Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.20841 * 2 1 4 4 C 1.54596 * 110.35260 * 121.85468 * 2 1 3 5 5 C 1.54529 * 101.67881 * 144.67725 * 4 2 1 6 6 H 1.09000 * 110.48179 * 93.73428 * 5 4 2 7 7 N 1.46905 * 110.47852 * 216.22421 * 5 4 2 8 8 C 1.46902 * 110.99800 * 203.18221 * 7 5 4 9 9 C 1.53006 * 109.46626 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47164 * 300.00172 * 9 8 7 11 11 C 1.52997 * 109.47127 * 60.00335 * 9 8 7 12 12 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 13 13 C 1.50706 * 109.46957 * 180.02562 * 12 9 8 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 9 15 15 C 1.37876 * 120.00340 * 180.02562 * 13 12 9 16 16 N 1.31514 * 120.00347 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99775 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46867 * 90.00546 * 17 15 13 19 19 H 1.48501 * 109.47216 * 210.00404 * 17 15 13 20 20 H 1.48499 * 109.47135 * 330.00745 * 17 15 13 21 21 C 1.51575 * 104.36278 * 334.98194 * 5 4 2 22 22 N 1.30897 * 141.44749 * 196.47995 * 21 5 4 23 23 C 1.34007 * 109.30479 * 179.80817 * 22 21 5 24 24 C 1.34561 * 108.02525 * 0.09303 * 23 22 21 25 25 N 1.34813 * 109.94205 * 16.47480 * 21 5 4 26 26 H 1.08999 * 109.47059 * 180.44903 * 1 2 3 27 27 H 1.08992 * 109.47053 * 300.45012 * 1 2 3 28 28 H 1.09006 * 109.46772 * 60.44886 * 1 2 3 29 29 H 1.09005 * 110.94080 * 26.61983 * 4 2 1 30 30 H 1.08997 * 111.07960 * 262.80033 * 4 2 1 31 31 H 1.00898 * 110.99743 * 79.23271 * 7 5 4 32 32 H 1.09000 * 109.47263 * 60.00269 * 8 7 5 33 33 H 1.09001 * 109.47582 * 299.99548 * 8 7 5 34 34 H 1.09001 * 109.47375 * 59.99966 * 10 9 8 35 35 H 1.09002 * 109.46777 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47140 * 299.99948 * 10 9 8 37 37 H 1.09004 * 109.47261 * 59.99697 * 11 9 8 38 38 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 39 39 H 1.09001 * 109.47289 * 299.99953 * 11 9 8 40 40 H 1.08993 * 109.47839 * 299.99931 * 12 9 8 41 41 H 1.09000 * 109.47160 * 60.00369 * 12 9 8 42 42 H 0.96991 * 119.99882 * 179.97438 * 16 15 13 43 43 H 1.08002 * 125.98691 * 180.02562 * 23 22 21 44 44 H 1.08003 * 126.57963 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0677 -0.7650 1.2311 5 6 3.3341 -1.4363 0.6537 6 1 4.2114 -0.8153 0.8351 7 7 3.5207 -2.7708 1.2389 8 6 4.9260 -3.1904 1.1555 9 6 5.0805 -4.5813 1.7741 10 6 4.6473 -4.5380 3.2408 11 6 4.2045 -5.5782 1.0128 12 6 6.5440 -5.0186 1.6866 13 6 6.6961 -6.3888 2.2953 14 1 5.8349 -6.8970 2.7034 15 6 7.9346 -6.9936 2.3313 16 7 8.0672 -8.1896 2.8621 17 14 9.4240 -6.1149 1.6249 18 1 10.0670 -5.2994 2.6863 19 1 10.3940 -7.1169 1.1146 20 1 8.9950 -5.2299 0.5123 21 6 3.0585 -1.5431 -0.8329 22 7 3.4751 -2.1601 -1.9096 23 6 2.7392 -1.7669 -2.9582 24 6 1.8344 -0.8726 -2.5201 25 7 2.0385 -0.7290 -1.1711 26 1 -0.3633 -1.0276 0.0081 27 1 -0.3633 0.5208 0.8859 28 1 -0.3633 0.5069 -0.8941 29 1 1.3499 -1.5123 1.5695 30 1 2.3236 -0.0785 2.0382 31 1 2.9147 -3.4467 0.7985 32 1 5.5501 -2.4804 1.6982 33 1 5.2347 -3.2208 0.1105 34 1 3.6046 -4.2266 3.3028 35 1 4.7578 -5.5288 3.6816 36 1 5.2714 -3.8278 3.7832 37 1 4.5130 -5.6090 -0.0322 38 1 4.3148 -6.5691 1.4532 39 1 3.1617 -5.2668 1.0746 40 1 6.8522 -5.0495 0.6416 41 1 7.1685 -4.3085 2.2287 42 1 8.9384 -8.6152 2.8871 43 1 2.8533 -2.1073 -3.9768 44 1 1.0903 -0.3650 -3.1161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449569410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = 41.273544 kcal Electronic energy + Delta-G solvation = -22096.444228 eV Core-core repulsion = 19048.741487 eV Total energy + Delta-G solvation = -3047.702741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.42936 -39.32081 -37.84401 -35.54204 -34.21033 -31.58241 -31.05694 -29.55226 -28.81099 -27.91252 -26.59958 -24.86386 -23.59690 -22.94843 -21.45224 -20.77590 -19.48396 -18.86083 -18.16805 -16.81558 -16.39755 -16.16380 -15.75221 -15.41322 -15.23624 -15.07175 -14.88642 -14.62145 -14.31543 -14.13128 -13.76449 -13.64062 -13.41102 -13.15276 -13.01613 -12.78495 -12.73926 -12.45300 -12.26477 -12.23674 -12.06821 -11.94458 -11.68796 -11.36622 -10.98467 -10.86866 -10.79085 -10.68876 -10.54080 -9.68923 -9.19348 -8.21079 -6.20785 1.08784 1.35011 1.37743 1.49245 1.84742 2.14636 2.40234 2.84731 3.13933 3.24563 3.49604 3.79005 3.88901 4.09631 4.11938 4.21435 4.26342 4.29302 4.37629 4.54278 4.67874 4.73169 4.77147 4.78238 4.85151 4.92719 5.00320 5.04901 5.05856 5.12426 5.19443 5.19823 5.36907 5.39529 5.47020 5.54947 5.62037 5.77909 5.82989 5.89734 5.99904 6.14914 6.32343 6.42981 6.85945 7.20165 7.41606 8.95149 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027967 B = 0.004012 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.929214 B = 6976.813589 C = 7422.169364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.123 3.877 3 H 0.115 0.885 4 C -0.102 4.102 5 C 0.161 3.839 6 H 0.105 0.895 7 N -0.654 5.654 8 C 0.080 3.920 9 C -0.046 4.046 10 C -0.107 4.107 11 C -0.120 4.120 12 C -0.002 4.002 13 C -0.502 4.502 14 H 0.046 0.954 15 C 0.003 3.997 16 N -0.954 5.954 17 Si 0.938 3.062 18 H -0.266 1.266 19 H -0.288 1.288 20 H -0.256 1.256 21 C 0.134 3.866 22 N -0.526 5.526 23 C -0.057 4.057 24 C -0.027 4.027 25 N -0.470 5.470 26 H 0.053 0.947 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.343 0.657 32 H 0.074 0.926 33 H 0.018 0.982 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.044 0.956 37 H 0.032 0.968 38 H 0.038 0.962 39 H 0.061 0.939 40 H 0.004 0.996 41 H 0.015 0.985 42 H 0.262 0.738 43 H 0.182 0.818 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.695 22.834 -6.286 29.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.023 3.977 3 H 0.133 0.867 4 C -0.141 4.141 5 C 0.048 3.952 6 H 0.123 0.877 7 N -0.283 5.283 8 C -0.049 4.049 9 C -0.047 4.047 10 C -0.165 4.165 11 C -0.177 4.177 12 C -0.040 4.040 13 C -0.540 4.540 14 H 0.065 0.935 15 C -0.193 4.193 16 N -0.596 5.596 17 Si 0.763 3.237 18 H -0.191 1.191 19 H -0.214 1.214 20 H -0.180 1.180 21 C -0.131 4.131 22 N -0.246 5.246 23 C -0.205 4.205 24 C -0.160 4.160 25 N -0.154 5.154 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.150 0.850 31 H 0.162 0.838 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.022 0.978 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.199 0.801 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -17.072 22.548 -5.619 28.835 hybrid contribution 0.670 -0.248 -1.625 1.775 sum -16.401 22.300 -7.244 28.614 Atomic orbital electron populations 1.22061 0.91326 1.03049 1.04595 1.22504 0.97156 0.96759 0.81331 0.86674 1.22968 0.94729 0.99959 0.96418 1.21108 1.00693 0.93049 0.80361 0.87688 1.60787 1.06611 1.02987 1.57956 1.21908 0.89197 0.95923 0.97864 1.20326 0.94942 0.93177 0.96215 1.21510 1.00803 0.99908 0.94247 1.21645 0.98471 0.99079 0.98517 1.19580 0.94239 0.94896 0.95297 1.21421 0.94455 1.01370 1.36768 0.93549 1.25878 1.02143 0.95495 0.95766 1.70054 1.24868 1.16520 1.48122 0.85834 0.79325 0.78713 0.79829 1.19118 1.21369 1.18015 1.25809 0.92775 0.95829 0.98725 1.69842 1.29239 1.26919 0.98578 1.22726 0.97294 1.01554 0.98894 1.22792 1.05333 1.05222 0.82630 1.46907 1.27636 1.33126 1.07709 0.92763 0.87786 0.91461 0.88581 0.85029 0.83751 0.90799 0.96327 0.91112 0.95332 0.93717 0.94910 0.94278 0.92017 0.97759 0.96708 0.92876 0.80111 0.78015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.46 71.98 0.68 -0.46 16 2 C 0.12 1.38 4.13 45.44 0.19 1.56 16 3 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.10 -1.24 6.40 31.66 0.20 -1.04 16 5 C 0.16 3.42 3.24 44.97 0.15 3.56 16 6 H 0.11 2.18 7.85 -2.39 -0.02 2.16 16 7 N -0.65 -17.07 5.52 -491.27 -2.71 -19.78 16 8 C 0.08 2.66 4.49 86.31 0.39 3.04 16 9 C -0.05 -1.83 0.60 -52.18 -0.03 -1.86 16 10 C -0.11 -4.03 8.07 71.98 0.58 -3.45 16 11 C -0.12 -4.76 7.89 71.98 0.57 -4.19 16 12 C 0.00 -0.11 3.11 29.85 0.09 -0.02 16 13 C -0.50 -29.13 8.20 25.60 0.21 -28.92 16 14 H 0.05 2.92 5.92 -2.91 -0.02 2.91 16 15 C 0.00 0.17 5.47 84.65 0.46 0.64 16 16 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 17 Si 0.94 46.40 27.47 68.60 1.88 48.29 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 20 H -0.26 -12.16 6.54 99.48 0.65 -11.51 16 21 C 0.13 3.51 7.91 138.36 1.09 4.61 16 22 N -0.53 -17.00 11.26 -187.33 -2.11 -19.11 16 23 C -0.06 -1.45 11.86 83.52 0.99 -0.46 16 24 C -0.03 -0.52 12.00 83.01 1.00 0.48 16 25 N -0.47 -9.16 3.27 -486.57 -1.59 -10.76 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.07 0.45 8.14 -2.38 -0.02 0.44 16 29 H 0.10 1.21 7.87 -2.38 -0.02 1.19 16 30 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.34 9.65 6.51 -89.70 -0.58 9.07 16 32 H 0.07 2.32 8.08 -2.39 -0.02 2.30 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 2.25 7.60 -2.39 -0.02 2.24 16 35 H 0.03 1.23 6.62 -2.39 -0.02 1.21 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.04 1.76 6.61 -2.39 -0.02 1.74 16 39 H 0.06 2.06 6.57 -2.39 -0.02 2.04 16 40 H 0.00 0.21 7.20 -2.39 -0.02 0.19 16 41 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 42 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 43 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -74.68 343.00 2.67 -72.01 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.33 Total: 16.75 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 6.57 Total: -26.50 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -6.11 Total: -110.54 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.29 kcal Total: -74.68 2.67 -72.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449569410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.280 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds