Wall clock time and date at job start Mon Mar 30 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.35043 * 126.39937 * 264.68826 * 3 2 1 5 5 N 1.30493 * 108.69975 * 179.82731 * 4 3 2 6 6 C 1.34129 * 109.25698 * 0.44443 * 5 4 3 7 7 C 1.34670 * 108.02098 * 359.72531 * 6 5 4 8 8 C 1.50696 * 126.59502 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47249 * 94.95513 * 8 7 6 10 10 C 1.46848 * 111.00154 * 294.21493 * 9 8 7 11 11 C 1.53038 * 109.52494 * 174.15682 * 10 9 8 12 12 C 1.53121 * 109.27674 * 59.17759 * 11 10 9 13 13 C 1.53000 * 109.52084 * 182.44183 * 12 11 10 14 14 C 1.50702 * 109.47182 * 294.68213 * 13 12 11 15 15 H 1.07997 * 119.99601 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99831 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00491 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99730 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47321 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47178 * 120.00104 * 18 16 14 21 21 H 1.48505 * 109.46874 * 239.99697 * 18 16 14 22 22 C 1.53117 * 109.16150 * 302.34495 * 12 11 10 23 23 C 1.46841 * 111.00496 * 169.99906 * 9 8 7 24 24 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 25 25 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 28 28 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 29 29 H 1.08004 * 125.64727 * 359.97438 * 4 3 2 30 30 H 1.07998 * 125.99320 * 179.72384 * 6 5 4 31 31 H 1.08993 * 109.47444 * 214.96074 * 8 7 6 32 32 H 1.09003 * 109.47346 * 334.96054 * 8 7 6 33 33 H 1.09000 * 109.46403 * 294.17164 * 10 9 8 34 34 H 1.09000 * 109.46513 * 54.14304 * 10 9 8 35 35 H 1.09002 * 109.50049 * 299.23836 * 11 10 9 36 36 H 1.08994 * 109.50751 * 179.12202 * 11 10 9 37 37 H 1.08995 * 109.57510 * 62.28337 * 12 11 10 38 38 H 1.09003 * 109.47254 * 54.68327 * 13 12 11 39 39 H 1.09001 * 109.47233 * 174.68510 * 13 12 11 40 40 H 0.96993 * 120.00361 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.50788 * 297.71537 * 22 12 11 42 42 H 1.09005 * 109.53642 * 177.61369 * 22 12 11 43 43 H 1.09000 * 109.46233 * 305.86573 * 23 9 8 44 44 H 1.09010 * 109.45898 * 65.83786 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3803 2.1033 -1.0823 5 7 2.7566 3.2888 -0.6876 6 6 2.6586 3.3621 0.6481 7 6 2.1986 2.1790 1.0977 8 6 1.9327 1.8053 2.5331 9 7 0.5151 2.0329 2.8439 10 6 0.1860 3.4627 2.7829 11 6 -1.3218 3.6488 2.9674 12 6 -1.7412 3.0667 4.3201 13 6 -3.2570 3.1949 4.4840 14 6 -3.6334 4.6526 4.5516 15 1 -2.8680 5.4116 4.4840 16 6 -4.9547 5.0172 4.6999 17 7 -5.8867 4.0930 4.7828 18 14 -5.4213 6.8241 4.7830 19 1 -4.1975 7.6572 4.6678 20 1 -6.3479 7.1479 3.6686 21 1 -6.0896 7.1036 6.0794 22 6 -1.3437 1.5891 4.3763 23 6 0.1647 1.4627 4.1509 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.3594 1.7576 -2.1053 30 1 2.9054 4.2197 1.2565 31 1 2.1737 0.7533 2.6853 32 1 2.5513 2.4182 3.1888 33 1 0.7167 3.9917 3.5744 34 1 0.4855 3.8633 1.8144 35 1 -1.8527 3.1315 2.1682 36 1 -1.5638 4.7111 2.9376 37 1 -1.2408 3.6093 5.1221 38 1 -3.7551 2.7301 3.6332 39 1 -3.5665 2.6968 5.4028 40 1 -6.8163 4.3495 4.8867 41 1 -1.8750 1.0394 3.5994 42 1 -1.6013 1.1792 5.3530 43 1 0.4489 0.4107 4.1762 44 1 0.6954 2.0012 4.9362 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516470480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:12 Heat of formation + Delta-G solvation = 44.537862 kcal Electronic energy + Delta-G solvation = -22170.077705 eV Core-core repulsion = 19122.516516 eV Total energy + Delta-G solvation = -3047.561189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.13366 -38.67890 -35.06734 -34.66976 -32.46151 -30.67046 -30.26525 -29.77052 -27.78280 -25.31520 -23.84432 -23.28113 -22.58535 -21.41397 -20.67578 -19.59863 -18.90589 -17.14686 -16.27351 -15.94814 -15.38503 -14.79790 -14.51697 -14.42793 -14.33501 -13.92081 -13.53363 -13.38362 -13.19664 -12.77167 -12.66636 -12.45273 -12.14898 -11.93654 -11.82023 -11.60351 -11.37391 -11.11336 -10.79620 -10.64592 -10.60922 -10.25828 -9.97015 -9.89122 -9.60161 -9.51079 -9.03635 -8.86483 -8.43078 -8.30892 -8.09072 -5.96303 -3.97516 1.99446 2.75221 3.16668 3.32945 3.40755 3.44738 4.16031 4.47549 4.49093 4.59648 4.68301 4.86500 4.98189 5.07443 5.23120 5.29164 5.39381 5.42672 5.49875 5.56351 5.57160 5.59422 5.75147 5.79972 5.88411 6.00192 6.14091 6.19054 6.25751 6.35986 6.44369 6.56748 6.67131 6.74128 6.98307 7.10636 7.18427 7.20780 7.28639 7.36527 7.71766 7.87860 8.04395 8.08479 8.47909 9.09317 9.66205 11.15092 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.004029 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.724320 B = 6947.728887 C = 7283.892216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -0.445 5.445 4 C 0.175 3.825 5 N -0.495 5.495 6 C -0.026 4.026 7 C -0.004 4.004 8 C 0.127 3.873 9 N -0.532 5.532 10 C 0.055 3.945 11 C -0.097 4.097 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.110 4.110 23 C 0.060 3.940 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.200 0.800 30 H 0.164 0.836 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.258 0.742 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.680 -10.170 -7.542 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 N -0.128 5.128 4 C -0.107 4.107 5 N -0.213 5.213 6 C -0.175 4.175 7 C -0.120 4.120 8 C -0.001 4.001 9 N -0.257 5.257 10 C -0.073 4.073 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.148 4.148 23 C -0.068 4.068 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.217 0.783 30 H 0.181 0.819 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 16.425 -9.953 -8.385 20.956 hybrid contribution -0.254 0.716 1.097 1.335 sum 16.171 -9.237 -7.288 19.999 Atomic orbital electron populations 1.22207 0.93287 1.02948 1.04752 1.21788 0.96495 0.79648 1.03657 1.45426 1.47790 1.12756 1.06836 1.24826 1.03873 0.88552 0.93480 1.70249 1.20873 1.18202 1.11993 1.22025 1.07130 0.97111 0.91270 1.21042 1.08044 0.93084 0.89824 1.20365 0.90183 1.00890 0.88706 1.61968 1.16273 1.16753 1.30714 1.22251 0.98242 0.86422 1.00367 1.21516 0.92065 1.01749 0.98140 1.21238 1.00100 0.92723 0.95948 1.19115 0.88173 0.96710 0.96881 1.21295 0.92224 0.92467 1.49141 0.92653 1.25011 0.96786 0.97108 0.95558 1.69973 1.00537 1.32361 1.50779 0.86608 0.78517 0.85793 0.77533 1.19759 1.21084 1.21125 1.21675 0.93108 0.98925 1.01091 1.22113 0.97857 0.98309 0.88502 0.89271 0.92309 0.91161 0.89466 0.89587 0.78311 0.81889 0.90632 0.92723 0.95374 0.91086 0.92176 0.90961 0.93024 0.96617 0.96825 0.93182 0.91762 0.92124 0.91784 0.95185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.11 0.83 6.66 -4.04 -0.03 0.80 16 3 N -0.45 -4.80 2.75 -113.99 -0.31 -5.11 16 4 C 0.17 2.00 12.56 -90.38 -1.13 0.86 16 5 N -0.50 -7.10 11.25 -14.67 -0.16 -7.26 16 6 C -0.03 -0.36 10.62 -17.81 -0.19 -0.55 16 7 C 0.00 -0.05 5.69 -81.60 -0.46 -0.52 16 8 C 0.13 1.42 5.22 -4.98 -0.03 1.40 16 9 N -0.53 -7.12 4.12 -236.12 -0.97 -8.10 16 10 C 0.05 0.84 5.29 -3.83 -0.02 0.82 16 11 C -0.10 -1.83 5.15 -26.65 -0.14 -1.96 16 12 C -0.08 -1.63 2.20 -90.50 -0.20 -1.83 16 13 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 14 C -0.51 -14.33 8.45 -34.44 -0.29 -14.62 16 15 H 0.06 1.51 7.08 -52.49 -0.37 1.14 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.11 -1.82 5.38 -26.65 -0.14 -1.96 16 23 C 0.06 0.80 5.46 -3.84 -0.02 0.78 16 24 H 0.09 1.07 7.61 -51.93 -0.40 0.68 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.09 0.60 7.46 -51.93 -0.39 0.22 16 29 H 0.20 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.08 0.73 7.32 -51.93 -0.38 0.35 16 32 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.11 6.23 -51.93 -0.32 0.79 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.48 7.05 -51.93 -0.37 1.11 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.73 8.02 -51.93 -0.42 0.31 16 44 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -31.83 347.97 -10.68 -42.51 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.69 Total: -1.89 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -2.49 Total: -15.88 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.72 Total: -46.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.83 -10.68 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516470480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.045 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds