Wall clock time and date at job start Mon Mar 30 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47110 * 2 1 4 4 N 1.46493 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99922 * 264.52017 * 4 3 2 6 6 H 1.08003 * 120.00152 * 141.51124 * 5 4 3 7 7 C 1.38812 * 120.00343 * 321.50475 * 5 4 3 8 8 N 1.31617 * 119.99730 * 340.05535 * 7 5 4 9 9 Si 1.86799 * 120.00250 * 160.04794 * 7 5 4 10 10 H 1.48497 * 109.46879 * 90.00588 * 9 7 5 11 11 H 1.48500 * 109.47274 * 210.00897 * 9 7 5 12 12 H 1.48503 * 109.46890 * 330.00331 * 9 7 5 13 13 C 1.46506 * 120.00418 * 84.52333 * 4 3 2 14 14 C 1.50695 * 109.47303 * 89.99469 * 13 4 3 15 15 C 1.35319 * 126.12467 * 95.02838 * 14 13 4 16 16 C 1.39866 * 107.91992 * 179.97438 * 15 14 13 17 17 N 1.30831 * 108.20724 * 359.97438 * 16 15 14 18 18 N 1.34946 * 126.13262 * 274.72264 * 14 13 4 19 19 C 1.46505 * 126.03204 * 0.03030 * 18 14 13 20 20 C 1.54273 * 110.02970 * 237.91027 * 19 18 14 21 21 C 1.54963 * 104.15588 * 217.13713 * 20 19 18 22 22 C 1.54890 * 102.77903 * 37.89143 * 21 20 19 23 23 C 1.53873 * 110.03055 * 120.69536 * 19 18 14 24 24 H 1.09007 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47090 * 299.99880 * 1 2 3 26 26 H 1.08997 * 109.47046 * 59.99907 * 1 2 3 27 27 H 1.09001 * 109.47090 * 240.00119 * 2 1 3 28 28 H 1.08997 * 109.47046 * 120.00093 * 2 1 3 29 29 H 1.09001 * 109.47046 * 60.00093 * 3 2 1 30 30 H 1.09006 * 109.47030 * 300.00140 * 3 2 1 31 31 H 0.97000 * 119.99820 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.46629 * 329.99890 * 13 4 3 33 33 H 1.08995 * 109.47260 * 210.00157 * 13 4 3 34 34 H 1.07998 * 126.03765 * 359.97438 * 15 14 13 35 35 H 1.08005 * 125.90118 * 180.02562 * 16 15 14 36 36 H 1.08993 * 110.01966 * 359.29864 * 19 18 14 37 37 H 1.08995 * 110.48619 * 335.78963 * 20 19 18 38 38 H 1.09004 * 110.48422 * 98.42947 * 20 19 18 39 39 H 1.08995 * 110.72170 * 279.57118 * 21 20 19 40 40 H 1.09004 * 110.75924 * 156.22808 * 21 20 19 41 41 H 1.08999 * 110.48389 * 203.40317 * 22 21 20 42 42 H 1.09003 * 110.59955 * 80.81666 * 22 21 20 43 43 H 1.09000 * 110.03162 * 238.56356 * 23 19 18 44 44 H 1.08998 * 110.03325 * 359.95434 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5555 1.1796 6 1 5.0942 0.9858 1.3359 7 6 3.7228 2.4025 2.1751 8 7 2.8834 3.3708 1.8748 9 14 4.2850 2.1680 3.9410 10 1 5.5120 2.9695 4.1803 11 1 3.2128 2.6162 4.8656 12 1 4.5771 0.7319 4.1809 13 6 4.2370 1.3216 -1.2639 14 6 4.4879 2.6944 -1.8325 15 6 5.6090 3.4339 -1.6668 16 6 5.4353 4.6389 -2.3552 17 7 4.2527 4.6234 -2.9146 18 7 3.6372 3.4042 -2.6029 19 6 2.3042 2.9763 -3.0348 20 6 2.2214 2.9798 -4.5753 21 6 0.7823 3.4693 -4.8764 22 6 0.5523 4.5470 -3.7880 23 6 1.2432 3.9720 -2.5343 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 2.5566 3.9625 2.5705 32 1 3.6476 0.7376 -1.9709 33 1 5.1895 0.8225 -1.0855 34 1 6.4833 3.1447 -1.1026 35 1 6.1537 5.4432 -2.4154 36 1 2.0902 1.9786 -2.6516 37 1 2.9543 3.6687 -4.9951 38 1 2.3732 1.9742 -4.9677 39 1 0.0673 2.6536 -4.7696 40 1 0.7238 3.9077 -5.8727 41 1 -0.5137 4.6847 -3.6067 42 1 1.0138 5.4906 -4.0790 43 1 0.5138 3.4574 -1.9089 44 1 1.7200 4.7731 -1.9694 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449013839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:32 Heat of formation + Delta-G solvation = 64.511660 kcal Electronic energy + Delta-G solvation = -23112.078072 eV Core-core repulsion = 20065.383011 eV Total energy + Delta-G solvation = -3046.695061 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.02259 -38.74810 -37.91970 -34.21214 -33.73454 -32.74272 -30.92269 -29.72617 -28.21437 -27.38722 -27.23879 -23.80989 -22.85484 -22.15073 -21.52366 -21.02251 -19.87576 -18.67780 -17.82090 -16.78134 -16.60299 -16.12317 -15.76166 -15.60618 -15.27130 -14.85179 -14.59633 -14.51492 -14.28387 -14.14762 -13.72850 -13.27683 -12.86066 -12.81529 -12.69035 -12.62975 -12.52769 -12.33956 -12.11571 -12.08688 -12.02926 -11.96832 -11.72560 -11.69690 -11.51311 -11.30671 -11.17431 -10.51042 -9.95103 -9.18639 -8.57383 -7.84535 -5.45443 1.17555 1.44242 1.47141 1.55615 1.82066 2.13480 2.51484 3.27180 3.47774 3.59072 3.77271 3.80320 4.08328 4.11252 4.26507 4.33677 4.37663 4.44252 4.49879 4.51144 4.57287 4.72272 4.73273 4.83415 4.86741 4.91264 4.94959 5.01287 5.06223 5.12262 5.15463 5.21210 5.27176 5.28202 5.38364 5.42502 5.54360 5.57518 5.69178 5.87430 5.99537 6.40941 6.48411 7.02177 7.17268 7.81492 8.35022 9.12806 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.007167 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.779559 B = 3906.056009 C = 4778.494615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C 0.148 3.852 4 N -0.581 5.581 5 C -0.264 4.264 6 H 0.060 0.940 7 C -0.028 4.028 8 N -0.910 5.910 9 Si 0.953 3.047 10 H -0.288 1.288 11 H -0.295 1.295 12 H -0.268 1.268 13 C 0.197 3.803 14 C 0.084 3.916 15 C -0.297 4.297 16 C 0.031 3.969 17 N -0.332 5.332 18 N -0.358 5.358 19 C 0.153 3.847 20 C -0.125 4.125 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.124 4.124 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.247 0.753 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.198 0.802 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 -3.499 -11.781 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.023 3.977 4 N -0.300 5.300 5 C -0.395 4.395 6 H 0.078 0.922 7 C -0.226 4.226 8 N -0.553 5.553 9 Si 0.781 3.219 10 H -0.215 1.215 11 H -0.221 1.221 12 H -0.192 1.192 13 C 0.069 3.931 14 C -0.047 4.047 15 C -0.327 4.327 16 C -0.153 4.153 17 N -0.154 5.154 18 N -0.141 5.141 19 C 0.052 3.948 20 C -0.163 4.163 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.162 4.162 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.215 0.785 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.534 -2.798 -12.430 13.891 hybrid contribution 1.226 0.159 2.148 2.479 sum -4.307 -2.639 -10.282 11.456 Atomic orbital electron populations 1.21645 0.94954 1.01793 1.01295 1.21971 0.95905 0.98786 1.00621 1.20981 0.82646 0.93932 1.00151 1.44099 1.01505 1.83784 1.00640 1.19230 1.09388 1.18726 0.92167 0.92238 1.25851 0.99904 0.94370 1.02473 1.70174 1.36122 1.16648 1.32366 0.85529 0.77063 0.78197 0.81128 1.21453 1.22120 1.19241 1.19866 0.97777 0.87707 0.87754 1.22783 0.90268 0.99226 0.92448 1.21275 1.01675 0.97503 1.12260 1.24063 0.95136 0.98709 0.97429 1.76994 1.09359 1.02576 1.26490 1.48711 1.14015 1.12082 1.39246 1.22173 0.77752 0.98340 0.96568 1.22734 0.99216 1.02590 0.91807 1.22462 0.94687 0.98446 0.99044 1.22298 1.00606 0.98600 0.93673 1.22377 0.97048 0.97881 0.98914 0.91468 0.94251 0.92188 0.92404 0.94180 0.92860 0.95012 0.94428 0.91420 0.90697 0.84706 0.78505 0.88146 0.91851 0.89517 0.89305 0.89394 0.89743 0.92420 0.91105 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.91 71.98 0.71 -3.33 16 2 C -0.13 -4.78 6.25 30.59 0.19 -4.59 16 3 C 0.15 6.53 5.22 86.38 0.45 6.98 16 4 N -0.58 -27.31 2.40 -706.35 -1.70 -29.01 16 5 C -0.26 -13.98 9.46 84.03 0.79 -13.19 16 6 H 0.06 3.12 7.91 -2.91 -0.02 3.10 16 7 C -0.03 -1.52 4.93 84.86 0.42 -1.10 16 8 N -0.91 -53.03 11.53 21.65 0.25 -52.78 16 9 Si 0.95 44.38 29.60 68.60 2.03 46.41 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.20 7.97 5.66 85.63 0.48 8.46 16 14 C 0.08 3.56 6.51 41.40 0.27 3.83 16 15 C -0.30 -12.54 10.72 21.99 0.24 -12.30 16 16 C 0.03 1.23 12.02 85.24 1.02 2.26 16 17 N -0.33 -13.70 12.03 -57.03 -0.69 -14.39 16 18 N -0.36 -14.26 3.20 -310.88 -1.00 -15.26 16 19 C 0.15 5.02 3.00 45.72 0.14 5.16 16 20 C -0.13 -3.20 6.52 31.70 0.21 -2.99 16 21 C -0.11 -2.16 6.91 31.91 0.22 -1.94 16 22 C -0.11 -2.82 6.83 31.67 0.22 -2.60 16 23 C -0.12 -4.11 6.11 31.32 0.19 -3.92 16 24 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 2.81 5.61 -2.39 -0.01 2.79 16 30 H 0.03 1.33 4.23 -2.38 -0.01 1.32 16 31 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.07 2.37 7.25 -2.38 -0.02 2.35 16 33 H 0.07 2.93 8.04 -2.39 -0.02 2.91 16 34 H 0.14 5.48 8.06 -2.91 -0.02 5.45 16 35 H 0.20 6.14 8.06 -2.91 -0.02 6.12 16 36 H 0.10 3.26 5.15 -2.39 -0.01 3.25 16 37 H 0.06 1.86 7.72 -2.39 -0.02 1.84 16 38 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.32 7.51 -2.39 -0.02 2.30 16 44 H 0.03 1.44 7.83 -2.39 -0.02 1.42 16 Total: -1.00 -64.86 347.24 5.41 -59.44 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.96 Total: 24.87 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 5.56 Total: -19.28 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -3.13 Total: -111.45 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.86 5.41 -59.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449013839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.956 kcal (2) G-P(sol) polarization free energy of solvation -64.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds