700 * 214.97603 * 21 11 10 41 41 H 1.09001 * 117.49918 * 359.97438 * 21 11 10 42 42 H 1.08993 * 109.47650 * 270.18206 * 23 22 3 43 43 H 1.09004 * 109.47220 * 30.18712 * 23 22 3 44 44 H 1.09005 * 109.46957 * 150.17760 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2927 2.1583 1.1328 5 6 2.7075 3.3327 0.7321 6 6 3.1126 4.4782 1.6236 7 6 2.7113 3.3410 -0.6666 8 6 3.1188 4.4954 -1.5453 9 7 4.5572 4.4096 -1.8307 10 6 4.9914 5.5218 -2.6865 11 6 6.5116 5.4739 -2.8531 12 6 7.0471 4.2731 -3.5896 13 1 7.3893 3.4097 -3.0382 14 6 7.1004 4.2767 -4.9673 15 7 6.5604 5.2670 -5.6437 16 14 7.9396 2.8751 -5.8732 17 1 8.4632 1.8933 -4.8899 18 1 6.9602 2.2068 -6.7673 19 1 9.0632 3.4114 -6.6828 20 6 7.3649 6.0455 -1.7190 21 6 7.2437 6.8038 -3.0433 22 6 2.2783 2.1314 -1.0912 23 6 2.1187 1.6982 -2.5258 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2414 5.0970 1.8385 30 1 3.5191 4.0866 2.5562 31 1 3.8703 5.0794 1.1210 32 1 2.9051 5.4342 -1.0342 33 1 2.5598 4.4554 -2.4803 34 1 4.7910 3.5205 -2.2464 35 1 4.5159 5.4355 -3.6636 36 1 4.7061 6.4676 -2.2259 37 1 6.5331 5.2343 -6.6127 38 1 6.8432 6.4561 -0.8546 39 1 8.3138 5.5534 -1.5060 40 1 8.1130 6.8101 -3.7009 41 1 6.6424 7.7129 -3.0502 42 1 3.0480 1.2486 -2.8752 43 1 1.3124 0.9681 -2.5974 44 1 1.8798 2.5647 -3.1425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430046483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:15 Heat of formation + Delta-G solvation = 68.661318 kcal Electronic energy + Delta-G solvation = -21859.581865 eV Core-core repulsion = 18813.066747 eV Total energy + Delta-G solvation = -3046.515118 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.28425 -38.69956 -36.40440 -35.39995 -33.92619 -33.16635 -31.71415 -29.27337 -28.11623 -27.59423 -26.49919 -24.44433 -23.37222 -22.74027 -21.02989 -20.44828 -20.17994 -17.91456 -17.49358 -16.59648 -16.41654 -16.14557 -15.77822 -15.39383 -15.16646 -14.91447 -14.48617 -14.19821 -14.11995 -13.94072 -13.79931 -13.36483 -13.25563 -13.03581 -12.94569 -12.88289 -12.85573 -12.66173 -12.62642 -12.34813 -12.26135 -12.11158 -11.93985 -11.41734 -11.21455 -10.66362 -10.35801 -9.92324 -9.90637 -9.24034 -8.91599 -8.04323 -6.14558 0.93378 1.39946 1.44983 1.54596 1.65037 1.79224 2.45684 3.23558 3.47810 3.59834 3.75620 3.94271 4.07365 4.10609 4.18569 4.26855 4.35238 4.44414 4.52386 4.61446 4.67615 4.72549 4.77039 4.79394 4.80319 4.86273 4.89326 5.00985 5.06921 5.10972 5.13641 5.15141 5.19145 5.29289 5.34451 5.35025 5.71729 5.74987 5.83795 5.85722 6.22782 6.48461 6.56284 6.73935 6.85530 6.94548 7.52872 9.03211 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.004859 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.489636 B = 5761.334330 C = 6807.672099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 N -0.374 5.374 4 N -0.334 5.334 5 C 0.081 3.919 6 C -0.068 4.068 7 C -0.247 4.247 8 C 0.145 3.855 9 N -0.672 5.672 10 C 0.121 3.879 11 C 0.029 3.971 12 C -0.499 4.499 13 H 0.047 0.953 14 C 0.029 3.971 15 N -0.906 5.906 16 Si 0.943 3.057 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.286 1.286 20 C -0.180 4.180 21 C -0.168 4.168 22 C 0.088 3.912 23 C -0.092 4.092 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.047 0.953 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.336 0.664 35 H 0.005 0.995 36 H 0.047 0.953 37 H 0.258 0.742 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.741 -8.003 8.566 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.001 4.001 3 N -0.157 5.157 4 N -0.157 5.157 5 C -0.085 4.085 6 C -0.127 4.127 7 C -0.258 4.258 8 C 0.015 3.985 9 N -0.302 5.302 10 C -0.008 4.008 11 C 0.028 3.972 12 C -0.537 4.537 13 H 0.066 0.934 14 C -0.171 4.171 15 N -0.545 5.545 16 Si 0.770 3.230 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.213 1.213 20 C -0.217 4.217 21 C -0.206 4.206 22 C -0.040 4.040 23 C -0.150 4.150 24 H 0.077 0.923 25 H 0.121 0.879 26 H 0.066 0.934 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.153 0.847 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.854 -8.496 9.980 18.358 hybrid contribution 0.459 -0.262 -2.282 2.342 sum -12.396 -8.757 7.698 17.018 Atomic orbital electron populations 1.22131 0.93246 1.04281 1.02179 1.21963 0.96045 0.76646 1.05429 1.48730 1.51762 1.12544 1.02618 1.77162 1.25055 1.04407 1.09045 1.22520 0.97493 0.94480 0.94021 1.20200 1.02155 0.92988 0.97349 1.19745 1.15009 0.97307 0.93754 1.20028 0.87933 0.95221 0.95293 1.60473 1.14306 1.05796 1.49624 1.21157 0.94893 0.92436 0.92310 1.18891 0.89951 0.92381 0.95954 1.20671 1.41475 1.00677 0.90895 0.93432 1.25586 0.95646 0.97582 0.98303 1.70102 1.45042 1.32502 1.06821 0.85745 0.78613 0.80053 0.78638 1.19558 1.20458 1.21251 1.22832 1.01736 1.05449 0.91708 1.22455 1.02817 0.96347 0.98980 1.21228 0.99284 0.91766 0.91743 1.20541 1.03794 1.03228 0.87416 0.92250 0.87919 0.93405 0.87040 0.88590 0.89453 0.90891 0.90219 0.90779 0.95742 0.84708 0.97656 0.93416 0.93285 0.89568 0.91379 0.92729 0.90991 0.90024 0.88688 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 10.24 71.98 0.74 -1.52 16 2 C 0.12 2.10 6.78 86.38 0.59 2.68 16 3 N -0.37 -10.11 3.61 -334.69 -1.21 -11.32 16 4 N -0.33 -10.68 12.58 -47.38 -0.60 -11.27 16 5 C 0.08 2.54 7.22 43.10 0.31 2.86 16 6 C -0.07 -1.77 10.12 71.24 0.72 -1.05 16 7 C -0.25 -7.85 5.61 -20.15 -0.11 -7.96 16 8 C 0.14 4.80 5.62 85.56 0.48 5.28 16 9 N -0.67 -26.44 6.46 -517.92 -3.34 -29.78 16 10 C 0.12 5.37 5.54 86.30 0.48 5.85 16 11 C 0.03 1.41 1.56 -52.93 -0.08 1.33 16 12 C -0.50 -26.78 8.32 25.60 0.21 -26.57 16 13 H 0.05 2.61 7.82 -2.91 -0.02 2.58 16 14 C 0.03 1.55 5.39 84.65 0.46 2.01 16 15 N -0.91 -50.82 12.95 21.45 0.28 -50.55 16 16 Si 0.94 42.75 29.55 68.60 2.03 44.78 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 C -0.18 -7.96 9.96 30.62 0.30 -7.66 16 21 C -0.17 -7.99 9.46 30.62 0.29 -7.71 16 22 C 0.09 2.49 6.93 41.41 0.29 2.78 16 23 C -0.09 -2.02 9.68 71.24 0.69 -1.33 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.11 1.48 7.67 -2.39 -0.02 1.46 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.08 2.17 7.92 -2.39 -0.02 2.15 16 32 H 0.07 2.34 7.92 -2.38 -0.02 2.32 16 33 H 0.02 0.81 7.14 -2.39 -0.02 0.79 16 34 H 0.34 14.23 8.29 -89.70 -0.74 13.49 16 35 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 37 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.05 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.09 1.49 7.74 -2.38 -0.02 1.48 16 44 H 0.08 1.88 7.14 -2.38 -0.02 1.86 16 Total: -1.00 -63.74 364.63 2.74 -61.01 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.22 Total: 28.13 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 5.36 Total: -30.99 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.87 Total: -102.92 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -63.74 2.74 -61.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430046483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.668 kcal (2) G-P(sol) polarization free energy of solvation -63.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds