Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.27537 * 2 1 4 4 C 1.54388 * 110.23108 * 121.94847 * 2 1 3 5 5 C 1.54537 * 101.77225 * 144.72957 * 4 2 1 6 6 H 1.09000 * 110.47520 * 216.00436 * 5 4 2 7 7 N 1.46895 * 110.48065 * 93.51594 * 5 4 2 8 8 C 1.46896 * 111.00306 * 156.81760 * 7 5 4 9 9 C 1.53006 * 109.47501 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.46943 * 60.00213 * 9 8 7 11 11 C 1.52997 * 109.46974 * 300.00278 * 9 8 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 9 8 7 13 13 C 1.50706 * 109.46573 * 180.02562 * 12 9 8 14 14 H 1.07995 * 120.00167 * 359.72054 * 13 12 9 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 9 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 C 1.51563 * 104.35706 * 334.76131 * 5 4 2 22 22 N 1.30702 * 141.69188 * 196.47422 * 21 5 4 23 23 C 1.34005 * 109.41901 * 179.88398 * 22 21 5 24 24 C 1.34568 * 108.03073 * 0.14084 * 23 22 21 25 25 N 1.35134 * 109.76731 * 16.62502 * 21 5 4 26 26 H 1.08996 * 109.47615 * 298.05272 * 1 2 3 27 27 H 1.09002 * 109.46957 * 58.05866 * 1 2 3 28 28 H 1.09005 * 109.47400 * 178.05179 * 1 2 3 29 29 H 1.09002 * 110.97297 * 26.60431 * 4 2 1 30 30 H 1.09001 * 110.96925 * 262.84412 * 4 2 1 31 31 H 1.00907 * 111.00219 * 280.77331 * 7 5 4 32 32 H 1.09000 * 109.47017 * 60.00110 * 8 7 5 33 33 H 1.08996 * 109.47227 * 300.00430 * 8 7 5 34 34 H 1.09002 * 109.47153 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.46832 * 300.00025 * 10 9 8 36 36 H 1.08992 * 109.47303 * 59.99728 * 10 9 8 37 37 H 1.09000 * 109.47140 * 299.99606 * 11 9 8 38 38 H 1.09001 * 109.47375 * 59.99624 * 11 9 8 39 39 H 1.09002 * 109.47497 * 179.97438 * 11 9 8 40 40 H 1.09000 * 109.47486 * 60.00167 * 12 9 8 41 41 H 1.09001 * 109.47362 * 299.99445 * 12 9 8 42 42 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 43 43 H 1.08000 * 125.98647 * 180.10579 * 23 22 21 44 44 H 1.07995 * 126.58075 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0639 -0.7666 1.2292 5 6 3.3318 -1.4383 0.6555 6 1 3.4700 -2.4275 1.0921 7 7 4.5131 -0.6003 0.9006 8 6 5.7423 -1.4044 0.8815 9 6 6.9484 -0.4988 1.1392 10 6 6.7993 0.1724 2.5060 11 6 7.0232 0.5730 0.0500 12 6 8.2286 -1.3364 1.1187 13 6 9.4164 -0.4444 1.3732 14 1 9.2729 0.6146 1.5289 15 6 10.6867 -0.9797 1.4018 16 7 10.8619 -2.2684 1.2067 17 14 12.1589 0.1258 1.7179 18 1 12.0137 0.7763 3.0448 19 1 13.4016 -0.6871 1.6979 20 1 12.2321 1.1670 0.6616 21 6 3.0590 -1.5483 -0.8313 22 7 3.4734 -2.1637 -1.9073 23 6 2.7387 -1.7700 -2.9566 24 6 1.8348 -0.8741 -2.5195 25 7 2.0385 -0.7299 -1.1704 26 1 -0.3634 0.4833 0.9069 27 1 -0.3633 0.5437 -0.8721 28 1 -0.3634 -1.0271 -0.0349 29 1 1.3449 -1.5135 1.5657 30 1 2.3177 -0.0801 2.0370 31 1 4.5650 0.1554 0.2339 32 1 5.8488 -1.8823 -0.0923 33 1 5.6887 -2.1683 1.6571 34 1 7.6582 0.8179 2.6894 35 1 5.8872 0.7691 2.5201 36 1 6.7459 -0.5911 3.2819 37 1 7.1294 0.0948 -0.9237 38 1 6.1111 1.1698 0.0641 39 1 7.8821 1.2185 0.2338 40 1 8.3346 -1.8143 0.1448 41 1 8.1755 -2.1002 1.8945 42 1 11.7556 -2.6448 1.2265 43 1 2.8524 -2.1116 -3.9748 44 1 1.0923 -0.3653 -3.1163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449569411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = 38.397711 kcal Electronic energy + Delta-G solvation = -22112.526310 eV Core-core repulsion = 19064.698864 eV Total energy + Delta-G solvation = -3047.827446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.44666 -39.34317 -37.86688 -35.46334 -34.17000 -31.64112 -30.95900 -29.15224 -28.67089 -27.91046 -26.61757 -25.13822 -24.12726 -22.79570 -21.40832 -20.91129 -19.53476 -18.33380 -18.04177 -16.85845 -16.58774 -16.21861 -15.69257 -15.61993 -15.18562 -15.02006 -14.84464 -14.52435 -14.35423 -13.91773 -13.65234 -13.57729 -13.52541 -13.07819 -12.91047 -12.75109 -12.72374 -12.47713 -12.32508 -12.26168 -12.09533 -11.99125 -11.82306 -11.41274 -10.89741 -10.86948 -10.73399 -10.55723 -10.49561 -9.78686 -9.23466 -8.12680 -6.20637 1.06308 1.41118 1.44114 1.51330 1.84854 2.12136 2.44597 2.90332 3.14378 3.20816 3.52654 3.68078 3.91037 4.09634 4.13155 4.21005 4.29311 4.34070 4.42905 4.57367 4.67198 4.70333 4.76310 4.78717 4.81021 4.93069 4.99170 5.05491 5.08182 5.18016 5.20376 5.22221 5.38544 5.50498 5.53345 5.60541 5.64018 5.85795 5.88213 5.90940 5.93696 6.14676 6.29137 6.35656 6.94448 7.19346 7.46741 8.99765 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030508 B = 0.003806 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.571770 B = 7354.275770 C = 7755.650187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 H 0.107 0.893 4 C -0.102 4.102 5 C 0.157 3.843 6 H 0.095 0.905 7 N -0.645 5.645 8 C 0.083 3.917 9 C -0.053 4.053 10 C -0.105 4.105 11 C -0.119 4.119 12 C 0.041 3.959 13 C -0.515 4.515 14 H 0.068 0.932 15 C -0.006 4.006 16 N -0.939 5.939 17 Si 0.959 3.041 18 H -0.264 1.264 19 H -0.288 1.288 20 H -0.269 1.269 21 C 0.133 3.867 22 N -0.528 5.528 23 C -0.059 4.059 24 C -0.022 4.022 25 N -0.469 5.469 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.341 0.659 32 H 0.006 0.994 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.050 0.950 40 H -0.025 1.025 41 H -0.014 1.014 42 H 0.260 0.740 43 H 0.183 0.817 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.945 7.802 -1.286 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 H 0.125 0.875 4 C -0.140 4.140 5 C 0.044 3.956 6 H 0.113 0.887 7 N -0.275 5.275 8 C -0.047 4.047 9 C -0.053 4.053 10 C -0.163 4.163 11 C -0.176 4.176 12 C 0.003 3.997 13 C -0.553 4.553 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.581 5.581 17 Si 0.784 3.216 18 H -0.189 1.189 19 H -0.214 1.214 20 H -0.194 1.194 21 C -0.132 4.132 22 N -0.248 5.248 23 C -0.207 4.207 24 C -0.155 4.155 25 N -0.153 5.153 26 H 0.122 0.878 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.025 0.975 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.069 0.931 40 H -0.007 1.007 41 H 0.005 0.995 42 H 0.068 0.932 43 H 0.200 0.800 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -24.435 7.273 -0.615 25.502 hybrid contribution 0.953 -0.005 -1.504 1.781 sum -23.482 7.268 -2.119 24.673 Atomic orbital electron populations 1.22051 0.90904 1.03158 1.04712 1.22443 0.97307 0.96539 0.81555 0.87476 1.22927 0.93531 1.00791 0.96749 1.20970 0.92885 0.98815 0.82935 0.88683 1.60932 1.00841 1.11379 1.54342 1.21859 0.89138 0.95299 0.98380 1.20476 0.93029 0.95237 0.96580 1.21500 1.00799 0.99496 0.94472 1.21653 1.01039 0.98178 0.96738 1.18990 0.92745 0.94303 0.93662 1.21590 0.91793 0.95053 1.46898 0.91355 1.25968 1.02386 0.96279 0.95612 1.70122 1.22749 1.13294 1.51895 0.85595 0.78164 0.78639 0.79232 1.18917 1.21410 1.19396 1.25678 0.92938 0.95862 0.98688 1.69717 1.29084 1.27108 0.98916 1.22739 0.97171 1.01879 0.98867 1.22823 1.05224 1.04849 0.82634 1.47039 1.27582 1.32988 1.07696 0.87775 0.91499 0.92313 0.87521 0.85177 0.83943 0.97536 0.91680 0.94188 0.90747 0.94558 0.95818 0.91666 0.93051 1.00713 0.99517 0.93173 0.79993 0.77807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.44 71.98 0.68 -0.51 16 2 C 0.12 1.60 4.13 45.36 0.19 1.79 16 3 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.10 -1.37 6.38 31.59 0.20 -1.17 16 5 C 0.16 3.72 3.23 44.97 0.15 3.86 16 6 H 0.10 2.43 7.85 -2.39 -0.02 2.41 16 7 N -0.64 -17.50 5.51 -491.32 -2.71 -20.21 16 8 C 0.08 3.02 4.49 86.31 0.39 3.41 16 9 C -0.05 -2.17 0.60 -52.18 -0.03 -2.20 16 10 C -0.11 -3.89 8.06 71.98 0.58 -3.31 16 11 C -0.12 -4.59 7.89 71.98 0.57 -4.02 16 12 C 0.04 2.20 4.04 29.85 0.12 2.32 16 13 C -0.52 -29.24 7.65 25.60 0.20 -29.04 16 14 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 15 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 16 N -0.94 -59.17 13.29 21.45 0.28 -58.89 16 17 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 18 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 C 0.13 3.80 7.93 138.32 1.10 4.90 16 22 N -0.53 -18.33 11.24 -187.23 -2.10 -20.43 16 23 C -0.06 -1.60 11.86 83.52 0.99 -0.61 16 24 C -0.02 -0.45 12.00 83.01 1.00 0.54 16 25 N -0.47 -9.93 3.28 -486.87 -1.60 -11.53 16 26 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.11 1.10 7.91 -2.39 -0.02 1.08 16 30 H 0.13 1.37 8.08 -2.39 -0.02 1.35 16 31 H 0.34 9.36 6.51 -89.69 -0.58 8.78 16 32 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 2.42 8.08 -2.39 -0.02 2.40 16 34 H 0.04 1.58 6.62 -2.39 -0.02 1.57 16 35 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 2.03 6.57 -2.39 -0.02 2.02 16 39 H 0.05 2.10 6.61 -2.39 -0.02 2.09 16 40 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 41 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 44 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -74.44 346.57 2.87 -71.57 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.39 Total: 16.14 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 6.58 Total: -23.91 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -6.12 Total: -111.05 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -74.44 2.87 -71.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449569411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.967 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds