Wall clock time and date at job start Mon Mar 30 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47226 * 2 1 4 4 C 1.53004 * 109.47212 * 173.91346 * 3 2 1 5 5 C 1.52992 * 109.47437 * 186.56206 * 4 3 2 6 6 C 1.52996 * 109.47241 * 293.91824 * 3 2 1 7 7 N 1.46904 * 109.47144 * 171.72085 * 6 3 2 8 8 C 1.46893 * 110.99874 * 282.46238 * 7 6 3 9 9 C 1.50704 * 109.47212 * 77.76175 * 8 7 6 10 10 H 1.08003 * 119.99663 * 2.45678 * 9 8 7 11 11 C 1.37875 * 120.00543 * 182.46033 * 9 8 7 12 12 N 1.31509 * 120.00136 * 174.93295 * 11 9 8 13 13 Si 1.86801 * 119.99579 * 354.93453 * 11 9 8 14 14 H 1.48507 * 109.47096 * 90.00041 * 13 11 9 15 15 H 1.48501 * 109.47035 * 209.99758 * 13 11 9 16 16 H 1.48495 * 109.47315 * 329.99889 * 13 11 9 17 17 C 1.46903 * 111.00012 * 158.50749 * 7 6 3 18 18 C 1.50697 * 109.47397 * 293.95656 * 17 7 6 19 19 C 1.38390 * 120.00117 * 94.99573 * 18 17 7 20 20 N 1.32124 * 119.99603 * 179.97438 * 19 18 17 21 21 C 1.32151 * 119.99979 * 0.02562 * 20 19 18 22 22 C 1.38348 * 120.00448 * 0.24795 * 21 20 19 23 23 N 1.32121 * 120.00063 * 274.97771 * 18 17 7 24 24 H 1.09001 * 109.47311 * 185.52049 * 1 2 3 25 25 H 1.09000 * 109.46988 * 305.52427 * 1 2 3 26 26 H 1.09001 * 109.47000 * 65.52175 * 1 2 3 27 27 H 1.08998 * 109.46890 * 240.00104 * 2 1 3 28 28 H 1.09003 * 109.47114 * 120.00603 * 2 1 3 29 29 H 1.09002 * 109.46960 * 53.91636 * 3 2 1 30 30 H 1.09005 * 109.46921 * 306.56915 * 4 3 2 31 31 H 1.09002 * 109.46672 * 66.56099 * 4 3 2 32 32 H 1.08992 * 109.47540 * 184.65837 * 5 4 3 33 33 H 1.09006 * 109.47111 * 304.66080 * 5 4 3 34 34 H 1.09005 * 109.47053 * 64.65615 * 5 4 3 35 35 H 1.08998 * 109.47452 * 51.72158 * 6 3 2 36 36 H 1.09004 * 109.47205 * 291.71496 * 6 3 2 37 37 H 1.09000 * 109.47288 * 197.75673 * 8 7 6 38 38 H 1.08990 * 109.47466 * 317.76281 * 8 7 6 39 39 H 0.97005 * 119.99708 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.47004 * 173.95145 * 17 7 6 41 41 H 1.09005 * 109.46563 * 53.95559 * 17 7 6 42 42 H 1.08000 * 120.00606 * 0.02562 * 19 18 17 43 43 H 1.08006 * 120.00232 * 179.97438 * 21 20 19 44 44 H 1.08004 * 119.99971 * 179.71987 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5624 1.4451 0.1530 5 6 4.0560 2.8839 0.3172 6 6 1.6587 2.1182 -1.3186 7 7 1.9702 3.5518 -1.2421 8 6 0.9550 4.2701 -0.4602 9 6 1.1942 4.0360 1.0092 10 1 2.0412 3.4485 1.3315 11 6 0.3319 4.5719 1.9421 12 7 0.4821 4.2861 3.2169 13 14 -1.0498 5.7038 1.3950 14 1 -2.2627 4.8985 1.1021 15 1 -1.3505 6.6762 2.4763 16 1 -0.6346 6.4363 0.1718 17 6 2.1093 4.1327 -2.5842 18 6 3.3154 3.5396 -3.2658 19 6 3.1683 2.4538 -4.1111 20 7 4.2258 1.9343 -4.7091 21 6 5.4238 2.4511 -4.4994 22 6 5.5716 3.5330 -3.6499 23 7 4.5131 4.0565 -3.0566 24 1 -0.3634 -1.0229 0.0989 25 1 -0.3633 0.5971 0.8364 26 1 -0.3633 0.4258 -0.9353 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.5905 1.9867 0.8305 30 1 3.8403 0.8630 1.0317 31 1 4.0174 1.0039 -0.7339 32 1 5.1456 2.8936 0.3431 33 1 3.7072 3.4858 -0.5221 34 1 3.6667 3.2976 1.2475 35 1 0.5917 1.9874 -1.4987 36 1 2.2230 1.6669 -2.1347 37 1 1.0199 5.3370 -0.6734 38 1 -0.0362 3.9054 -0.7295 39 1 -0.1249 4.6628 3.8732 40 1 2.2328 5.2125 -2.5017 41 1 1.2164 3.9128 -3.1695 42 1 2.1892 2.0317 -4.2828 43 1 6.2884 2.0261 -4.9879 44 1 6.5514 3.9525 -3.4751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560577392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:25 Heat of formation + Delta-G solvation = 55.521179 kcal Electronic energy + Delta-G solvation = -23064.651023 eV Core-core repulsion = 20017.566106 eV Total energy + Delta-G solvation = -3047.084917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01495 -38.20698 -35.04768 -34.01091 -32.75986 -31.58159 -31.23492 -28.18931 -27.54971 -25.44281 -24.58252 -23.80405 -22.07873 -21.19915 -20.40044 -19.37763 -17.45308 -16.95215 -16.59707 -15.84878 -15.52449 -14.90322 -14.65124 -13.98596 -13.83657 -13.54095 -13.37560 -13.25951 -12.53832 -12.39029 -12.30237 -11.95465 -11.76035 -11.64693 -11.41050 -11.38398 -11.07565 -10.98418 -10.73113 -10.70501 -10.40731 -10.14377 -9.99508 -9.85333 -9.72704 -9.54479 -9.16536 -8.91561 -8.72906 -8.40652 -7.20794 -6.03231 -3.99144 0.84844 1.25428 3.27020 3.35993 3.37437 3.75058 4.14324 4.33870 4.42332 4.54988 4.75439 4.89424 5.24666 5.25390 5.34468 5.46946 5.48444 5.51915 5.71023 5.73224 5.85241 5.96995 6.07618 6.15194 6.19149 6.30511 6.39705 6.43060 6.44707 6.59793 6.68631 6.74229 6.78148 6.85135 6.93428 7.04326 7.26502 7.37049 7.46909 7.68421 7.81399 7.87804 7.90795 7.99210 8.64949 9.11593 9.57776 11.07172 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.006446 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.353852 B = 4342.706905 C = 4943.066989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.109 4.109 4 C -0.094 4.094 5 C -0.173 4.173 6 C 0.069 3.931 7 N -0.506 5.506 8 C 0.159 3.841 9 C -0.515 4.515 10 H 0.111 0.889 11 C 0.071 3.929 12 N -0.896 5.896 13 Si 0.865 3.135 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.094 3.906 18 C 0.108 3.892 19 C 0.049 3.951 20 N -0.440 5.440 21 C 0.033 3.967 22 C 0.053 3.947 23 N -0.416 5.416 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.133 0.867 30 H 0.039 0.961 31 H 0.028 0.972 32 H 0.010 0.990 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.048 0.952 37 H 0.027 0.973 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -4.380 -13.090 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.127 4.127 4 C -0.131 4.131 5 C -0.229 4.229 6 C -0.059 4.059 7 N -0.230 5.230 8 C 0.034 3.966 9 C -0.553 4.553 10 H 0.129 0.871 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.693 3.307 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.193 1.193 17 C -0.035 4.035 18 C -0.034 4.034 19 C -0.111 4.111 20 N -0.155 5.155 21 C -0.127 4.127 22 C -0.107 4.107 23 N -0.131 5.131 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.150 0.850 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.135 0.865 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.180 0.820 43 H 0.181 0.819 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.600 -4.273 -12.675 14.501 hybrid contribution -1.438 0.396 -0.576 1.598 sum 4.162 -3.877 -13.251 14.420 Atomic orbital electron populations 1.21791 0.96344 1.00344 1.02236 1.21519 0.95624 0.97658 1.00433 1.21769 0.95932 0.94275 1.00719 1.21284 0.95406 0.98056 0.98384 1.22458 0.96547 0.97144 1.06798 1.22190 0.97780 0.88327 0.97615 1.62167 1.48730 1.02600 1.09456 1.20326 0.87732 0.93532 0.95046 1.21490 1.13161 1.33055 0.87549 0.87128 1.24887 0.97100 0.96159 0.94897 1.69880 1.38393 1.44482 1.00783 0.87003 0.83233 0.81763 0.78712 1.20557 1.21346 1.19308 1.21027 0.90942 1.00329 0.91193 1.22299 0.94398 0.93157 0.93507 1.23572 0.98642 0.94256 0.94654 1.68395 0.99212 1.27536 1.20309 1.23663 0.96036 0.95217 0.97803 1.23786 0.98832 0.94489 0.93619 1.68343 0.98424 1.28295 1.18047 0.94011 0.91824 0.93218 0.93727 0.92578 0.84958 0.94260 0.95312 0.97062 0.86460 0.91721 0.94910 0.93340 0.95521 0.99187 0.92732 0.88867 0.93627 0.82018 0.81874 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.57 37.16 0.36 -2.02 16 2 C -0.11 -1.87 5.39 -26.73 -0.14 -2.02 16 3 C -0.11 -2.05 1.84 -90.62 -0.17 -2.22 16 4 C -0.09 -1.76 5.39 -26.73 -0.14 -1.90 16 5 C -0.17 -3.53 8.65 37.15 0.32 -3.20 16 6 C 0.07 1.21 4.13 -3.82 -0.02 1.20 16 7 N -0.51 -9.54 1.12 -237.52 -0.27 -9.81 16 8 C 0.16 3.52 3.86 -4.98 -0.02 3.50 16 9 C -0.52 -13.27 7.71 -34.44 -0.27 -13.53 16 10 H 0.11 3.01 3.02 -52.48 -0.16 2.85 16 11 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 12 N -0.90 -26.08 13.96 55.43 0.77 -25.30 16 13 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.14 6.57 56.52 0.37 -5.77 16 17 C 0.09 1.50 5.26 -4.98 -0.03 1.47 16 18 C 0.11 1.61 5.38 -82.41 -0.44 1.16 16 19 C 0.05 0.67 9.15 -17.37 -0.16 0.51 16 20 N -0.44 -5.93 10.50 -13.06 -0.14 -6.06 16 21 C 0.03 0.37 11.22 -17.37 -0.20 0.17 16 22 C 0.05 0.63 11.22 -17.37 -0.20 0.44 16 23 N -0.42 -6.32 10.30 -9.29 -0.10 -6.42 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.75 6.69 -51.93 -0.35 0.41 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 29 H 0.13 3.05 4.40 -51.93 -0.23 2.82 16 30 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.03 0.52 8.11 -51.93 -0.42 0.09 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.12 2.43 4.44 -51.93 -0.23 2.19 16 34 H 0.06 1.51 6.00 -51.93 -0.31 1.20 16 35 H 0.03 0.58 5.91 -51.93 -0.31 0.27 16 36 H 0.05 0.79 5.28 -51.93 -0.27 0.52 16 37 H 0.03 0.60 6.75 -51.93 -0.35 0.25 16 38 H -0.01 -0.21 7.13 -51.93 -0.37 -0.58 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.09 1.51 7.81 -51.93 -0.41 1.10 16 41 H 0.05 0.64 8.03 -51.93 -0.42 0.22 16 42 H 0.16 1.89 7.89 -52.49 -0.41 1.48 16 43 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -29.13 333.10 -7.35 -36.48 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.78 Total: 4.79 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -1.19 Total: -14.60 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.27 Total: -47.59 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.13 -7.35 -36.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560577392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.005 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds