Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46871 * 2 1 4 4 C 1.52996 * 109.46831 * 240.00091 * 2 1 3 5 5 C 1.50707 * 109.47232 * 60.00130 * 4 2 1 6 6 H 1.08000 * 119.99671 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00003 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00233 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00254 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46958 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47540 * 120.00008 * 9 7 5 12 12 H 1.48503 * 109.47040 * 240.00196 * 9 7 5 13 13 C 1.52995 * 109.46808 * 119.99979 * 2 1 3 14 14 N 1.46908 * 109.46566 * 174.44523 * 13 2 1 15 15 C 1.47480 * 110.99798 * 79.51308 * 14 13 2 16 16 C 1.53516 * 87.93135 * 138.70381 * 15 14 13 17 17 H 1.08992 * 114.17164 * 87.62042 * 16 15 14 18 18 C 1.53005 * 114.16960 * 220.32907 * 16 15 14 19 19 C 1.53000 * 117.49887 * 222.45976 * 18 16 15 20 20 C 1.52998 * 117.49556 * 153.83838 * 18 16 15 21 21 C 1.47485 * 110.99735 * 175.48243 * 14 13 2 22 22 H 1.08991 * 113.47672 * 336.12561 * 21 14 13 23 23 C 1.53001 * 113.47260 * 106.53235 * 21 14 13 24 24 C 1.53004 * 117.49661 * 211.75036 * 23 21 14 25 25 C 1.53001 * 117.49556 * 280.40572 * 23 21 14 26 26 H 1.09008 * 109.46915 * 295.09886 * 1 2 3 27 27 H 1.08998 * 109.47455 * 55.09399 * 1 2 3 28 28 H 1.08999 * 109.47363 * 175.10081 * 1 2 3 29 29 H 1.09001 * 109.47075 * 188.38026 * 3 2 1 30 30 H 1.09005 * 109.47228 * 308.37975 * 3 2 1 31 31 H 1.09004 * 109.47244 * 68.37638 * 3 2 1 32 32 H 1.08998 * 109.46581 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47460 * 299.99838 * 4 2 1 34 34 H 0.96994 * 120.00374 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47389 * 54.44967 * 13 2 1 36 36 H 1.09000 * 109.47373 * 294.43965 * 13 2 1 37 37 H 1.09000 * 113.47475 * 253.46604 * 15 14 13 38 38 H 1.09000 * 113.47779 * 23.87796 * 15 14 13 39 39 H 1.08995 * 115.54957 * 8.17119 * 18 16 15 40 40 H 1.09005 * 117.49335 * 359.97438 * 19 18 16 41 41 H 1.08995 * 117.49748 * 145.01755 * 19 18 16 42 42 H 1.09002 * 117.49969 * 214.97832 * 20 18 16 43 43 H 1.09002 * 117.50354 * 359.97438 * 20 18 16 44 44 H 1.08998 * 115.55083 * 66.07401 * 23 21 14 45 45 H 1.09004 * 117.49289 * 215.00243 * 24 23 21 46 46 H 1.08997 * 117.49636 * 0.02562 * 24 23 21 47 47 H 1.08994 * 117.50368 * 359.97438 * 25 23 21 48 48 H 1.08997 * 117.49714 * 145.00216 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6280 -1.5502 -3.8527 9 14 1.2479 0.3986 -5.2572 10 1 0.4215 1.5644 -4.8530 11 1 2.4025 0.8662 -6.0655 12 1 0.4235 -0.5353 -6.0656 13 6 2.0400 -0.7212 1.2492 14 7 3.5029 -0.8384 1.1840 15 6 4.1523 0.4265 1.5755 16 6 5.1809 -0.4068 2.3529 17 1 6.0358 -0.7286 1.7583 18 6 5.5724 0.1864 3.7079 19 6 7.0534 0.1560 4.0910 20 6 6.0638 -0.7807 4.7869 21 6 4.0411 -1.4329 2.4218 22 1 3.3893 -1.3021 3.2854 23 6 4.5113 -2.8786 2.2490 24 6 4.3807 -3.8126 3.4538 25 6 3.4434 -3.9742 2.2545 26 1 -0.3633 0.4360 0.9307 27 1 -0.3634 0.5880 -0.8427 28 1 -0.3634 -1.0239 -0.0878 29 1 3.1196 1.4462 -0.1498 30 1 1.5595 1.9978 -0.8056 31 1 1.8040 1.9113 0.9554 32 1 3.1299 -0.7208 -1.2494 33 1 1.6767 -1.7489 -1.2493 34 1 2.8623 -1.8816 -4.7337 35 1 1.5977 -1.7162 1.3003 36 1 1.7602 -0.1532 2.1364 37 1 4.5816 0.9724 0.7354 38 1 3.5303 1.0549 2.2129 39 1 4.9859 1.0461 4.0318 40 1 7.7487 -0.2869 3.3778 41 1 7.4415 0.9961 4.6669 42 1 5.8010 -0.5569 5.8208 43 1 6.1078 -1.8395 4.5317 44 1 5.3721 -3.0181 1.5950 45 1 5.1557 -4.5666 3.5924 46 1 3.9595 -3.3973 4.3693 47 1 2.4059 -3.6652 2.3816 48 1 3.6015 -4.8345 1.6042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449539988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = 69.728817 kcal Electronic energy + Delta-G solvation = -22862.826992 eV Core-core repulsion = 19919.898508 eV Total energy + Delta-G solvation = -2942.928484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60352 -37.14584 -36.61742 -35.37216 -32.25605 -29.26096 -27.08041 -26.86865 -25.63160 -24.57186 -22.76899 -22.53837 -22.07669 -21.30081 -20.18616 -19.46155 -17.77982 -16.26637 -15.99632 -15.56230 -15.01756 -14.68134 -14.36441 -14.20719 -13.67414 -13.45725 -13.00630 -12.73191 -12.48820 -12.14327 -11.91280 -11.69522 -11.57783 -11.41936 -11.33389 -11.18591 -10.95745 -10.91581 -10.74685 -10.65861 -10.43237 -10.33121 -10.26646 -10.16473 -10.12737 -9.69459 -9.48368 -9.38763 -8.92703 -8.65537 -8.30951 -8.13358 -5.83614 -3.83335 3.37704 3.45511 3.48537 3.67611 3.85614 4.41812 4.55200 4.57377 4.72720 4.89095 4.96399 5.06367 5.17703 5.26998 5.28812 5.43450 5.50053 5.51937 5.57875 5.60296 5.68281 5.73017 5.74777 5.85078 5.87531 6.00603 6.05490 6.06805 6.07819 6.11817 6.22219 6.24691 6.30903 6.38769 6.42290 6.47735 6.54164 6.76529 6.79415 6.90834 7.12923 7.25753 7.38957 7.65366 7.91626 8.12013 8.27761 8.63181 9.24572 9.78301 11.27439 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.020370 B = 0.004601 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.246940 B = 6084.267903 C = 6372.364612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 C -0.130 4.130 4 C 0.047 3.953 5 C -0.508 4.508 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.881 3.119 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.037 3.963 14 N -0.441 5.441 15 C 0.009 3.991 16 C -0.082 4.082 17 H 0.101 0.899 18 C -0.140 4.140 19 C -0.179 4.179 20 C -0.178 4.178 21 C 0.064 3.936 22 H 0.070 0.930 23 C -0.122 4.122 24 C -0.185 4.185 25 C -0.171 4.171 26 H 0.026 0.974 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.033 0.967 33 H 0.008 0.992 34 H 0.256 0.744 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 0.668 17.528 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C -0.187 4.187 4 C 0.009 3.991 5 C -0.547 4.547 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.710 3.290 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.213 1.213 13 C -0.091 4.091 14 N -0.162 5.162 15 C -0.120 4.120 16 C -0.101 4.101 17 H 0.119 0.881 18 C -0.158 4.158 19 C -0.216 4.216 20 C -0.215 4.215 21 C -0.046 4.046 22 H 0.088 0.912 23 C -0.140 4.140 24 C -0.223 4.223 25 C -0.208 4.208 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.027 0.973 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.124 0.876 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.422 0.257 16.717 17.576 hybrid contribution -0.738 0.754 -0.218 1.077 sum 4.684 1.011 16.499 17.181 Atomic orbital electron populations 1.21732 0.95955 1.01083 0.99581 1.20579 0.94119 0.95081 0.95976 1.21940 1.01606 0.96355 0.98824 1.19004 0.97284 0.94108 0.88656 1.21396 1.30393 1.11758 0.91141 0.92789 1.24980 0.95556 0.95141 0.98771 1.69995 1.37385 1.23231 1.22804 0.86712 0.78577 0.79752 0.83981 1.19957 1.21267 1.21305 1.22760 0.88842 1.00150 0.97342 1.68966 1.07148 1.09515 1.30527 1.23915 0.95541 0.93911 0.98609 1.22459 0.97276 0.96429 0.93891 0.88072 1.22241 0.96933 1.01063 0.95600 1.22969 0.92570 1.02225 1.03882 1.22931 1.04225 0.97416 0.96894 1.22948 0.95727 0.92510 0.93390 0.91217 1.22069 1.01069 0.90421 1.00484 1.22960 1.03271 1.03055 0.92969 1.22824 0.96183 1.01045 1.00780 0.95512 0.91906 0.93589 0.92378 0.92534 0.95845 0.94875 0.97342 0.93441 0.91529 0.95868 0.89338 0.91814 0.88077 0.88796 0.89253 0.89373 0.88349 0.87625 0.89176 0.89297 0.89190 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.12 37.16 0.30 -2.13 16 2 C -0.06 -1.16 0.61 -154.51 -0.09 -1.26 16 3 C -0.13 -2.49 6.84 37.16 0.25 -2.23 16 4 C 0.05 1.20 3.81 -27.88 -0.11 1.09 16 5 C -0.51 -14.21 7.79 -34.44 -0.27 -14.48 16 6 H 0.05 1.48 5.72 -52.49 -0.30 1.18 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 9 Si 0.88 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C 0.04 0.66 3.92 -3.82 -0.01 0.65 16 14 N -0.44 -7.49 5.16 -236.44 -1.22 -8.71 16 15 C 0.01 0.13 5.03 -7.54 -0.04 0.09 16 16 C -0.08 -1.04 3.74 -90.08 -0.34 -1.37 16 17 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 18 C -0.14 -1.47 5.59 -90.62 -0.51 -1.98 16 19 C -0.18 -1.68 10.23 -26.73 -0.27 -1.95 16 20 C -0.18 -1.66 10.07 -26.73 -0.27 -1.93 16 21 C 0.06 0.87 2.59 -71.42 -0.19 0.69 16 22 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 23 C -0.12 -1.63 5.70 -90.62 -0.52 -2.15 16 24 C -0.18 -2.03 9.95 -26.69 -0.27 -2.30 16 25 C -0.17 -2.27 10.25 -26.69 -0.27 -2.54 16 26 H 0.03 0.44 8.14 -51.92 -0.42 0.01 16 27 H 0.06 1.29 6.78 -51.93 -0.35 0.94 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.12 5.42 -51.93 -0.28 0.84 16 30 H 0.06 1.15 6.90 -51.93 -0.36 0.80 16 31 H 0.02 0.38 7.88 -51.93 -0.41 -0.03 16 32 H 0.03 0.93 7.46 -51.93 -0.39 0.54 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 36 H 0.02 0.37 7.54 -51.93 -0.39 -0.02 16 37 H 0.09 1.41 6.80 -51.93 -0.35 1.05 16 38 H 0.06 0.88 7.07 -51.93 -0.37 0.52 16 39 H 0.10 1.04 7.99 -51.93 -0.42 0.63 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.95 7.85 -51.93 -0.41 0.54 16 44 H 0.11 1.50 8.13 -51.93 -0.42 1.07 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.24 8.03 -51.93 -0.42 0.82 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -29.75 368.08 -11.69 -41.44 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -9.04 Total: 1.62 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -2.69 Total: -30.28 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.48 Total: -35.32 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.75 -11.69 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449539988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.170 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds