Wall clock time and date at job start Mon Mar 30 2020 01:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47110 * 2 1 4 4 N 1.46493 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99922 * 264.52017 * 4 3 2 6 6 H 1.08003 * 120.00152 * 141.51124 * 5 4 3 7 7 C 1.38812 * 120.00343 * 321.50475 * 5 4 3 8 8 N 1.31617 * 119.99730 * 340.05535 * 7 5 4 9 9 Si 1.86799 * 120.00250 * 160.04794 * 7 5 4 10 10 H 1.48497 * 109.46879 * 90.00588 * 9 7 5 11 11 H 1.48500 * 109.47274 * 210.00897 * 9 7 5 12 12 H 1.48503 * 109.46890 * 330.00331 * 9 7 5 13 13 C 1.46506 * 120.00418 * 84.52333 * 4 3 2 14 14 C 1.50695 * 109.47303 * 89.99469 * 13 4 3 15 15 C 1.35319 * 126.12467 * 95.02838 * 14 13 4 16 16 C 1.39866 * 107.91992 * 179.97438 * 15 14 13 17 17 N 1.30831 * 108.20724 * 359.97438 * 16 15 14 18 18 N 1.34946 * 126.13262 * 274.72264 * 14 13 4 19 19 C 1.46505 * 126.03204 * 0.03030 * 18 14 13 20 20 C 1.54273 * 110.02970 * 237.91027 * 19 18 14 21 21 C 1.54963 * 104.15588 * 217.13713 * 20 19 18 22 22 C 1.54890 * 102.77903 * 37.89143 * 21 20 19 23 23 C 1.53873 * 110.03055 * 120.69536 * 19 18 14 24 24 H 1.09007 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47090 * 299.99880 * 1 2 3 26 26 H 1.08997 * 109.47046 * 59.99907 * 1 2 3 27 27 H 1.09001 * 109.47090 * 240.00119 * 2 1 3 28 28 H 1.08997 * 109.47046 * 120.00093 * 2 1 3 29 29 H 1.09001 * 109.47046 * 60.00093 * 3 2 1 30 30 H 1.09006 * 109.47030 * 300.00140 * 3 2 1 31 31 H 0.97000 * 119.99820 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.46629 * 329.99890 * 13 4 3 33 33 H 1.08995 * 109.47260 * 210.00157 * 13 4 3 34 34 H 1.07998 * 126.03765 * 359.97438 * 15 14 13 35 35 H 1.08005 * 125.90118 * 180.02562 * 16 15 14 36 36 H 1.08993 * 110.01966 * 359.29864 * 19 18 14 37 37 H 1.08995 * 110.48619 * 335.78963 * 20 19 18 38 38 H 1.09004 * 110.48422 * 98.42947 * 20 19 18 39 39 H 1.08995 * 110.72170 * 279.57118 * 21 20 19 40 40 H 1.09004 * 110.75924 * 156.22808 * 21 20 19 41 41 H 1.08999 * 110.48389 * 203.40317 * 22 21 20 42 42 H 1.09003 * 110.59955 * 80.81666 * 22 21 20 43 43 H 1.09000 * 110.03162 * 238.56356 * 23 19 18 44 44 H 1.08998 * 110.03325 * 359.95434 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5555 1.1796 6 1 5.0942 0.9858 1.3359 7 6 3.7228 2.4025 2.1751 8 7 2.8834 3.3708 1.8748 9 14 4.2850 2.1680 3.9410 10 1 5.5120 2.9695 4.1803 11 1 3.2128 2.6162 4.8656 12 1 4.5771 0.7319 4.1809 13 6 4.2370 1.3216 -1.2639 14 6 4.4879 2.6944 -1.8325 15 6 5.6090 3.4339 -1.6668 16 6 5.4353 4.6389 -2.3552 17 7 4.2527 4.6234 -2.9146 18 7 3.6372 3.4042 -2.6029 19 6 2.3042 2.9763 -3.0348 20 6 2.2214 2.9798 -4.5753 21 6 0.7823 3.4693 -4.8764 22 6 0.5523 4.5470 -3.7880 23 6 1.2432 3.9720 -2.5343 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 2.5566 3.9625 2.5705 32 1 3.6476 0.7376 -1.9709 33 1 5.1895 0.8225 -1.0855 34 1 6.4833 3.1447 -1.1026 35 1 6.1537 5.4432 -2.4154 36 1 2.0902 1.9786 -2.6516 37 1 2.9543 3.6687 -4.9951 38 1 2.3732 1.9742 -4.9677 39 1 0.0673 2.6536 -4.7696 40 1 0.7238 3.9077 -5.8727 41 1 -0.5137 4.6847 -3.6067 42 1 1.0138 5.4906 -4.0790 43 1 0.5138 3.4574 -1.9089 44 1 1.7200 4.7731 -1.9694 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449013839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:33 Heat of formation + Delta-G solvation = 78.983554 kcal Electronic energy + Delta-G solvation = -23111.450523 eV Core-core repulsion = 20065.383011 eV Total energy + Delta-G solvation = -3046.067512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47761 -37.51923 -36.16123 -32.60066 -31.99120 -31.21344 -29.25016 -28.55470 -26.88172 -25.68175 -25.49298 -22.09651 -21.43765 -20.71531 -20.28311 -19.46071 -18.37674 -16.83949 -16.23415 -15.40199 -15.05972 -14.41157 -14.26859 -14.05565 -13.67144 -13.26947 -13.20255 -13.03410 -12.92532 -12.61647 -12.26758 -11.51888 -11.38416 -11.28730 -11.17427 -11.00763 -10.99700 -10.92820 -10.86178 -10.77377 -10.64371 -10.39423 -10.38094 -10.05382 -9.96808 -9.70599 -9.52004 -8.51777 -8.38594 -7.56866 -6.64257 -5.83734 -3.41369 2.77576 3.27922 3.34311 3.41870 3.44114 3.75286 4.46187 4.68622 4.76113 5.00966 5.28903 5.34672 5.46157 5.46786 5.63772 5.68016 5.71840 5.74906 5.76948 5.84665 5.88459 5.92111 5.96874 6.03976 6.14229 6.18462 6.28331 6.42068 6.45952 6.50330 6.51649 6.56996 6.65519 6.67477 6.78997 6.81286 7.15798 7.18696 7.54714 7.64649 7.78208 7.97080 8.47032 8.61102 9.13117 9.72734 10.31393 11.17745 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.007167 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.779559 B = 3906.056009 C = 4778.494615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.145 3.855 4 N -0.568 5.568 5 C -0.263 4.263 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.277 1.277 13 C 0.195 3.805 14 C 0.101 3.899 15 C -0.276 4.276 16 C 0.036 3.964 17 N -0.318 5.318 18 N -0.358 5.358 19 C 0.164 3.836 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.127 4.127 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.025 0.975 31 H 0.254 0.746 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.167 0.833 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 -2.307 -10.150 11.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 C 0.020 3.980 4 N -0.287 5.287 5 C -0.393 4.393 6 H 0.080 0.920 7 C -0.182 4.182 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.066 3.934 14 C -0.029 4.029 15 C -0.306 4.306 16 C -0.149 4.149 17 N -0.140 5.140 18 N -0.141 5.141 19 C 0.061 3.939 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.165 4.165 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.151 0.849 35 H 0.184 0.816 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.656 -1.586 -10.778 11.848 hybrid contribution 0.924 -0.210 1.688 1.936 sum -3.732 -1.796 -9.090 9.990 Atomic orbital electron populations 1.21699 0.97409 1.00085 1.01118 1.22133 0.93790 1.01573 1.00810 1.21056 0.83258 0.92026 1.01709 1.43959 1.00866 1.83601 1.00291 1.19009 1.09723 1.19692 0.90903 0.91966 1.25248 0.99249 0.94317 0.99387 1.70026 1.34381 1.15557 1.31995 0.86413 0.78001 0.78089 0.84929 1.21170 1.21575 1.20216 1.19818 0.97432 0.87628 0.88519 1.22658 0.89629 0.98843 0.91773 1.21014 1.01259 0.96673 1.11680 1.23552 0.94888 0.98271 0.98183 1.77040 1.08900 1.02088 1.25923 1.48454 1.13337 1.12545 1.39774 1.21854 0.79129 0.98635 0.94282 1.22765 0.97994 1.01711 0.94576 1.22460 0.96051 0.98544 0.98802 1.22319 0.99954 0.98580 0.94895 1.22436 0.97125 0.99210 0.97707 0.93990 0.93054 0.93674 0.94078 0.92255 0.89023 0.95707 0.93607 0.93843 0.91114 0.84898 0.81559 0.88076 0.90157 0.91483 0.91402 0.91512 0.91771 0.91495 0.90913 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.90 16 2 C -0.14 -2.66 6.25 -26.73 -0.17 -2.83 16 3 C 0.15 3.19 5.22 -4.05 -0.02 3.17 16 4 N -0.57 -13.33 2.40 -174.61 -0.42 -13.75 16 5 C -0.26 -6.89 9.46 -15.06 -0.14 -7.03 16 6 H 0.06 1.62 7.91 -52.48 -0.41 1.21 16 7 C 0.02 0.53 4.93 -17.43 -0.09 0.44 16 8 N -0.88 -24.83 11.53 55.49 0.64 -24.19 16 9 Si 0.90 21.20 29.60 -169.99 -5.03 16.17 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.19 4.00 5.66 -5.19 -0.03 3.97 16 14 C 0.10 2.15 6.51 -82.27 -0.54 1.62 16 15 C -0.28 -5.80 10.72 -40.01 -0.43 -6.23 16 16 C 0.04 0.72 12.02 -17.37 -0.21 0.51 16 17 N -0.32 -6.55 12.03 30.62 0.37 -6.18 16 18 N -0.36 -7.16 3.20 -49.61 -0.16 -7.32 16 19 C 0.16 2.76 3.00 -66.81 -0.20 2.56 16 20 C -0.13 -1.84 6.52 -25.03 -0.16 -2.01 16 21 C -0.12 -1.41 6.91 -24.70 -0.17 -1.58 16 22 C -0.12 -1.59 6.83 -25.07 -0.17 -1.76 16 23 C -0.13 -2.11 6.11 -25.61 -0.16 -2.27 16 24 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.09 2.35 5.61 -51.93 -0.29 2.06 16 30 H 0.02 0.52 4.23 -51.93 -0.22 0.30 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.04 0.80 7.25 -51.92 -0.38 0.42 16 33 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 34 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 35 H 0.17 2.67 8.06 -52.48 -0.42 2.25 16 36 H 0.10 1.72 5.15 -51.93 -0.27 1.45 16 37 H 0.08 1.24 7.72 -51.93 -0.40 0.84 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.19 7.51 -51.93 -0.39 0.81 16 44 H 0.08 1.61 7.83 -51.93 -0.41 1.21 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -29.36 347.24 -8.88 -38.24 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.39 Total: 5.14 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.11 Total: -13.34 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.43 Total: -51.44 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.36 -8.88 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449013839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.221 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds