Wall clock time and date at job start Mon Mar 30 2020 01:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47380 * 2 1 4 4 H 1.08998 * 109.47232 * 54.96922 * 3 2 1 5 5 C 1.50702 * 109.47607 * 174.97000 * 3 2 1 6 6 H 1.07995 * 120.00223 * 120.00305 * 5 3 2 7 7 C 1.37880 * 119.99468 * 299.72941 * 5 3 2 8 8 N 1.31507 * 120.00271 * 0.26745 * 7 5 3 9 9 Si 1.86797 * 119.99688 * 180.27361 * 7 5 3 10 10 H 1.48503 * 109.47436 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47422 * 119.99720 * 9 7 5 12 12 H 1.48498 * 109.47124 * 239.99875 * 9 7 5 13 13 N 1.46899 * 109.47325 * 294.97339 * 3 2 1 14 14 C 1.46897 * 111.00309 * 154.10664 * 13 3 2 15 15 C 1.50701 * 109.47364 * 185.52653 * 14 13 3 16 16 C 1.35314 * 126.13011 * 95.01427 * 15 14 13 17 17 C 1.39867 * 107.92317 * 179.97438 * 16 15 14 18 18 N 1.30838 * 108.20421 * 0.02562 * 17 16 15 19 19 N 1.34955 * 126.12519 * 274.71382 * 15 14 13 20 20 C 1.46501 * 126.03483 * 0.02948 * 19 15 14 21 21 C 1.54265 * 110.02747 * 237.16939 * 20 19 15 22 22 C 1.54894 * 104.19144 * 217.10502 * 21 20 19 23 23 C 1.54889 * 102.74968 * 37.94593 * 22 21 20 24 24 C 1.53872 * 110.02891 * 120.00375 * 20 19 15 25 25 H 1.09005 * 109.46618 * 305.06443 * 1 2 3 26 26 H 1.08994 * 109.47291 * 65.06513 * 1 2 3 27 27 H 1.09003 * 109.46950 * 185.06757 * 1 2 3 28 28 H 1.09003 * 109.47006 * 240.00272 * 2 1 3 29 29 H 1.08994 * 109.47356 * 120.00471 * 2 1 3 30 30 H 0.97000 * 119.99958 * 179.97438 * 8 7 5 31 31 H 1.00910 * 110.99613 * 278.05757 * 13 3 2 32 32 H 1.09000 * 109.46892 * 305.52324 * 14 13 3 33 33 H 1.09000 * 109.47746 * 65.52382 * 14 13 3 34 34 H 1.08003 * 126.03848 * 359.97438 * 16 15 14 35 35 H 1.08001 * 125.90279 * 180.02562 * 17 16 15 36 36 H 1.08999 * 110.01893 * 358.61242 * 20 19 15 37 37 H 1.08998 * 110.49107 * 335.78463 * 21 20 19 38 38 H 1.09004 * 110.48820 * 98.43366 * 21 20 19 39 39 H 1.09000 * 110.76187 * 279.62829 * 22 21 20 40 40 H 1.09000 * 110.75811 * 156.25755 * 22 21 20 41 41 H 1.08996 * 110.48784 * 203.37711 * 23 22 21 42 42 H 1.08998 * 110.60264 * 80.78976 * 23 22 21 43 43 H 1.09007 * 110.03114 * 238.56524 * 24 20 19 44 44 H 1.08998 * 110.03797 * 359.94822 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6050 1.9816 0.8415 5 6 3.5419 1.4443 0.1246 6 1 4.1475 1.8888 -0.6513 7 6 4.1424 0.8835 1.2318 8 7 3.4049 0.3424 2.1766 9 14 6.0036 0.8927 1.3899 10 1 6.5982 1.5559 0.2017 11 1 6.3927 1.6331 2.6170 12 1 6.4999 -0.5043 1.4765 13 7 1.6520 2.0990 -1.2555 14 6 1.5526 3.5541 -1.0798 15 6 1.0233 4.1779 -2.3454 16 6 -0.2697 4.4804 -2.6055 17 6 -0.3313 5.0421 -3.8850 18 7 0.8811 5.0751 -4.3757 19 7 1.7547 4.5402 -3.4201 20 6 3.2055 4.3959 -3.5635 21 6 3.8469 5.7689 -3.8524 22 6 4.9839 5.4532 -4.8559 23 6 4.3560 4.3550 -5.7495 24 6 3.5290 3.4970 -4.7697 25 1 -0.3633 0.5904 0.8412 26 1 -0.3633 0.4332 -0.9318 27 1 -0.3633 -1.0237 0.0908 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8274 -0.0524 2.9554 31 1 2.2947 1.8676 -1.9982 32 1 0.8751 3.7750 -0.2550 33 1 2.5390 3.9617 -0.8588 34 1 -1.1064 4.3170 -1.9424 35 1 -1.2253 5.3887 -4.3821 36 1 3.6296 3.9686 -2.6550 37 1 3.1182 6.4436 -4.3015 38 1 4.2542 6.1997 -2.9377 39 1 5.8632 5.0725 -4.3363 40 1 5.2342 6.3349 -5.4459 41 1 5.1345 3.7541 -6.2193 42 1 3.7097 4.7994 -6.5064 43 1 4.1110 2.6338 -4.4466 44 1 2.6067 3.1673 -5.2479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449244703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:39 Heat of formation + Delta-G solvation = 42.078567 kcal Electronic energy + Delta-G solvation = -22301.783766 eV Core-core repulsion = 19254.115934 eV Total energy + Delta-G solvation = -3047.667832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.21331 -38.79974 -38.06437 -34.78153 -33.40993 -32.78258 -30.99081 -29.77008 -28.41654 -28.27252 -25.95328 -24.22602 -22.93817 -21.78898 -21.51074 -21.22605 -19.98471 -18.72853 -17.85089 -16.85974 -16.69918 -16.21213 -15.82201 -15.64978 -15.28652 -14.79357 -14.70446 -14.43559 -14.31722 -14.01082 -13.71101 -13.22180 -13.12085 -12.93167 -12.81323 -12.71497 -12.61521 -12.51574 -12.13715 -12.11293 -12.06657 -11.96303 -11.54096 -11.53383 -11.49193 -11.33371 -11.03352 -10.47949 -10.14906 -9.38108 -9.12258 -8.07237 -6.28839 0.96876 1.37001 1.40668 1.49082 1.60680 2.00547 2.39261 3.14031 3.38964 3.50105 3.58814 3.80712 3.91894 4.05237 4.18146 4.30471 4.40589 4.43291 4.52259 4.60176 4.68702 4.72039 4.77326 4.79353 4.82131 4.91803 4.94147 4.95890 5.11962 5.13942 5.16600 5.20679 5.36522 5.38788 5.42878 5.49890 5.60945 5.75500 5.87658 6.06983 6.13178 6.17769 6.32864 6.69699 6.87378 6.95010 7.42679 8.90362 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.005995 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.600031 B = 4669.163255 C = 6054.411158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C 0.223 3.777 4 H 0.007 0.993 5 C -0.558 4.558 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.134 3.866 15 C 0.087 3.913 16 C -0.272 4.272 17 C 0.041 3.959 18 N -0.318 5.318 19 N -0.362 5.362 20 C 0.147 3.853 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.128 4.128 25 H 0.033 0.967 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.262 0.738 31 H 0.326 0.674 32 H 0.085 0.915 33 H 0.028 0.972 34 H 0.154 0.846 35 H 0.211 0.789 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 8.836 -12.049 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.115 3.885 4 H 0.025 0.975 5 C -0.597 4.597 6 H 0.070 0.930 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.299 5.299 14 C 0.003 3.997 15 C -0.041 4.041 16 C -0.302 4.302 17 C -0.144 4.144 18 N -0.139 5.139 19 N -0.145 5.145 20 C 0.045 3.955 21 C -0.164 4.164 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.166 4.166 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.171 0.829 35 H 0.228 0.772 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.645 8.947 -12.780 15.613 hybrid contribution 1.262 -0.283 1.436 1.933 sum 0.617 8.664 -11.343 14.287 Atomic orbital electron populations 1.21549 0.96422 0.99557 1.00632 1.21355 0.94389 0.98271 1.00009 1.18974 0.91876 0.91542 0.86103 0.97505 1.22133 0.93774 1.38406 1.05436 0.93042 1.25616 1.01869 0.94723 0.95509 1.70000 1.36333 1.38738 1.09704 0.85682 0.81284 0.77728 0.77994 1.19195 1.20872 1.20761 1.60842 1.54546 1.05699 1.08790 1.20260 0.98720 0.89026 0.91742 1.21235 0.92897 0.98961 0.91016 1.21425 0.95981 1.12768 1.00001 1.24283 0.96343 0.99214 0.94577 1.77161 1.00766 1.21577 1.14443 1.48853 1.07024 1.47446 1.11174 1.22175 0.74468 0.98399 1.00435 1.22685 0.98427 0.94729 1.00594 1.22466 0.96826 0.99357 0.96628 1.22285 0.98824 0.96818 0.97150 1.22450 1.00735 0.98298 0.95114 0.94751 0.92681 0.93842 0.95530 0.91866 0.92841 0.85794 0.89625 0.95418 0.82868 0.77216 0.89102 0.91065 0.90872 0.90393 0.89468 0.89814 0.91492 0.90510 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.74 71.98 0.70 -4.25 16 2 C -0.10 -4.77 5.45 30.59 0.17 -4.61 16 3 C 0.22 10.71 1.97 44.17 0.09 10.79 16 4 H 0.01 0.37 7.70 -2.39 -0.02 0.35 16 5 C -0.56 -28.86 8.47 25.60 0.22 -28.65 16 6 H 0.05 2.61 7.73 -2.91 -0.02 2.59 16 7 C 0.02 1.23 5.29 84.66 0.45 1.68 16 8 N -0.91 -50.41 11.30 21.45 0.24 -50.17 16 9 Si 0.95 41.83 29.54 68.60 2.03 43.85 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.67 -27.21 5.75 -499.48 -2.87 -30.09 16 14 C 0.13 4.92 5.49 85.56 0.47 5.39 16 15 C 0.09 2.90 6.49 41.40 0.27 3.17 16 16 C -0.27 -8.17 10.72 21.99 0.24 -7.94 16 17 C 0.04 1.11 12.03 85.24 1.02 2.14 16 18 N -0.32 -9.84 12.03 -57.02 -0.69 -10.52 16 19 N -0.36 -11.42 3.20 -310.89 -1.00 -12.41 16 20 C 0.15 4.14 3.70 45.71 0.17 4.31 16 21 C -0.13 -2.99 6.51 31.67 0.21 -2.78 16 22 C -0.12 -2.14 6.91 31.89 0.22 -1.92 16 23 C -0.11 -2.25 6.83 31.67 0.22 -2.03 16 24 C -0.13 -3.25 6.55 31.32 0.21 -3.04 16 25 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.05 2.10 7.90 -2.39 -0.02 2.08 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 3.35 5.96 -2.39 -0.01 3.33 16 30 H 0.26 13.88 8.31 -92.71 -0.77 13.10 16 31 H 0.33 13.37 8.45 -89.69 -0.76 12.61 16 32 H 0.09 3.16 7.92 -2.39 -0.02 3.14 16 33 H 0.03 1.07 7.28 -2.39 -0.02 1.05 16 34 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.21 3.95 8.06 -2.91 -0.02 3.92 16 36 H 0.09 2.80 6.81 -2.39 -0.02 2.79 16 37 H 0.07 1.84 7.70 -2.39 -0.02 1.82 16 38 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.06 1.72 7.85 -2.39 -0.02 1.70 16 Total: -1.00 -58.02 352.30 2.56 -55.46 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.21 Total: 31.63 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 4.64 Total: -27.75 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -4.31 Total: -103.19 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -58.02 2.56 -55.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449244703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.540 kcal (2) G-P(sol) polarization free energy of solvation -58.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds