Wall clock time and date at job start Mon Mar 30 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46901 * 109.47859 * 59.99693 * 13 2 1 15 15 C 1.47479 * 110.99903 * 91.52424 * 14 13 2 16 16 C 1.53508 * 87.93044 * 138.71169 * 15 14 13 17 17 H 1.09005 * 114.16965 * 220.14351 * 16 15 14 18 18 C 1.53001 * 114.17210 * 87.62374 * 16 15 14 19 19 C 1.53002 * 117.49658 * 148.12686 * 18 16 15 20 20 C 1.52995 * 60.00079 * 252.50997 * 19 18 16 21 21 C 1.47472 * 111.00441 * 187.50038 * 14 13 2 22 22 H 1.09001 * 113.47968 * 336.06020 * 21 14 13 23 23 C 1.53002 * 113.47782 * 106.52969 * 21 14 13 24 24 C 1.52998 * 117.49725 * 349.11476 * 23 21 14 25 25 C 1.52993 * 59.99929 * 252.51200 * 24 23 21 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 34 34 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 37 37 H 1.09000 * 113.47521 * 253.47663 * 15 14 13 38 38 H 1.08998 * 113.47680 * 23.88482 * 15 14 13 39 39 H 1.08993 * 115.54873 * 293.82844 * 18 16 15 40 40 H 1.09002 * 117.50049 * 0.02562 * 19 18 16 41 41 H 1.09001 * 117.49637 * 145.02181 * 19 18 16 42 42 H 1.08997 * 117.49945 * 252.51322 * 20 19 18 43 43 H 1.09003 * 117.50013 * 107.48640 * 20 19 18 44 44 H 1.09001 * 115.54743 * 134.82498 * 23 21 14 45 45 H 1.08995 * 117.50024 * 0.02562 * 24 23 21 46 46 H 1.09009 * 117.49684 * 145.01857 * 24 23 21 47 47 H 1.09000 * 117.49697 * 252.51005 * 25 24 23 48 48 H 1.08999 * 117.49855 * 107.49678 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 2.6265 -1.5515 3.8526 9 14 1.2471 0.3979 5.2571 10 1 -0.2380 0.3977 5.2567 11 1 1.7422 -0.3021 6.4697 12 1 1.7420 1.7981 5.2577 13 6 2.0401 -0.7211 -1.2492 14 7 1.5504 -0.0287 -2.4487 15 6 2.5153 0.9907 -2.9014 16 6 2.2331 0.5384 -4.3409 17 1 3.1176 0.4948 -4.9765 18 6 1.0497 1.2493 -5.0004 19 6 1.1132 1.4725 -6.5127 20 6 1.2903 2.6540 -5.5570 21 6 1.8711 -0.7933 -3.6683 22 1 2.7214 -1.4647 -3.5490 23 6 0.6559 -1.4813 -4.2935 24 6 -0.6361 -1.5143 -3.4747 25 6 0.1838 -2.7923 -3.6618 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7208 1.2495 33 1 1.6767 -1.7489 1.2492 34 1 2.8608 -1.8829 4.7336 35 1 3.1301 -0.7207 -1.2494 36 1 1.6767 -1.7488 -1.2493 37 1 2.1955 2.0124 -2.6967 38 1 3.5373 0.7959 -2.5764 39 1 0.0733 1.0418 -4.5626 40 1 1.9979 1.1124 -7.0379 41 1 0.1785 1.4118 -7.0701 42 1 0.4722 3.3706 -5.4856 43 1 2.2918 3.0717 -5.4532 44 1 0.5643 -1.3821 -5.3751 45 1 -0.6206 -1.0455 -2.4908 46 1 -1.5782 -1.4366 -4.0176 47 1 -0.2188 -3.5555 -4.3278 48 1 0.7389 -3.1648 -2.8009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449539987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:47 Heat of formation + Delta-G solvation = 56.887471 kcal Electronic energy + Delta-G solvation = -22931.560865 eV Core-core repulsion = 19988.075539 eV Total energy + Delta-G solvation = -2943.485327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86904 -38.42530 -37.44510 -36.57261 -34.45331 -30.68681 -28.85768 -28.11150 -27.10759 -26.22678 -24.39265 -23.39722 -23.02537 -22.51437 -21.77922 -19.64355 -19.20734 -18.31270 -17.21657 -16.89101 -16.58886 -16.03493 -15.74693 -15.47910 -15.01044 -14.56164 -14.39528 -14.32774 -13.97032 -13.86967 -13.40705 -13.05396 -12.79405 -12.70265 -12.54028 -12.40730 -12.34907 -12.25306 -12.16415 -12.11744 -12.04607 -11.78857 -11.61471 -11.31588 -11.13279 -10.97013 -10.83962 -10.80765 -10.56197 -10.51255 -10.40229 -9.62871 -8.15006 -6.22237 1.39294 1.41729 1.49076 2.42622 2.89899 2.99208 3.17855 3.18673 3.70228 3.76556 3.90581 4.03231 4.10825 4.17524 4.24307 4.26892 4.33135 4.44605 4.48424 4.52700 4.57938 4.69930 4.74746 4.78807 4.80444 4.91270 4.92062 4.92925 4.98159 5.08417 5.10285 5.14280 5.21405 5.23914 5.33244 5.35183 5.39514 5.46178 5.50690 5.54099 5.57368 5.59523 5.60905 5.70575 5.88628 5.92160 6.21456 6.37348 6.92365 7.45053 8.97188 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.004288 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.427901 B = 6527.737677 C = 7016.497279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.045 4.045 3 C -0.116 4.116 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.064 0.936 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.044 3.956 14 N -0.451 5.451 15 C 0.001 3.999 16 C -0.062 4.062 17 H 0.093 0.907 18 C -0.122 4.122 19 C -0.171 4.171 20 C -0.181 4.181 21 C 0.055 3.945 22 H 0.071 0.929 23 C -0.119 4.119 24 C -0.168 4.168 25 C -0.194 4.194 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.039 0.961 32 H -0.019 1.019 33 H -0.020 1.020 34 H 0.260 0.740 35 H 0.029 0.971 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.122 0.878 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 4.887 -21.802 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.045 4.045 3 C -0.174 4.174 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.082 0.918 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.084 4.084 14 N -0.172 5.172 15 C -0.128 4.128 16 C -0.080 4.080 17 H 0.111 0.889 18 C -0.141 4.141 19 C -0.208 4.208 20 C -0.218 4.218 21 C -0.055 4.055 22 H 0.089 0.911 23 C -0.137 4.137 24 C -0.205 4.205 25 C -0.231 4.231 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.058 0.942 32 H -0.001 1.001 33 H -0.001 1.001 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.140 0.860 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.558 4.947 -21.473 22.321 hybrid contribution 0.930 -0.503 1.542 1.869 sum -2.629 4.444 -19.931 20.589 Atomic orbital electron populations 1.21486 0.94545 0.99698 1.00358 1.20348 0.96003 0.95471 0.92701 1.21708 0.98989 0.95754 1.00907 1.18998 0.93745 0.93908 0.92941 1.21572 1.30284 1.11924 0.91499 0.91808 1.25914 0.95665 0.95876 1.02539 1.70103 1.38816 1.24916 1.24092 0.85643 0.78944 0.78823 0.78521 1.19345 1.21212 1.19267 1.22559 0.96549 0.97270 0.92044 1.68904 1.40896 1.07744 0.99700 1.23933 0.95251 0.98689 0.94896 1.22054 0.97498 0.93820 0.94673 0.88926 1.21701 0.98476 0.98422 0.95469 1.23031 1.03578 1.02337 0.91849 1.22950 1.03063 0.91277 1.04492 1.22991 0.96033 0.94981 0.91459 0.91146 1.22035 0.94517 0.98612 0.98528 1.22900 0.94786 1.00540 1.02292 1.22967 1.05186 0.91882 1.03021 0.94505 0.91452 0.95353 0.94919 0.91300 0.94180 1.00059 1.00125 0.93149 0.95310 0.93013 0.89540 0.91875 0.88101 0.88283 0.88373 0.88774 0.88707 0.86040 0.89185 0.88466 0.87856 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.08 7.62 71.98 0.55 -3.54 16 2 C -0.04 -1.84 0.60 -52.18 -0.03 -1.87 16 3 C -0.12 -4.44 7.37 71.98 0.53 -3.91 16 4 C 0.04 2.22 4.04 29.85 0.12 2.34 16 5 C -0.51 -29.16 7.65 25.60 0.20 -28.97 16 6 H 0.06 3.48 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 8 N -0.94 -58.25 13.29 21.45 0.28 -57.97 16 9 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.04 1.56 3.88 86.30 0.33 1.89 16 14 N -0.45 -12.36 3.65 -902.08 -3.29 -15.66 16 15 C 0.00 0.02 5.59 83.57 0.47 0.49 16 16 C -0.06 -1.19 4.13 -10.45 -0.04 -1.23 16 17 H 0.09 1.53 8.12 -2.38 -0.02 1.51 16 18 C -0.12 -2.16 4.34 -10.79 -0.05 -2.21 16 19 C -0.17 -2.37 10.24 30.59 0.31 -2.06 16 20 C -0.18 -2.79 10.25 30.59 0.31 -2.48 16 21 C 0.05 1.26 3.33 42.19 0.14 1.40 16 22 H 0.07 1.72 7.91 -2.39 -0.02 1.70 16 23 C -0.12 -2.50 4.55 -10.80 -0.05 -2.55 16 24 C -0.17 -3.97 9.84 30.59 0.30 -3.67 16 25 C -0.19 -4.46 10.25 30.59 0.31 -4.15 16 26 H 0.04 1.55 6.62 -2.39 -0.02 1.53 16 27 H 0.07 2.33 7.13 -2.39 -0.02 2.32 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 2.24 5.63 -2.39 -0.01 2.22 16 31 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 32 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 33 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.03 1.04 7.35 -2.39 -0.02 1.02 16 36 H 0.05 1.93 7.73 -2.39 -0.02 1.91 16 37 H 0.09 2.08 6.91 -2.39 -0.02 2.07 16 38 H 0.06 1.57 7.44 -2.39 -0.02 1.55 16 39 H 0.10 2.12 7.51 -2.39 -0.02 2.10 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.12 2.16 7.90 -2.39 -0.02 2.15 16 45 H 0.09 2.61 6.27 -2.39 -0.01 2.59 16 46 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.07 1.90 7.77 -2.39 -0.02 1.88 16 Total: -1.00 -62.73 363.26 3.79 -58.94 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.90 Total: 17.73 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 3.87 Total: -50.23 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -3.01 Total: -73.63 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -62.73 3.79 -58.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449539987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.828 kcal (2) G-P(sol) polarization free energy of solvation -62.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds