Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.20841 * 2 1 4 4 C 1.54596 * 110.35260 * 121.85468 * 2 1 3 5 5 C 1.54529 * 101.67881 * 144.67725 * 4 2 1 6 6 H 1.09000 * 110.48179 * 93.73428 * 5 4 2 7 7 N 1.46905 * 110.47852 * 216.22421 * 5 4 2 8 8 C 1.46902 * 110.99800 * 203.18221 * 7 5 4 9 9 C 1.53006 * 109.46626 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47164 * 300.00172 * 9 8 7 11 11 C 1.52997 * 109.47127 * 60.00335 * 9 8 7 12 12 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 13 13 C 1.50706 * 109.46957 * 180.02562 * 12 9 8 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00340 * 180.02562 * 13 12 9 16 16 N 1.31514 * 120.00347 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99775 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46867 * 90.00546 * 17 15 13 19 19 H 1.48501 * 109.47216 * 210.00404 * 17 15 13 20 20 H 1.48499 * 109.47135 * 330.00745 * 17 15 13 21 21 C 1.51575 * 104.36278 * 334.98194 * 5 4 2 22 22 N 1.30897 * 141.44749 * 196.47995 * 21 5 4 23 23 C 1.34007 * 109.30479 * 179.80817 * 22 21 5 24 24 C 1.34561 * 108.02525 * 0.09303 * 23 22 21 25 25 N 1.34813 * 109.94205 * 16.47480 * 21 5 4 26 26 H 1.08999 * 109.47059 * 180.44903 * 1 2 3 27 27 H 1.08992 * 109.47053 * 300.45012 * 1 2 3 28 28 H 1.09006 * 109.46772 * 60.44886 * 1 2 3 29 29 H 1.09005 * 110.94080 * 26.61983 * 4 2 1 30 30 H 1.08997 * 111.07960 * 262.80033 * 4 2 1 31 31 H 1.00898 * 110.99743 * 79.23271 * 7 5 4 32 32 H 1.09000 * 109.47263 * 60.00269 * 8 7 5 33 33 H 1.09001 * 109.47582 * 299.99548 * 8 7 5 34 34 H 1.09001 * 109.47375 * 59.99966 * 10 9 8 35 35 H 1.09002 * 109.46777 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47140 * 299.99948 * 10 9 8 37 37 H 1.09004 * 109.47261 * 59.99697 * 11 9 8 38 38 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 39 39 H 1.09001 * 109.47289 * 299.99953 * 11 9 8 40 40 H 1.08993 * 109.47839 * 299.99931 * 12 9 8 41 41 H 1.09000 * 109.47160 * 60.00369 * 12 9 8 42 42 H 0.96991 * 119.99882 * 179.97438 * 16 15 13 43 43 H 1.08002 * 125.98691 * 180.02562 * 23 22 21 44 44 H 1.08003 * 126.57963 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0677 -0.7650 1.2311 5 6 3.3341 -1.4363 0.6537 6 1 4.2114 -0.8153 0.8351 7 7 3.5207 -2.7708 1.2389 8 6 4.9260 -3.1904 1.1555 9 6 5.0805 -4.5813 1.7741 10 6 4.6473 -4.5380 3.2408 11 6 4.2045 -5.5782 1.0128 12 6 6.5440 -5.0186 1.6866 13 6 6.6961 -6.3888 2.2953 14 1 5.8349 -6.8970 2.7034 15 6 7.9346 -6.9936 2.3313 16 7 8.0672 -8.1896 2.8621 17 14 9.4240 -6.1149 1.6249 18 1 10.0670 -5.2994 2.6863 19 1 10.3940 -7.1169 1.1146 20 1 8.9950 -5.2299 0.5123 21 6 3.0585 -1.5431 -0.8329 22 7 3.4751 -2.1601 -1.9096 23 6 2.7392 -1.7669 -2.9582 24 6 1.8344 -0.8726 -2.5201 25 7 2.0385 -0.7290 -1.1711 26 1 -0.3633 -1.0276 0.0081 27 1 -0.3633 0.5208 0.8859 28 1 -0.3633 0.5069 -0.8941 29 1 1.3499 -1.5123 1.5695 30 1 2.3236 -0.0785 2.0382 31 1 2.9147 -3.4467 0.7985 32 1 5.5501 -2.4804 1.6982 33 1 5.2347 -3.2208 0.1105 34 1 3.6046 -4.2266 3.3028 35 1 4.7578 -5.5288 3.6816 36 1 5.2714 -3.8278 3.7832 37 1 4.5130 -5.6090 -0.0322 38 1 4.3148 -6.5691 1.4532 39 1 3.1617 -5.2668 1.0746 40 1 6.8522 -5.0495 0.6416 41 1 7.1685 -4.3085 2.2287 42 1 8.9384 -8.6152 2.8871 43 1 2.8533 -2.1073 -3.9768 44 1 1.0903 -0.3650 -3.1161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449569410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = 62.251632 kcal Electronic energy + Delta-G solvation = -22095.534550 eV Core-core repulsion = 19048.741487 eV Total energy + Delta-G solvation = -3046.793063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.57643 -37.97753 -36.84067 -34.27371 -32.17792 -30.70061 -30.10320 -28.17443 -27.44018 -26.28804 -25.30251 -23.79002 -22.19199 -21.80852 -20.64877 -19.89106 -17.92092 -17.32557 -16.69621 -15.86905 -15.18084 -14.80149 -14.50239 -14.24236 -14.00514 -13.97743 -13.74623 -13.23145 -13.14061 -12.76932 -12.52027 -12.49146 -12.37249 -12.14817 -11.82492 -11.59492 -11.27195 -11.00784 -10.86420 -10.79890 -10.41979 -10.27302 -9.90582 -9.70830 -9.68307 -9.60857 -9.21474 -8.82755 -8.63526 -8.42257 -8.16064 -5.92968 -3.88547 1.94588 2.55587 3.10695 3.38687 3.46222 3.51875 3.67807 4.08411 4.21102 4.43588 4.55789 4.60944 4.68388 4.92388 5.04211 5.14479 5.20609 5.40703 5.42434 5.49809 5.56710 5.58829 5.66458 5.70960 5.82948 5.98015 6.21744 6.30990 6.35942 6.51929 6.66705 6.77394 6.79720 6.86937 6.94012 7.11176 7.20103 7.23807 7.31925 7.41661 7.49890 7.62285 7.93270 8.10939 8.67408 9.13172 9.70691 11.20230 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027967 B = 0.004012 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.929214 B = 6976.813589 C = 7422.169364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 H 0.095 0.905 4 C -0.114 4.114 5 C 0.165 3.835 6 H 0.104 0.896 7 N -0.663 5.663 8 C 0.064 3.936 9 C -0.047 4.047 10 C -0.118 4.118 11 C -0.129 4.129 12 C -0.004 4.004 13 C -0.505 4.505 14 H 0.078 0.922 15 C 0.064 3.936 16 N -0.907 5.907 17 Si 0.874 3.126 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.266 1.266 21 C 0.158 3.842 22 N -0.472 5.472 23 C -0.023 4.023 24 C -0.043 4.043 25 N -0.475 5.475 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.348 0.652 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.014 0.986 41 H 0.010 0.990 42 H 0.261 0.739 43 H 0.172 0.828 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 19.386 -6.197 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.113 0.887 4 C -0.152 4.152 5 C 0.052 3.948 6 H 0.121 0.879 7 N -0.294 5.294 8 C -0.065 4.065 9 C -0.047 4.047 10 C -0.175 4.175 11 C -0.186 4.186 12 C -0.042 4.042 13 C -0.543 4.543 14 H 0.095 0.905 15 C -0.136 4.136 16 N -0.547 5.547 17 Si 0.702 3.298 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.190 1.190 21 C -0.107 4.107 22 N -0.191 5.191 23 C -0.172 4.172 24 C -0.175 4.175 25 N -0.159 5.159 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.168 0.832 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.032 0.968 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.189 0.811 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.581 19.066 -5.542 25.239 hybrid contribution 0.316 0.833 -1.631 1.859 sum -15.265 19.899 -7.174 26.085 Atomic orbital electron populations 1.22080 0.92957 1.03481 1.03125 1.22177 0.95909 0.96369 0.83089 0.88748 1.22924 0.96940 0.99761 0.95619 1.20866 0.98532 0.94421 0.81003 0.87860 1.60798 1.08914 1.01931 1.57737 1.22240 0.86916 0.97796 0.99514 1.20398 0.97778 0.91344 0.95212 1.21629 0.99019 1.01623 0.95270 1.21758 0.96630 1.00588 0.99631 1.19622 0.90954 0.97061 0.96568 1.21149 0.95506 0.99837 1.37778 0.90454 1.25006 0.98778 0.94736 0.95067 1.69910 1.24005 1.14693 1.46113 0.86860 0.83137 0.79689 0.80094 1.20498 1.21632 1.19024 1.25622 0.91679 0.94973 0.98393 1.69951 1.27236 1.24969 0.96936 1.22357 0.96217 1.00033 0.98614 1.22300 1.06037 1.06679 0.82448 1.46620 1.28565 1.33745 1.07001 0.91414 0.90141 0.92026 0.88560 0.87882 0.83179 0.91657 0.94215 0.93803 0.92159 0.94221 0.93824 0.91316 0.94913 0.96754 0.97206 0.92967 0.81110 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.46 37.16 0.35 -0.55 16 2 C 0.13 0.95 4.13 -66.81 -0.28 0.67 16 3 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.11 -0.90 6.40 -25.09 -0.16 -1.06 16 5 C 0.17 1.94 3.24 -67.63 -0.22 1.72 16 6 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 7 N -0.66 -9.26 5.52 -106.63 -0.59 -9.85 16 8 C 0.06 1.09 4.49 -3.82 -0.02 1.07 16 9 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 10 C -0.12 -2.26 8.07 37.16 0.30 -1.96 16 11 C -0.13 -2.52 7.89 37.16 0.29 -2.22 16 12 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 13 C -0.50 -14.22 8.20 -34.44 -0.28 -14.50 16 14 H 0.08 2.32 5.92 -52.49 -0.31 2.01 16 15 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 17 Si 0.87 22.32 27.47 -169.99 -4.67 17.65 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 21 C 0.16 2.18 7.91 -154.86 -1.22 0.95 16 22 N -0.47 -7.63 11.26 -10.56 -0.12 -7.75 16 23 C -0.02 -0.31 11.86 -17.90 -0.21 -0.52 16 24 C -0.04 -0.46 12.00 -16.46 -0.20 -0.66 16 25 N -0.47 -5.22 3.27 -105.15 -0.34 -5.56 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.78 7.87 -51.93 -0.41 0.37 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.35 5.15 6.51 -39.29 -0.26 4.89 16 32 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 35 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.49 6.61 -51.93 -0.34 1.15 16 39 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 40 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 41 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -33.07 343.00 -9.09 -42.16 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.39 Total: 2.16 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.92 Total: -16.47 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.28 Total: -50.66 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.07 -9.09 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449569410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.409 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds