Wall clock time and date at job start Mon Mar 30 2020 01:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47380 * 2 1 4 4 H 1.08998 * 109.47232 * 54.96922 * 3 2 1 5 5 C 1.50702 * 109.47607 * 174.97000 * 3 2 1 6 6 H 1.07995 * 120.00223 * 120.00305 * 5 3 2 7 7 C 1.37880 * 119.99468 * 299.72941 * 5 3 2 8 8 N 1.31507 * 120.00271 * 0.26745 * 7 5 3 9 9 Si 1.86797 * 119.99688 * 180.27361 * 7 5 3 10 10 H 1.48503 * 109.47436 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47422 * 119.99720 * 9 7 5 12 12 H 1.48498 * 109.47124 * 239.99875 * 9 7 5 13 13 N 1.46899 * 109.47325 * 294.97339 * 3 2 1 14 14 C 1.46897 * 111.00309 * 154.10664 * 13 3 2 15 15 C 1.50701 * 109.47364 * 185.52653 * 14 13 3 16 16 C 1.35314 * 126.13011 * 95.01427 * 15 14 13 17 17 C 1.39867 * 107.92317 * 179.97438 * 16 15 14 18 18 N 1.30838 * 108.20421 * 0.02562 * 17 16 15 19 19 N 1.34955 * 126.12519 * 274.71382 * 15 14 13 20 20 C 1.46501 * 126.03483 * 0.02948 * 19 15 14 21 21 C 1.54265 * 110.02747 * 237.16939 * 20 19 15 22 22 C 1.54894 * 104.19144 * 217.10502 * 21 20 19 23 23 C 1.54889 * 102.74968 * 37.94593 * 22 21 20 24 24 C 1.53872 * 110.02891 * 120.00375 * 20 19 15 25 25 H 1.09005 * 109.46618 * 305.06443 * 1 2 3 26 26 H 1.08994 * 109.47291 * 65.06513 * 1 2 3 27 27 H 1.09003 * 109.46950 * 185.06757 * 1 2 3 28 28 H 1.09003 * 109.47006 * 240.00272 * 2 1 3 29 29 H 1.08994 * 109.47356 * 120.00471 * 2 1 3 30 30 H 0.97000 * 119.99958 * 179.97438 * 8 7 5 31 31 H 1.00910 * 110.99613 * 278.05757 * 13 3 2 32 32 H 1.09000 * 109.46892 * 305.52324 * 14 13 3 33 33 H 1.09000 * 109.47746 * 65.52382 * 14 13 3 34 34 H 1.08003 * 126.03848 * 359.97438 * 16 15 14 35 35 H 1.08001 * 125.90279 * 180.02562 * 17 16 15 36 36 H 1.08999 * 110.01893 * 358.61242 * 20 19 15 37 37 H 1.08998 * 110.49107 * 335.78463 * 21 20 19 38 38 H 1.09004 * 110.48820 * 98.43366 * 21 20 19 39 39 H 1.09000 * 110.76187 * 279.62829 * 22 21 20 40 40 H 1.09000 * 110.75811 * 156.25755 * 22 21 20 41 41 H 1.08996 * 110.48784 * 203.37711 * 23 22 21 42 42 H 1.08998 * 110.60264 * 80.78976 * 23 22 21 43 43 H 1.09007 * 110.03114 * 238.56524 * 24 20 19 44 44 H 1.08998 * 110.03797 * 359.94822 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6050 1.9816 0.8415 5 6 3.5419 1.4443 0.1246 6 1 4.1475 1.8888 -0.6513 7 6 4.1424 0.8835 1.2318 8 7 3.4049 0.3424 2.1766 9 14 6.0036 0.8927 1.3899 10 1 6.5982 1.5559 0.2017 11 1 6.3927 1.6331 2.6170 12 1 6.4999 -0.5043 1.4765 13 7 1.6520 2.0990 -1.2555 14 6 1.5526 3.5541 -1.0798 15 6 1.0233 4.1779 -2.3454 16 6 -0.2697 4.4804 -2.6055 17 6 -0.3313 5.0421 -3.8850 18 7 0.8811 5.0751 -4.3757 19 7 1.7547 4.5402 -3.4201 20 6 3.2055 4.3959 -3.5635 21 6 3.8469 5.7689 -3.8524 22 6 4.9839 5.4532 -4.8559 23 6 4.3560 4.3550 -5.7495 24 6 3.5290 3.4970 -4.7697 25 1 -0.3633 0.5904 0.8412 26 1 -0.3633 0.4332 -0.9318 27 1 -0.3633 -1.0237 0.0908 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8274 -0.0524 2.9554 31 1 2.2947 1.8676 -1.9982 32 1 0.8751 3.7750 -0.2550 33 1 2.5390 3.9617 -0.8588 34 1 -1.1064 4.3170 -1.9424 35 1 -1.2253 5.3887 -4.3821 36 1 3.6296 3.9686 -2.6550 37 1 3.1182 6.4436 -4.3015 38 1 4.2542 6.1997 -2.9377 39 1 5.8632 5.0725 -4.3363 40 1 5.2342 6.3349 -5.4459 41 1 5.1345 3.7541 -6.2193 42 1 3.7097 4.7994 -6.5064 43 1 4.1110 2.6338 -4.4466 44 1 2.6067 3.1673 -5.2479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449244703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:40 Heat of formation + Delta-G solvation = 56.292209 kcal Electronic energy + Delta-G solvation = -22301.167417 eV Core-core repulsion = 19254.115934 eV Total energy + Delta-G solvation = -3047.051483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99688 -37.79582 -36.29581 -33.06043 -31.89605 -31.30656 -29.53418 -28.79667 -27.22251 -26.60758 -24.29103 -22.47339 -21.80999 -20.80055 -20.20925 -19.53874 -18.79236 -16.80739 -16.59011 -15.68729 -15.01978 -14.88371 -14.53519 -14.14726 -13.68960 -13.51260 -13.44394 -13.30224 -12.89178 -12.40817 -12.17038 -11.70904 -11.58287 -11.54428 -11.28026 -11.19884 -11.18697 -11.17479 -11.01359 -10.88017 -10.72329 -10.63830 -10.29311 -10.13104 -9.67120 -9.61506 -9.14781 -8.90163 -8.46570 -8.12791 -7.38631 -6.08294 -4.22024 2.23200 2.78165 3.19552 3.20865 3.28854 3.30102 4.31563 4.42222 4.50600 4.76886 5.02496 5.04806 5.18230 5.25130 5.38211 5.41793 5.47754 5.56108 5.58024 5.66971 5.77295 5.81220 5.96954 5.99648 6.13731 6.14746 6.18429 6.25861 6.31126 6.38205 6.49095 6.63484 6.69062 7.02272 7.05909 7.15495 7.33595 7.42252 7.51273 7.69306 7.98170 8.02266 8.08870 8.21546 8.51518 8.89246 9.46142 10.92004 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.005995 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.600031 B = 4669.163255 C = 6054.411158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.679 5.679 14 C 0.124 3.876 15 C 0.107 3.893 16 C -0.269 4.269 17 C 0.038 3.962 18 N -0.305 5.305 19 N -0.360 5.360 20 C 0.155 3.845 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.131 4.131 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.024 0.976 28 H 0.030 0.970 29 H 0.091 0.909 30 H 0.262 0.738 31 H 0.326 0.674 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.142 0.858 35 H 0.175 0.825 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 8.128 -10.655 13.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.053 0.947 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.308 5.308 14 C -0.007 4.007 15 C -0.021 4.021 16 C -0.299 4.299 17 C -0.148 4.148 18 N -0.126 5.126 19 N -0.143 5.143 20 C 0.053 3.947 21 C -0.169 4.169 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.169 4.169 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.159 0.841 35 H 0.192 0.808 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.950 8.229 -11.370 14.067 hybrid contribution 1.414 -0.084 1.010 1.739 sum 0.464 8.145 -10.360 13.186 Atomic orbital electron populations 1.21692 0.98851 0.98376 1.00478 1.21484 0.92238 0.98954 1.01674 1.19206 0.92932 0.91376 0.85690 0.94720 1.21841 0.92595 1.38827 1.05506 0.92962 1.24915 0.97928 0.94859 0.95648 1.69878 1.34806 1.38004 1.09276 0.86619 0.85996 0.77861 0.77989 1.19942 1.20972 1.20872 1.60926 1.55117 1.04416 1.10391 1.20416 0.99228 0.90358 0.90700 1.21399 0.92059 0.97582 0.91073 1.21153 0.96181 1.13317 0.99272 1.23708 0.95710 1.00294 0.95079 1.77178 1.00094 1.21201 1.14152 1.48715 1.06483 1.47589 1.11492 1.22017 0.75035 0.97004 1.00630 1.22720 0.98084 0.96151 0.99925 1.22465 0.97554 0.98823 0.97160 1.22304 0.98782 0.96898 0.97696 1.22479 1.01190 0.98062 0.95149 0.94367 0.93396 0.95640 0.95121 0.89092 0.92803 0.85751 0.89396 0.94387 0.84058 0.80765 0.87555 0.90054 0.91077 0.91104 0.91245 0.91495 0.91352 0.90495 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.74 37.16 0.36 -2.41 16 2 C -0.10 -2.44 5.45 -26.74 -0.15 -2.59 16 3 C 0.22 5.07 1.97 -68.87 -0.14 4.94 16 4 H 0.03 0.90 7.70 -51.93 -0.40 0.50 16 5 C -0.55 -14.01 8.47 -34.44 -0.29 -14.30 16 6 H 0.05 1.32 7.73 -52.49 -0.41 0.91 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.07 11.30 55.43 0.63 -23.44 16 9 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.67 5.75 -109.23 -0.63 -14.30 16 14 C 0.12 2.26 5.49 -4.98 -0.03 2.23 16 15 C 0.11 1.80 6.49 -82.26 -0.53 1.27 16 16 C -0.27 -4.23 10.72 -40.01 -0.43 -4.66 16 17 C 0.04 0.55 12.03 -17.37 -0.21 0.34 16 18 N -0.30 -4.91 12.03 30.62 0.37 -4.54 16 19 N -0.36 -5.75 3.20 -49.62 -0.16 -5.91 16 20 C 0.16 2.21 3.70 -66.81 -0.25 1.96 16 21 C -0.13 -1.61 6.51 -25.07 -0.16 -1.77 16 22 C -0.12 -1.27 6.91 -24.74 -0.17 -1.44 16 23 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 24 C -0.13 -1.70 6.55 -25.61 -0.17 -1.87 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 2.36 5.96 -51.93 -0.31 2.05 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.33 6.63 8.45 -39.29 -0.33 6.30 16 32 H 0.09 1.59 7.92 -51.93 -0.41 1.18 16 33 H 0.04 0.72 7.28 -51.93 -0.38 0.34 16 34 H 0.14 2.03 8.06 -52.48 -0.42 1.60 16 35 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.11 1.61 6.81 -51.93 -0.35 1.26 16 37 H 0.08 1.09 7.70 -51.93 -0.40 0.69 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 44 H 0.08 1.13 7.85 -51.93 -0.41 0.72 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -27.34 352.30 -9.52 -36.86 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.59 Total: 8.75 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.42 Total: -18.04 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.21 Total: -48.20 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.34 -9.52 -36.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449244703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.153 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds