Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47147 * 2 1 4 4 H 1.08999 * 109.46715 * 304.24188 * 3 2 1 5 5 C 1.50703 * 109.46873 * 184.24625 * 3 2 1 6 6 H 1.08001 * 119.99901 * 239.99055 * 5 3 2 7 7 C 1.37879 * 120.00242 * 60.00333 * 5 3 2 8 8 N 1.31511 * 119.99770 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00068 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47057 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47228 * 119.99432 * 9 7 5 12 12 H 1.48500 * 109.46944 * 239.99653 * 9 7 5 13 13 N 1.46897 * 109.47426 * 64.24418 * 3 2 1 14 14 C 1.46888 * 111.00203 * 205.87107 * 13 3 2 15 15 C 1.50700 * 109.47442 * 174.80604 * 14 13 3 16 16 C 1.39865 * 125.89760 * 94.71174 * 15 14 13 17 17 C 1.35315 * 107.92409 * 179.86794 * 16 15 14 18 18 N 1.34952 * 107.74283 * 0.39643 * 17 16 15 19 19 C 1.46498 * 126.03570 * 179.74812 * 18 17 16 20 20 C 1.54265 * 110.03469 * 32.88531 * 19 18 17 21 21 C 1.54964 * 104.15914 * 217.13618 * 20 19 18 22 22 C 1.54885 * 102.77798 * 37.88466 * 21 20 19 23 23 C 1.53876 * 110.03218 * 275.66387 * 19 18 17 24 24 N 1.30840 * 125.90191 * 275.03284 * 15 14 13 25 25 H 1.09006 * 109.47285 * 294.90098 * 1 2 3 26 26 H 1.08996 * 109.46798 * 54.90566 * 1 2 3 27 27 H 1.09007 * 109.46933 * 174.90404 * 1 2 3 28 28 H 1.09007 * 109.47624 * 239.99922 * 2 1 3 29 29 H 1.09009 * 109.47188 * 119.99411 * 2 1 3 30 30 H 0.97008 * 119.99974 * 180.02562 * 8 7 5 31 31 H 1.00903 * 110.99541 * 81.91313 * 13 3 2 32 32 H 1.09002 * 109.47491 * 294.80944 * 14 13 3 33 33 H 1.08999 * 109.47142 * 54.80731 * 14 13 3 34 34 H 1.08005 * 126.04387 * 359.97438 * 16 15 14 35 35 H 1.08005 * 126.13211 * 180.14711 * 17 16 15 36 36 H 1.09001 * 110.01559 * 154.27752 * 19 18 17 37 37 H 1.08999 * 110.48690 * 335.78399 * 20 19 18 38 38 H 1.09001 * 110.48365 * 98.42366 * 20 19 18 39 39 H 1.09003 * 110.71847 * 279.57014 * 21 20 19 40 40 H 1.09004 * 110.76304 * 156.22495 * 21 20 19 41 41 H 1.09002 * 110.48657 * 203.40250 * 22 21 20 42 42 H 1.08997 * 110.59801 * 80.82105 * 22 21 20 43 43 H 1.08998 * 110.03735 * 238.56883 * 23 19 18 44 44 H 1.08995 * 110.03508 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5433 1.4438 -0.1052 6 1 4.1390 1.8919 0.6764 7 6 4.1583 0.8731 -1.1993 8 7 3.4330 0.3272 -2.1509 9 14 6.0217 0.8753 -1.3300 10 1 6.6007 1.5465 -0.1386 11 1 6.5148 -0.5237 -1.3989 12 1 6.4310 1.6053 -2.5567 13 7 1.6358 2.1049 1.2473 14 6 1.5392 3.5590 1.0639 15 6 1.0013 4.1896 2.3225 16 6 1.7667 4.7359 3.3578 17 6 0.9173 5.2022 4.3023 18 7 -0.3409 4.9517 3.8837 19 6 -1.5717 5.2860 4.6045 20 6 -1.3763 6.5882 5.4082 21 6 -2.1686 6.3477 6.7181 22 6 -1.8933 4.8528 7.0154 23 6 -1.9007 4.1830 5.6257 24 7 -0.2622 4.3153 2.6382 25 1 -0.3634 0.4327 0.9322 26 1 -0.3633 0.5908 -0.8408 27 1 -0.3633 -1.0237 -0.0913 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8657 -0.0746 -2.9205 31 1 2.2686 1.8765 1.9994 32 1 2.5277 3.9646 0.8481 33 1 0.8680 3.7766 0.2331 34 1 2.8452 4.7796 3.3960 35 1 1.1964 5.6845 5.2275 36 1 -2.3963 5.4016 3.9011 37 1 -0.3201 6.7477 5.6252 38 1 -1.7873 7.4381 4.8633 39 1 -3.2334 6.5208 6.5620 40 1 -1.7873 6.9780 7.5215 41 1 -2.6814 4.4373 7.6433 42 1 -0.9214 4.7295 7.4931 43 1 -2.8853 3.7639 5.4185 44 1 -1.1444 3.3992 5.5854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565170848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = 42.919693 kcal Electronic energy + Delta-G solvation = -21433.500184 eV Core-core repulsion = 18385.868826 eV Total energy + Delta-G solvation = -3047.631358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.19967 -38.95969 -37.94238 -34.76868 -33.46396 -32.27770 -31.01725 -29.71540 -29.25251 -27.89147 -25.90603 -24.24920 -22.97279 -21.59487 -21.42956 -20.58118 -20.46136 -18.69855 -18.21135 -16.83010 -16.80099 -16.11270 -15.71935 -15.52603 -15.23839 -14.95978 -14.66179 -14.36547 -14.17571 -13.99310 -13.69748 -13.34371 -13.09970 -13.03567 -12.83311 -12.64511 -12.52796 -12.44618 -12.10556 -12.05604 -12.02155 -11.75468 -11.53971 -11.52620 -11.48351 -11.30312 -11.02368 -10.45838 -10.14432 -9.44107 -9.04607 -8.03641 -6.25980 1.01608 1.40171 1.42446 1.53120 1.63783 1.87261 2.42715 3.16425 3.36311 3.56890 3.74334 3.88157 3.89134 4.03475 4.26549 4.38309 4.41810 4.47475 4.50210 4.60075 4.68187 4.72808 4.75168 4.83884 4.90402 4.92184 4.93513 5.01775 5.12105 5.15111 5.19686 5.24617 5.24948 5.39575 5.41709 5.51887 5.62447 5.73306 5.77028 6.09630 6.18891 6.28394 6.38068 6.77374 6.90292 7.01785 7.45437 8.93805 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.003459 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.871507 B = 8093.107204 C = 8658.746144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.100 4.100 3 C 0.223 3.777 4 H 0.000 1.000 5 C -0.559 4.559 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.674 5.674 14 C 0.151 3.849 15 C 0.072 3.928 16 C -0.287 4.287 17 C 0.064 3.936 18 N -0.366 5.366 19 C 0.147 3.853 20 C -0.130 4.130 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.135 4.135 24 N -0.322 5.322 25 H 0.049 0.951 26 H 0.029 0.971 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.331 0.669 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.153 0.847 35 H 0.209 0.791 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 12.693 19.192 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.139 4.139 3 C 0.115 3.885 4 H 0.017 0.983 5 C -0.598 4.598 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.304 5.304 14 C 0.020 3.980 15 C -0.094 4.094 16 C -0.316 4.316 17 C -0.082 4.082 18 N -0.149 5.149 19 C 0.046 3.954 20 C -0.168 4.168 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.174 4.174 24 N -0.145 5.145 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.170 0.830 35 H 0.226 0.774 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.310 12.316 18.611 25.019 hybrid contribution 2.796 -0.014 -0.641 2.868 sum -8.514 12.302 17.970 23.382 Atomic orbital electron populations 1.21531 0.96772 0.99439 1.00244 1.21352 0.94039 0.98354 1.00132 1.18954 0.91902 0.91417 0.86260 0.98253 1.22189 0.93675 1.37921 1.05984 0.92777 1.25701 1.02400 0.94679 0.95344 1.70025 1.36507 1.38614 1.09991 0.85566 0.80718 0.77722 0.77958 1.19210 1.20608 1.20800 1.60742 1.55054 1.06068 1.08489 1.19915 0.97817 0.88815 0.91443 1.22292 0.91043 0.98541 0.97504 1.21630 1.01247 1.12246 0.96504 1.22827 0.83868 1.00593 1.00899 1.49116 1.06480 1.44872 1.14390 1.22293 0.83358 0.96592 0.93165 1.22852 1.02851 0.94488 0.96607 1.22479 1.00711 0.95872 0.95982 1.22362 1.02812 0.95652 0.94810 1.22591 1.02194 0.97107 0.95499 1.77293 1.20257 1.18569 0.98337 0.93233 0.95175 0.93551 0.91726 0.95297 0.92872 0.85302 0.93963 0.92554 0.82953 0.77425 0.88890 0.89602 0.89756 0.90120 0.89006 0.89971 0.91045 0.90278 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 9.73 71.98 0.70 -4.69 16 2 C -0.10 -5.06 5.45 30.59 0.17 -4.89 16 3 C 0.22 11.67 1.98 44.17 0.09 11.75 16 4 H 0.00 -0.03 7.70 -2.39 -0.02 -0.05 16 5 C -0.56 -30.83 8.47 25.60 0.22 -30.61 16 6 H 0.05 2.93 7.73 -2.91 -0.02 2.91 16 7 C 0.02 1.04 5.29 84.66 0.45 1.48 16 8 N -0.91 -52.98 11.29 21.45 0.24 -52.74 16 9 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.67 -30.70 5.72 -499.48 -2.86 -33.56 16 14 C 0.15 6.40 6.07 85.56 0.52 6.92 16 15 C 0.07 2.70 6.78 43.10 0.29 2.99 16 16 C -0.29 -8.74 10.74 21.99 0.24 -8.50 16 17 C 0.06 1.56 10.43 83.54 0.87 2.43 16 18 N -0.37 -10.06 3.44 -324.05 -1.12 -11.17 16 19 C 0.15 2.87 4.00 45.72 0.18 3.05 16 20 C -0.13 -1.56 6.38 31.69 0.20 -1.36 16 21 C -0.11 -0.91 6.91 31.91 0.22 -0.69 16 22 C -0.12 -1.28 6.83 31.67 0.22 -1.07 16 23 C -0.14 -2.37 6.60 31.32 0.21 -2.16 16 24 N -0.32 -11.96 12.58 -47.39 -0.60 -12.55 16 25 H 0.05 2.14 7.88 -2.38 -0.02 2.12 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.06 3.62 5.97 -2.38 -0.01 3.60 16 29 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 31 H 0.33 14.83 8.45 -89.69 -0.76 14.07 16 32 H 0.04 1.80 8.11 -2.39 -0.02 1.78 16 33 H 0.06 2.51 7.92 -2.39 -0.02 2.50 16 34 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 35 H 0.21 3.01 6.92 -2.91 -0.02 2.99 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 0.94 5.96 -2.39 -0.01 0.93 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 1.16 7.92 -2.39 -0.02 1.14 16 Total: -1.00 -66.29 351.89 2.48 -63.81 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.21 Total: 25.77 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 4.57 Total: -25.34 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -4.33 Total: -110.02 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -66.29 2.48 -63.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565170848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.733 kcal (2) G-P(sol) polarization free energy of solvation -66.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds