Wall clock time and date at job start Mon Mar 30 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46901 * 109.47859 * 59.99693 * 13 2 1 15 15 C 1.47479 * 110.99903 * 91.52424 * 14 13 2 16 16 C 1.53508 * 87.93044 * 138.71169 * 15 14 13 17 17 H 1.09005 * 114.16965 * 220.14351 * 16 15 14 18 18 C 1.53001 * 114.17210 * 87.62374 * 16 15 14 19 19 C 1.53002 * 117.49658 * 148.12686 * 18 16 15 20 20 C 1.52995 * 60.00079 * 252.50997 * 19 18 16 21 21 C 1.47472 * 111.00441 * 187.50038 * 14 13 2 22 22 H 1.09001 * 113.47968 * 336.06020 * 21 14 13 23 23 C 1.53002 * 113.47782 * 106.52969 * 21 14 13 24 24 C 1.52998 * 117.49725 * 349.11476 * 23 21 14 25 25 C 1.52993 * 59.99929 * 252.51200 * 24 23 21 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 34 34 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 37 37 H 1.09000 * 113.47521 * 253.47663 * 15 14 13 38 38 H 1.08998 * 113.47680 * 23.88482 * 15 14 13 39 39 H 1.08993 * 115.54873 * 293.82844 * 18 16 15 40 40 H 1.09002 * 117.50049 * 0.02562 * 19 18 16 41 41 H 1.09001 * 117.49637 * 145.02181 * 19 18 16 42 42 H 1.08997 * 117.49945 * 252.51322 * 20 19 18 43 43 H 1.09003 * 117.50013 * 107.48640 * 20 19 18 44 44 H 1.09001 * 115.54743 * 134.82498 * 23 21 14 45 45 H 1.08995 * 117.50024 * 0.02562 * 24 23 21 46 46 H 1.09009 * 117.49684 * 145.01857 * 24 23 21 47 47 H 1.09000 * 117.49697 * 252.51005 * 25 24 23 48 48 H 1.08999 * 117.49855 * 107.49678 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 2.6265 -1.5515 3.8526 9 14 1.2471 0.3979 5.2571 10 1 -0.2380 0.3977 5.2567 11 1 1.7422 -0.3021 6.4697 12 1 1.7420 1.7981 5.2577 13 6 2.0401 -0.7211 -1.2492 14 7 1.5504 -0.0287 -2.4487 15 6 2.5153 0.9907 -2.9014 16 6 2.2331 0.5384 -4.3409 17 1 3.1176 0.4948 -4.9765 18 6 1.0497 1.2493 -5.0004 19 6 1.1132 1.4725 -6.5127 20 6 1.2903 2.6540 -5.5570 21 6 1.8711 -0.7933 -3.6683 22 1 2.7214 -1.4647 -3.5490 23 6 0.6559 -1.4813 -4.2935 24 6 -0.6361 -1.5143 -3.4747 25 6 0.1838 -2.7923 -3.6618 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7208 1.2495 33 1 1.6767 -1.7489 1.2492 34 1 2.8608 -1.8829 4.7336 35 1 3.1301 -0.7207 -1.2494 36 1 1.6767 -1.7488 -1.2493 37 1 2.1955 2.0124 -2.6967 38 1 3.5373 0.7959 -2.5764 39 1 0.0733 1.0418 -4.5626 40 1 1.9979 1.1124 -7.0379 41 1 0.1785 1.4118 -7.0701 42 1 0.4722 3.3706 -5.4856 43 1 2.2918 3.0717 -5.4532 44 1 0.5643 -1.3821 -5.3751 45 1 -0.6206 -1.0455 -2.4908 46 1 -1.5782 -1.4366 -4.0176 47 1 -0.2188 -3.5555 -4.3278 48 1 0.7389 -3.1648 -2.8009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449539987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:47 Heat of formation + Delta-G solvation = 69.823340 kcal Electronic energy + Delta-G solvation = -22930.999924 eV Core-core repulsion = 19988.075539 eV Total energy + Delta-G solvation = -2942.924385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80388 -37.09931 -36.47063 -35.39938 -32.34601 -29.33627 -27.01906 -26.57069 -25.85327 -24.73993 -22.77720 -22.35937 -22.29893 -21.47431 -20.84668 -18.36648 -17.88074 -16.28708 -16.16092 -15.72525 -15.09833 -14.85744 -14.39434 -14.17239 -13.76970 -13.41546 -12.86104 -12.79625 -12.65349 -12.24005 -11.96961 -11.67037 -11.59320 -11.32833 -11.26242 -11.16479 -11.00355 -10.88787 -10.74884 -10.60296 -10.38198 -10.30021 -10.21604 -10.06201 -9.97866 -9.91554 -9.57036 -9.52369 -8.91363 -8.82075 -8.43226 -8.28877 -5.93619 -3.93464 3.36335 3.40761 3.43212 3.68788 3.96864 4.18041 4.50547 4.59265 4.63976 4.82871 4.96200 5.06651 5.18401 5.23474 5.32586 5.39461 5.40393 5.42748 5.55192 5.63286 5.69840 5.72404 5.79691 5.83973 5.84841 5.95413 6.03000 6.03625 6.08373 6.21726 6.23233 6.33711 6.35174 6.38257 6.54779 6.63129 6.67283 6.81124 6.86951 6.90822 7.27270 7.30105 7.33023 7.50379 7.73165 7.88867 8.06856 8.51901 9.11758 9.69128 11.18086 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.004288 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.427901 B = 6527.737677 C = 7016.497279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.127 4.127 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.030 3.970 14 N -0.448 5.448 15 C 0.007 3.993 16 C -0.082 4.082 17 H 0.076 0.924 18 C -0.110 4.110 19 C -0.185 4.185 20 C -0.181 4.181 21 C 0.059 3.941 22 H 0.075 0.925 23 C -0.131 4.131 24 C -0.163 4.163 25 C -0.190 4.190 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.011 0.989 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 3.426 -19.789 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.049 4.049 3 C -0.184 4.184 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.098 4.098 14 N -0.170 5.170 15 C -0.122 4.122 16 C -0.101 4.101 17 H 0.094 0.906 18 C -0.128 4.128 19 C -0.222 4.222 20 C -0.218 4.218 21 C -0.051 4.051 22 H 0.093 0.907 23 C -0.150 4.150 24 C -0.200 4.200 25 C -0.227 4.227 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.132 0.868 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.831 3.474 -19.447 19.957 hybrid contribution 0.694 -0.024 0.953 1.179 sum -2.138 3.449 -18.493 18.933 Atomic orbital electron populations 1.21619 0.95261 1.00239 1.00241 1.20486 0.95574 0.95072 0.93758 1.21820 0.99308 0.96731 1.00577 1.19126 0.95770 0.95092 0.90391 1.21204 1.30682 1.11869 0.90620 0.92386 1.25008 0.95430 0.95113 0.99009 1.69957 1.37340 1.23224 1.23334 0.86739 0.79212 0.79788 0.82737 1.20316 1.21459 1.20370 1.22864 0.97252 0.98055 0.91652 1.68910 1.40632 1.07131 1.00344 1.23866 0.95771 0.99244 0.93298 1.22149 0.96631 0.95593 0.95677 0.90616 1.21822 0.99573 0.97293 0.94111 1.22966 1.02740 1.03533 0.92976 1.22891 1.02690 0.91571 1.04678 1.22906 0.95674 0.94153 0.92338 0.90744 1.22007 0.95569 0.99586 0.97844 1.22967 0.93603 1.00371 1.03052 1.22956 1.05200 0.91289 1.03214 0.92753 0.93718 0.94444 0.94538 0.94012 0.92326 0.97105 0.96917 0.93157 0.94574 0.91693 0.89543 0.91615 0.86731 0.89218 0.89209 0.89048 0.89092 0.87910 0.86773 0.89985 0.89613 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 7.62 37.16 0.28 -1.99 16 2 C -0.05 -0.97 0.60 -154.51 -0.09 -1.07 16 3 C -0.13 -2.44 7.37 37.16 0.27 -2.16 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.97 7.65 -34.44 -0.26 -14.24 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.03 0.51 3.88 -3.83 -0.01 0.50 16 14 N -0.45 -6.32 3.65 -236.48 -0.86 -7.19 16 15 C 0.01 0.09 5.59 -7.55 -0.04 0.05 16 16 C -0.08 -0.89 4.13 -90.09 -0.37 -1.26 16 17 H 0.08 0.76 8.12 -51.93 -0.42 0.33 16 18 C -0.11 -1.12 4.34 -90.62 -0.39 -1.52 16 19 C -0.19 -1.61 10.24 -26.73 -0.27 -1.89 16 20 C -0.18 -1.67 10.25 -26.73 -0.27 -1.94 16 21 C 0.06 0.72 3.33 -71.44 -0.24 0.48 16 22 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 23 C -0.13 -1.51 4.55 -90.62 -0.41 -1.92 16 24 C -0.16 -2.03 9.84 -26.74 -0.26 -2.29 16 25 C -0.19 -2.27 10.25 -26.74 -0.27 -2.55 16 26 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 27 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.70 5.63 -51.93 -0.29 0.41 16 31 H 0.06 1.22 6.62 -51.93 -0.34 0.88 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.04 0.63 7.35 -51.93 -0.38 0.25 16 36 H 0.06 1.16 7.73 -51.93 -0.40 0.76 16 37 H 0.09 1.13 6.91 -51.93 -0.36 0.78 16 38 H 0.07 0.86 7.44 -51.93 -0.39 0.47 16 39 H 0.11 1.34 7.51 -51.93 -0.39 0.95 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.09 7.90 -51.93 -0.41 0.68 16 45 H 0.11 1.68 6.27 -51.93 -0.33 1.35 16 46 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.09 1.20 7.77 -51.93 -0.40 0.80 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -28.53 363.26 -11.14 -39.67 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.90 Total: 1.20 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: -2.57 Total: -29.58 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: -0.13 Total: -33.56 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.53 -11.14 -39.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449539987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.493 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds