Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47147 * 2 1 4 4 H 1.08999 * 109.46715 * 304.24188 * 3 2 1 5 5 C 1.50703 * 109.46873 * 184.24625 * 3 2 1 6 6 H 1.08001 * 119.99901 * 239.99055 * 5 3 2 7 7 C 1.37879 * 120.00242 * 60.00333 * 5 3 2 8 8 N 1.31511 * 119.99770 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00068 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47057 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47228 * 119.99432 * 9 7 5 12 12 H 1.48500 * 109.46944 * 239.99653 * 9 7 5 13 13 N 1.46897 * 109.47426 * 64.24418 * 3 2 1 14 14 C 1.46888 * 111.00203 * 205.87107 * 13 3 2 15 15 C 1.50700 * 109.47442 * 174.80604 * 14 13 3 16 16 C 1.39865 * 125.89760 * 94.71174 * 15 14 13 17 17 C 1.35315 * 107.92409 * 179.86794 * 16 15 14 18 18 N 1.34952 * 107.74283 * 0.39643 * 17 16 15 19 19 C 1.46498 * 126.03570 * 179.74812 * 18 17 16 20 20 C 1.54265 * 110.03469 * 32.88531 * 19 18 17 21 21 C 1.54964 * 104.15914 * 217.13618 * 20 19 18 22 22 C 1.54885 * 102.77798 * 37.88466 * 21 20 19 23 23 C 1.53876 * 110.03218 * 275.66387 * 19 18 17 24 24 N 1.30840 * 125.90191 * 275.03284 * 15 14 13 25 25 H 1.09006 * 109.47285 * 294.90098 * 1 2 3 26 26 H 1.08996 * 109.46798 * 54.90566 * 1 2 3 27 27 H 1.09007 * 109.46933 * 174.90404 * 1 2 3 28 28 H 1.09007 * 109.47624 * 239.99922 * 2 1 3 29 29 H 1.09009 * 109.47188 * 119.99411 * 2 1 3 30 30 H 0.97008 * 119.99974 * 180.02562 * 8 7 5 31 31 H 1.00903 * 110.99541 * 81.91313 * 13 3 2 32 32 H 1.09002 * 109.47491 * 294.80944 * 14 13 3 33 33 H 1.08999 * 109.47142 * 54.80731 * 14 13 3 34 34 H 1.08005 * 126.04387 * 359.97438 * 16 15 14 35 35 H 1.08005 * 126.13211 * 180.14711 * 17 16 15 36 36 H 1.09001 * 110.01559 * 154.27752 * 19 18 17 37 37 H 1.08999 * 110.48690 * 335.78399 * 20 19 18 38 38 H 1.09001 * 110.48365 * 98.42366 * 20 19 18 39 39 H 1.09003 * 110.71847 * 279.57014 * 21 20 19 40 40 H 1.09004 * 110.76304 * 156.22495 * 21 20 19 41 41 H 1.09002 * 110.48657 * 203.40250 * 22 21 20 42 42 H 1.08997 * 110.59801 * 80.82105 * 22 21 20 43 43 H 1.08998 * 110.03735 * 238.56883 * 23 19 18 44 44 H 1.08995 * 110.03508 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5433 1.4438 -0.1052 6 1 4.1390 1.8919 0.6764 7 6 4.1583 0.8731 -1.1993 8 7 3.4330 0.3272 -2.1509 9 14 6.0217 0.8753 -1.3300 10 1 6.6007 1.5465 -0.1386 11 1 6.5148 -0.5237 -1.3989 12 1 6.4310 1.6053 -2.5567 13 7 1.6358 2.1049 1.2473 14 6 1.5392 3.5590 1.0639 15 6 1.0013 4.1896 2.3225 16 6 1.7667 4.7359 3.3578 17 6 0.9173 5.2022 4.3023 18 7 -0.3409 4.9517 3.8837 19 6 -1.5717 5.2860 4.6045 20 6 -1.3763 6.5882 5.4082 21 6 -2.1686 6.3477 6.7181 22 6 -1.8933 4.8528 7.0154 23 6 -1.9007 4.1830 5.6257 24 7 -0.2622 4.3153 2.6382 25 1 -0.3634 0.4327 0.9322 26 1 -0.3633 0.5908 -0.8408 27 1 -0.3633 -1.0237 -0.0913 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8657 -0.0746 -2.9205 31 1 2.2686 1.8765 1.9994 32 1 2.5277 3.9646 0.8481 33 1 0.8680 3.7766 0.2331 34 1 2.8452 4.7796 3.3960 35 1 1.1964 5.6845 5.2275 36 1 -2.3963 5.4016 3.9011 37 1 -0.3201 6.7477 5.6252 38 1 -1.7873 7.4381 4.8633 39 1 -3.2334 6.5208 6.5620 40 1 -1.7873 6.9780 7.5215 41 1 -2.6814 4.4373 7.6433 42 1 -0.9214 4.7295 7.4931 43 1 -2.8853 3.7639 5.4185 44 1 -1.1444 3.3992 5.5854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565170848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = 60.342183 kcal Electronic energy + Delta-G solvation = -21432.744689 eV Core-core repulsion = 18385.868826 eV Total energy + Delta-G solvation = -3046.875863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03992 -38.16010 -36.08931 -33.08345 -31.74354 -30.75993 -29.84129 -29.04290 -27.87097 -26.31440 -24.24348 -22.37509 -22.00452 -20.92189 -19.58335 -19.54657 -19.10336 -17.30267 -16.60960 -16.05924 -14.87581 -14.84034 -14.52139 -14.24119 -13.83122 -13.56838 -13.27283 -13.12010 -12.86092 -12.60659 -12.25231 -11.94485 -11.61087 -11.52431 -11.50606 -11.48611 -11.12311 -11.10283 -10.98956 -10.92171 -10.81230 -10.59616 -10.22971 -10.00648 -9.54311 -9.48106 -9.00641 -8.86062 -8.33870 -8.25435 -7.16950 -5.95022 -4.08028 2.17875 2.67832 3.18617 3.29207 3.37647 3.40921 4.08042 4.21117 4.43322 4.51759 4.87634 4.93617 4.98315 5.07436 5.12224 5.19698 5.25506 5.31170 5.43953 5.51518 5.62397 5.68993 5.78330 5.89310 5.92485 5.96269 6.07704 6.21473 6.46272 6.49569 6.57535 6.60603 6.81379 7.05045 7.21210 7.27528 7.30981 7.50911 7.65845 7.83214 8.13976 8.16431 8.20908 8.38935 8.72679 9.05578 9.59486 11.04955 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.003459 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.871507 B = 8093.107204 C = 8658.746144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.680 5.680 14 C 0.143 3.857 15 C 0.093 3.907 16 C -0.266 4.266 17 C 0.043 3.957 18 N -0.374 5.374 19 C 0.160 3.840 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.137 4.137 24 N -0.281 5.281 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.329 0.671 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.164 0.836 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 11.407 16.566 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.310 5.310 14 C 0.012 3.988 15 C -0.074 4.074 16 C -0.296 4.296 17 C -0.102 4.102 18 N -0.156 5.156 19 C 0.058 3.942 20 C -0.174 4.174 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.176 4.176 24 N -0.102 5.102 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.356 11.024 15.975 22.487 hybrid contribution 2.916 0.348 0.127 2.940 sum -8.439 11.372 16.102 21.443 Atomic orbital electron populations 1.21683 0.98967 0.98125 1.00518 1.21485 0.92111 0.99130 1.01582 1.19176 0.92690 0.91210 0.86123 0.94887 1.21929 0.92709 1.37910 1.05822 0.92686 1.24937 0.97939 0.95021 0.95664 1.69896 1.34760 1.38099 1.09559 0.86599 0.86140 0.77686 0.77911 1.19891 1.21026 1.21086 1.60824 1.55499 1.04819 1.09897 1.20115 0.98407 0.89942 0.90363 1.22606 0.90212 0.97138 0.97476 1.21445 1.00371 1.11237 0.96506 1.22233 0.85000 1.02605 1.00397 1.48817 1.04783 1.46394 1.15654 1.21858 0.84857 0.94425 0.93084 1.22833 1.02023 0.96296 0.96288 1.22484 1.00348 0.96551 0.96579 1.22372 1.02094 0.95145 0.96594 1.22622 1.03059 0.97971 0.93949 1.77413 1.20102 1.16913 0.95819 0.93420 0.94447 0.95806 0.89181 0.95155 0.92970 0.85501 0.93375 0.90826 0.83971 0.81891 0.88108 0.90250 0.90411 0.90933 0.90889 0.91149 0.91367 0.90448 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.73 37.15 0.36 -2.60 16 2 C -0.10 -2.58 5.45 -26.73 -0.15 -2.73 16 3 C 0.22 5.44 1.98 -68.86 -0.14 5.31 16 4 H 0.03 0.92 7.70 -51.93 -0.40 0.52 16 5 C -0.54 -14.73 8.47 -34.44 -0.29 -15.02 16 6 H 0.05 1.47 7.73 -52.49 -0.41 1.07 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.17 11.29 55.43 0.63 -24.54 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.68 -15.02 5.72 -109.23 -0.62 -15.65 16 14 C 0.14 2.90 6.07 -4.98 -0.03 2.87 16 15 C 0.09 1.71 6.78 -82.41 -0.56 1.15 16 16 C -0.27 -4.16 10.74 -40.01 -0.43 -4.59 16 17 C 0.04 0.57 10.43 -17.22 -0.18 0.39 16 18 N -0.37 -5.34 3.44 -53.78 -0.19 -5.52 16 19 C 0.16 1.69 4.00 -66.81 -0.27 1.42 16 20 C -0.14 -1.03 6.38 -25.03 -0.16 -1.19 16 21 C -0.12 -0.72 6.91 -24.70 -0.17 -0.89 16 22 C -0.12 -0.86 6.83 -25.08 -0.17 -1.03 16 23 C -0.14 -1.30 6.60 -25.61 -0.17 -1.47 16 24 N -0.28 -5.15 12.58 33.67 0.42 -4.73 16 25 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.09 2.45 5.97 -51.93 -0.31 2.14 16 29 H 0.03 0.74 8.14 -51.92 -0.42 0.31 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.33 7.22 8.45 -39.29 -0.33 6.89 16 32 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 34 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 35 H 0.16 1.54 6.92 -52.48 -0.36 1.17 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.60 5.96 -51.93 -0.31 0.29 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -29.99 351.89 -9.48 -39.47 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.56 Total: 6.16 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.44 Total: -16.65 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.24 Total: -50.44 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.99 -9.48 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565170848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.810 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds