Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47049 * 89.99950 * 8 6 4 10 10 H 1.48499 * 109.47170 * 209.99777 * 8 6 4 11 11 H 1.48502 * 109.47245 * 329.99617 * 8 6 4 12 12 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 13 13 C 1.46901 * 110.99688 * 176.04721 * 12 2 1 14 14 C 1.46898 * 110.99897 * 299.99595 * 12 2 1 15 15 C 1.50702 * 109.47240 * 170.00393 * 14 12 2 16 16 C 1.35318 * 126.12653 * 94.68247 * 15 14 12 17 17 C 1.39874 * 107.91968 * 179.90952 * 16 15 14 18 18 N 1.30836 * 108.20239 * 0.36591 * 17 16 15 19 19 N 1.34955 * 126.12721 * 275.00724 * 15 14 12 20 20 C 1.46493 * 126.03571 * 359.97438 * 19 15 14 21 21 C 1.54270 * 110.03365 * 237.17024 * 20 19 15 22 22 C 1.54885 * 104.19672 * 217.10502 * 21 20 19 23 23 C 1.54892 * 102.74871 * 37.94231 * 22 21 20 24 24 C 1.53868 * 110.03499 * 120.00473 * 20 19 15 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47195 * 59.99543 * 13 12 2 30 30 H 1.08997 * 109.47468 * 179.97438 * 13 12 2 31 31 H 1.08998 * 109.46987 * 299.99785 * 13 12 2 32 32 H 1.09000 * 109.47504 * 289.99876 * 14 12 2 33 33 H 1.09001 * 109.47202 * 50.00478 * 14 12 2 34 34 H 1.07994 * 126.04115 * 0.05250 * 16 15 14 35 35 H 1.08000 * 125.90279 * 180.14877 * 17 16 15 36 36 H 1.09000 * 110.01746 * 358.60996 * 20 19 15 37 37 H 1.09008 * 110.48239 * 335.78760 * 21 20 19 38 38 H 1.09004 * 110.48654 * 98.42288 * 21 20 19 39 39 H 1.08998 * 110.75627 * 279.62205 * 22 21 20 40 40 H 1.09005 * 110.75434 * 156.25336 * 22 21 20 41 41 H 1.09001 * 110.48728 * 203.38140 * 23 22 21 42 42 H 1.09000 * 110.60056 * 80.78842 * 23 22 21 43 43 H 1.09002 * 110.03275 * 238.57214 * 24 20 19 44 44 H 1.08998 * 110.03136 * 359.94832 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1403 -5.1119 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8578 -0.8910 3.6160 16 6 2.9515 -0.7969 4.4073 17 6 2.8513 -1.7786 5.3986 18 7 1.7413 -2.4435 5.2045 19 7 1.0966 -1.9020 4.0849 20 6 -0.1783 -2.3534 3.5222 21 6 -1.2834 -2.2863 4.5965 22 6 -2.1613 -3.5313 4.3167 23 6 -1.1167 -4.6040 3.9201 24 6 -0.0725 -3.8270 3.0921 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7083 1.1609 -3.4845 29 1 3.9187 0.2051 1.1592 30 1 3.8209 -1.3109 2.0863 31 1 3.8029 -1.3532 0.3068 32 1 2.0519 0.9346 2.5281 33 1 0.4722 0.1325 2.3563 34 1 3.7579 -0.0875 4.2948 35 1 3.5681 -1.9591 6.1859 36 1 -0.4494 -1.7336 2.6676 37 1 -0.8490 -2.3423 5.5947 38 1 -1.8690 -1.3737 4.4850 39 1 -2.8509 -3.3408 3.4944 40 1 -2.7022 -3.8321 5.2140 41 1 -1.5807 -5.3828 3.3148 42 1 -0.6549 -5.0362 4.8077 43 1 -0.2928 -3.9224 2.0289 44 1 0.9279 -4.2060 3.3012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449022114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = 75.117211 kcal Electronic energy + Delta-G solvation = -22610.679888 eV Core-core repulsion = 19564.444719 eV Total energy + Delta-G solvation = -3046.235169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03366 -37.75265 -36.98769 -33.04816 -31.97373 -30.51056 -28.96922 -28.72170 -27.19099 -26.81659 -24.68259 -23.22819 -21.79644 -20.72049 -20.22120 -19.64116 -18.65392 -16.78212 -16.20574 -15.61526 -15.26104 -14.89719 -14.43785 -14.20847 -13.66443 -13.56369 -13.43066 -13.28195 -13.09036 -12.57218 -11.98424 -11.90304 -11.64443 -11.49905 -11.18121 -11.13410 -11.11474 -11.06573 -10.86404 -10.72530 -10.65148 -10.54367 -10.21964 -10.19061 -10.10240 -9.90394 -9.02615 -8.84927 -8.47104 -8.13766 -7.27967 -6.06419 -4.10869 2.22693 2.82214 3.16033 3.27812 3.34530 3.37931 4.37254 4.49875 4.57951 4.81744 4.96847 5.06842 5.16363 5.26646 5.35466 5.45966 5.49783 5.52131 5.63399 5.64158 5.81343 5.85772 5.94543 6.00372 6.04601 6.07467 6.22990 6.24315 6.33467 6.33578 6.38203 6.53384 6.72706 6.78776 6.93122 7.00508 7.05841 7.39695 7.44228 7.61623 7.77454 8.07234 8.12406 8.24264 8.50515 8.95322 9.54420 11.00417 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.005272 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.627665 B = 5309.644633 C = 6034.728916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.036 3.964 14 C 0.103 3.897 15 C 0.116 3.884 16 C -0.284 4.284 17 C 0.038 3.962 18 N -0.304 5.304 19 N -0.349 5.349 20 C 0.160 3.840 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.126 4.126 25 H 0.087 0.913 26 H 0.034 0.966 27 H 0.007 0.993 28 H 0.261 0.739 29 H 0.013 0.987 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.175 0.825 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -4.874 13.162 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.256 5.256 13 C -0.112 4.112 14 C -0.027 4.027 15 C -0.013 4.013 16 C -0.314 4.314 17 C -0.147 4.147 18 N -0.126 5.126 19 N -0.131 5.131 20 C 0.058 3.942 21 C -0.171 4.171 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.164 4.164 25 H 0.106 0.894 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.157 0.843 35 H 0.192 0.808 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.772 -6.222 13.348 15.202 hybrid contribution 1.304 1.147 -1.190 2.105 sum -2.468 -5.075 12.158 13.404 Atomic orbital electron populations 1.21893 0.97826 0.99576 0.99969 1.19283 0.92221 0.92159 0.85666 0.98187 1.21115 1.31104 1.12299 0.89586 0.91840 1.24919 0.95188 0.95040 0.99012 1.69880 1.36901 1.22980 1.23489 0.86519 0.79260 0.79294 0.82469 1.20675 1.21308 1.19925 1.62178 1.10050 1.52205 1.01137 1.22248 0.88168 0.99260 1.01542 1.20756 1.01546 0.93089 0.87280 1.21195 0.92291 0.91436 0.96367 1.21161 1.01765 1.07389 1.01110 1.23664 0.96031 0.95322 0.99689 1.77190 1.09321 1.22216 1.03853 1.48669 1.17819 1.24646 1.21924 1.22013 0.79199 0.97187 0.95822 1.22749 0.96005 0.98776 0.99531 1.22454 0.97375 0.94765 1.01326 1.22324 0.96062 0.97576 0.99839 1.22414 1.00542 0.92945 1.00544 0.89404 0.94681 0.97446 0.92939 0.96855 0.93220 0.90672 0.93313 0.89779 0.84349 0.80805 0.87169 0.90179 0.91181 0.91082 0.91352 0.91535 0.91495 0.90300 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.76 37.16 0.33 -2.77 16 2 C 0.21 5.14 2.06 -68.86 -0.14 5.00 16 3 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 4 C -0.50 -13.34 7.93 -34.44 -0.27 -13.61 16 5 H 0.06 1.70 6.39 -52.49 -0.34 1.36 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.53 -11.03 4.61 -237.72 -1.10 -12.13 16 13 C 0.04 0.72 9.04 60.07 0.54 1.26 16 14 C 0.10 1.85 4.75 -4.98 -0.02 1.83 16 15 C 0.12 1.95 5.69 -82.26 -0.47 1.49 16 16 C -0.28 -4.39 9.57 -40.01 -0.38 -4.77 16 17 C 0.04 0.56 12.03 -17.36 -0.21 0.35 16 18 N -0.30 -4.93 12.03 30.63 0.37 -4.56 16 19 N -0.35 -5.66 3.20 -49.62 -0.16 -5.82 16 20 C 0.16 2.32 3.70 -66.82 -0.25 2.07 16 21 C -0.13 -1.61 6.51 -25.07 -0.16 -1.78 16 22 C -0.12 -1.26 6.91 -24.74 -0.17 -1.43 16 23 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 24 C -0.13 -1.75 6.55 -25.62 -0.17 -1.92 16 25 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.91 6.31 -51.93 -0.33 0.58 16 31 H 0.07 1.59 6.23 -51.93 -0.32 1.27 16 32 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 33 H 0.08 1.49 5.00 -51.93 -0.26 1.23 16 34 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.11 1.71 6.82 -51.93 -0.35 1.35 16 37 H 0.08 1.07 7.70 -51.92 -0.40 0.67 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.18 7.85 -51.93 -0.41 0.77 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -28.34 342.06 -9.02 -37.36 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.25 Total: 2.51 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.64 Total: -14.30 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.26 Total: -46.67 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.34 -9.02 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449022114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.477 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds