Wall clock time and date at job start Mon Mar 30 2020 01:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46760 * 2 1 4 4 C 1.53003 * 109.46998 * 240.00224 * 2 1 3 5 5 N 1.46494 * 109.47539 * 120.00209 * 2 1 3 6 6 C 1.34955 * 126.03815 * 75.25852 * 5 2 1 7 7 C 1.35311 * 107.74423 * 180.14989 * 6 5 2 8 8 C 1.50701 * 126.03542 * 179.87246 * 7 6 5 9 9 N 1.46900 * 109.47398 * 273.53643 * 8 7 6 10 10 C 1.46900 * 110.99904 * 185.85454 * 9 8 7 11 11 C 1.53007 * 109.46974 * 178.46439 * 10 9 8 12 12 C 1.50696 * 115.55017 * 65.16798 * 11 10 9 13 13 H 1.08005 * 119.99988 * 268.28441 * 12 11 10 14 14 C 1.37871 * 119.99958 * 88.28665 * 12 11 10 15 15 N 1.31511 * 120.00250 * 175.16039 * 14 12 11 16 16 Si 1.86801 * 120.00066 * 355.15530 * 14 12 11 17 17 H 1.48501 * 109.46913 * 90.22119 * 16 14 12 18 18 H 1.48501 * 109.47312 * 210.21926 * 16 14 12 19 19 H 1.48501 * 109.47195 * 330.22384 * 16 14 12 20 20 C 1.53007 * 117.49531 * 279.49818 * 11 10 9 21 21 C 1.52998 * 117.49628 * 210.84216 * 11 10 9 22 22 C 1.39867 * 107.92535 * 359.61299 * 7 6 5 23 23 N 1.30843 * 108.19870 * 0.24050 * 22 7 6 24 24 H 1.08999 * 109.46665 * 299.99281 * 1 2 3 25 25 H 1.09001 * 109.47096 * 59.99954 * 1 2 3 26 26 H 1.08999 * 109.46699 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46941 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47183 * 300.00208 * 3 2 1 29 29 H 1.09005 * 109.47036 * 60.00444 * 3 2 1 30 30 H 1.08990 * 109.47369 * 300.00032 * 4 2 1 31 31 H 1.09007 * 109.46921 * 59.99833 * 4 2 1 32 32 H 1.08996 * 109.46818 * 179.97438 * 4 2 1 33 33 H 1.08003 * 126.12337 * 0.02562 * 6 5 2 34 34 H 1.09002 * 109.47075 * 153.54047 * 8 7 6 35 35 H 1.08999 * 109.47366 * 33.54019 * 8 7 6 36 36 H 1.00898 * 111.00044 * 61.90345 * 9 8 7 37 37 H 1.09002 * 109.46914 * 58.46767 * 10 9 8 38 38 H 1.08994 * 109.47563 * 298.46241 * 10 9 8 39 39 H 0.97008 * 120.00521 * 180.02562 * 15 14 12 40 40 H 1.08995 * 117.49953 * 0.02562 * 20 11 10 41 41 H 1.09001 * 117.49279 * 145.02248 * 20 11 10 42 42 H 1.09004 * 117.49756 * 214.97280 * 21 11 10 43 43 H 1.08995 * 117.50087 * 359.97224 * 21 11 10 44 44 H 1.07997 * 125.90013 * 180.22126 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0185 -0.6906 1.1961 6 6 2.0214 -2.0251 1.3968 7 6 2.5485 -2.2569 2.6212 8 6 2.7423 -3.6070 3.2620 9 7 1.5106 -3.9991 3.9601 10 6 1.7061 -5.2453 4.7128 11 6 0.4163 -5.6003 5.4554 12 6 -0.7657 -5.9339 4.5822 13 1 -1.4556 -5.1570 4.2872 14 6 -0.9664 -7.2309 4.1599 15 7 -2.0475 -7.5406 3.4781 16 14 0.2973 -8.5483 4.5560 17 1 -0.0426 -9.1862 5.8532 18 1 0.2943 -9.5755 3.4836 19 1 1.6447 -7.9307 4.6462 20 6 0.1383 -4.8759 6.7742 21 6 0.5487 -6.3506 6.7822 22 6 2.8873 -1.0224 3.1847 23 7 2.5700 -0.0827 2.3312 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8901 30 1 1.6767 -1.7488 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1300 -0.7208 -1.2495 33 1 1.6648 -2.7738 0.7049 34 1 3.5640 -3.5556 3.9763 35 1 2.9746 -4.3441 2.4933 36 1 0.7402 -4.0840 3.3141 37 1 2.5145 -5.1125 5.4318 38 1 1.9615 -6.0500 4.0234 39 1 -2.1890 -8.4533 3.1813 40 1 0.8740 -4.1464 7.1125 41 1 -0.8996 -4.6412 7.0103 42 1 -0.2194 -7.0853 7.0237 43 1 1.5546 -6.5918 7.1258 44 1 3.3334 -0.8709 4.1565 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430072376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:38 Heat of formation + Delta-G solvation = 78.358622 kcal Electronic energy + Delta-G solvation = -21598.233381 eV Core-core repulsion = 18552.138770 eV Total energy + Delta-G solvation = -3046.094611 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.20473 -38.99760 -37.78761 -35.86017 -34.17522 -31.54330 -31.35213 -28.48271 -28.37226 -27.98328 -26.74258 -24.45567 -23.28389 -23.05296 -21.05169 -20.71630 -20.17551 -18.18905 -17.67952 -16.84185 -16.34478 -16.20921 -15.54269 -15.52613 -15.33072 -15.06202 -14.72545 -14.52463 -14.36625 -13.99342 -13.66933 -13.25383 -13.22216 -13.14382 -13.12686 -13.00767 -12.75573 -12.60247 -12.32560 -12.17816 -12.09704 -12.03226 -11.82243 -11.47916 -11.34354 -10.79297 -10.59368 -10.26207 -10.21976 -9.33586 -8.97427 -8.25134 -6.30380 1.02007 1.38186 1.40700 1.53157 1.62156 1.90539 2.40865 3.10440 3.22087 3.46350 3.77666 3.84862 3.89458 3.95646 4.10864 4.19282 4.36308 4.47091 4.51247 4.57915 4.58431 4.62072 4.69803 4.77022 4.78063 4.83206 4.83901 4.90461 4.93057 4.94008 4.98825 5.06442 5.19171 5.21817 5.26523 5.32285 5.46349 5.56834 5.79994 5.81437 6.23440 6.36183 6.46794 6.64325 6.80461 6.84819 7.39121 8.90453 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.004040 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.504169 B = 6929.834291 C = 7448.504942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 C -0.136 4.136 4 C -0.155 4.155 5 N -0.364 5.364 6 C 0.057 3.943 7 C -0.237 4.237 8 C 0.140 3.860 9 N -0.679 5.679 10 C 0.105 3.895 11 C -0.017 4.017 12 C -0.478 4.478 13 H 0.030 0.970 14 C 0.022 3.978 15 N -0.951 5.951 16 Si 0.937 3.063 17 H -0.273 1.273 18 H -0.301 1.301 19 H -0.232 1.232 20 C -0.157 4.157 21 C -0.199 4.199 22 C 0.052 3.948 23 N -0.323 5.323 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.180 0.820 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.336 0.664 37 H 0.070 0.930 38 H 0.013 0.987 39 H 0.263 0.737 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.983 13.464 -7.975 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.088 3.912 3 C -0.194 4.194 4 C -0.213 4.213 5 N -0.147 5.147 6 C -0.091 4.091 7 C -0.249 4.249 8 C 0.010 3.990 9 N -0.310 5.310 10 C -0.024 4.024 11 C -0.018 4.018 12 C -0.516 4.516 13 H 0.048 0.952 14 C -0.175 4.175 15 N -0.591 5.591 16 Si 0.762 3.238 17 H -0.199 1.199 18 H -0.228 1.228 19 H -0.155 1.155 20 C -0.194 4.194 21 C -0.237 4.237 22 C -0.133 4.133 23 N -0.144 5.144 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.197 0.803 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.154 0.846 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 11.959 15.090 -7.882 20.805 hybrid contribution -0.285 -2.498 -0.339 2.537 sum 11.673 12.591 -8.221 19.037 Atomic orbital electron populations 1.22267 0.92649 1.02953 1.03681 1.21048 0.94689 0.94170 0.81274 1.21866 1.01411 0.92605 1.03473 1.22237 1.01850 1.01269 0.95925 1.49079 1.47277 1.04086 1.14238 1.22484 1.00811 0.87054 0.98755 1.20048 1.12751 0.96175 0.95926 1.20111 0.92631 0.90666 0.95592 1.60444 1.06346 1.33062 1.31143 1.21522 0.95518 0.89437 0.95935 1.19310 0.94599 1.01065 0.86824 1.20422 1.07947 0.93553 1.29671 0.95182 1.25773 0.96634 1.00718 0.94391 1.70060 1.28440 1.20076 1.40548 0.85930 0.82140 0.78473 0.77252 1.19867 1.22792 1.15489 1.22673 1.00441 0.93474 1.02810 1.23022 1.01387 0.95287 1.03970 1.24011 0.99641 0.90072 0.99593 1.77193 1.19055 1.22852 0.95340 0.93436 0.87698 0.92512 0.92571 0.88271 0.92769 0.91624 0.87619 0.92084 0.80340 0.89788 0.95327 0.84597 0.91195 0.96880 0.92784 0.88259 0.91488 0.91318 0.88084 0.78921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 8.73 71.98 0.63 -2.21 16 2 C 0.17 3.20 1.24 3.61 0.00 3.20 16 3 C -0.14 -2.28 8.09 71.98 0.58 -1.70 16 4 C -0.15 -2.16 8.29 71.98 0.60 -1.57 16 5 N -0.36 -9.42 3.43 -307.83 -1.06 -10.48 16 6 C 0.06 1.53 10.51 83.54 0.88 2.40 16 7 C -0.24 -6.87 5.66 -20.15 -0.11 -6.99 16 8 C 0.14 4.16 6.17 85.56 0.53 4.68 16 9 N -0.68 -25.10 6.45 -517.92 -3.34 -28.44 16 10 C 0.11 4.11 5.18 86.31 0.45 4.56 16 11 C -0.02 -0.76 1.03 -52.93 -0.05 -0.81 16 12 C -0.48 -26.68 8.83 25.60 0.23 -26.45 16 13 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 14 C 0.02 1.25 5.47 84.65 0.46 1.71 16 15 N -0.95 -58.87 13.96 21.44 0.30 -58.57 16 16 Si 0.94 43.93 24.95 68.60 1.71 45.64 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 19 H -0.23 -9.83 5.69 99.48 0.57 -9.26 16 20 C -0.16 -6.37 9.96 30.62 0.30 -6.06 16 21 C -0.20 -8.11 7.67 30.62 0.23 -7.87 16 22 C 0.05 1.49 11.96 85.23 1.02 2.51 16 23 N -0.32 -9.52 11.66 -57.02 -0.66 -10.18 16 24 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.10 8.04 -2.38 -0.02 1.08 16 30 H 0.06 0.95 7.36 -2.39 -0.02 0.93 16 31 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.18 4.17 7.55 -2.91 -0.02 4.15 16 34 H 0.08 2.25 8.12 -2.39 -0.02 2.23 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.34 14.02 8.25 -89.70 -0.74 13.28 16 37 H 0.07 2.40 8.08 -2.39 -0.02 2.38 16 38 H 0.01 0.54 6.50 -2.39 -0.02 0.52 16 39 H 0.26 15.38 8.31 -92.70 -0.77 14.60 16 40 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.07 3.02 7.34 -2.39 -0.02 3.00 16 43 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 44 H 0.19 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -67.53 354.37 2.77 -64.76 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.08 Total: 31.88 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 5.74 Total: -34.60 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.76 Total: -107.67 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.71 Total: 45.64 kcal Total: -67.53 2.77 -64.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430072376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.117 kcal (2) G-P(sol) polarization free energy of solvation -67.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds