Wall clock time and date at job start Mon Mar 30 2020 01:48:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52995 * 109.47059 * 2 1
4 4 H 1.09001 * 109.47038 * 179.82353 * 3 2 1
5 5 C 1.50697 * 109.47060 * 299.82769 * 3 2 1
6 6 H 1.08000 * 120.00174 * 120.00139 * 5 3 2
7 7 C 1.37875 * 119.99982 * 299.99524 * 5 3 2
8 8 N 1.31510 * 120.00249 * 0.02562 * 7 5 3
9 9 Si 1.86799 * 120.00173 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.46989 * 60.00384 * 9 7 5
11 11 H 1.48498 * 109.47254 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.47539 * 300.00659 * 9 7 5
13 13 N 1.46909 * 109.47291 * 59.82669 * 3 2 1
14 14 C 1.46899 * 110.99562 * 85.92764 * 13 3 2
15 15 C 1.50704 * 109.46488 * 175.54549 * 14 13 3
16 16 C 1.39871 * 125.89568 * 94.71741 * 15 14 13
17 17 C 1.35321 * 107.92005 * 179.86245 * 16 15 14
18 18 N 1.34957 * 107.74224 * 0.39497 * 17 16 15
19 19 C 1.46497 * 126.03546 * 179.75322 * 18 17 16
20 20 C 1.54266 * 110.03426 * 32.88133 * 19 18 17
21 21 C 1.54968 * 104.15927 * 217.13994 * 20 19 18
22 22 C 1.54888 * 102.77973 * 37.88708 * 21 20 19
23 23 C 1.53878 * 110.02913 * 275.66805 * 19 18 17
24 24 N 1.30840 * 125.89982 * 275.02343 * 15 14 13
25 25 H 1.09001 * 109.47026 * 175.59526 * 1 2 3
26 26 H 1.08992 * 109.47147 * 55.58766 * 1 2 3
27 27 H 1.09005 * 109.46940 * 295.58523 * 1 2 3
28 28 H 1.09003 * 109.46724 * 120.00103 * 2 1 3
29 29 H 1.08999 * 109.47203 * 239.99943 * 2 1 3
30 30 H 0.97002 * 120.00745 * 179.97438 * 8 7 5
31 31 H 1.00896 * 110.99633 * 209.88487 * 13 3 2
32 32 H 1.08995 * 109.47219 * 295.54380 * 14 13 3
33 33 H 1.08999 * 109.47280 * 55.55056 * 14 13 3
34 34 H 1.07998 * 126.04143 * 359.97438 * 16 15 14
35 35 H 1.07991 * 126.12981 * 180.14783 * 17 16 15
36 36 H 1.08994 * 110.01959 * 154.27549 * 19 18 17
37 37 H 1.09007 * 110.48623 * 335.78546 * 20 19 18
38 38 H 1.08994 * 110.48768 * 98.42919 * 20 19 18
39 39 H 1.09000 * 110.71977 * 279.57037 * 21 20 19
40 40 H 1.09005 * 110.76478 * 156.22103 * 21 20 19
41 41 H 1.08996 * 110.48865 * 203.40464 * 22 21 20
42 42 H 1.08999 * 110.59824 * 80.81657 * 22 21 20
43 43 H 1.09007 * 110.02546 * 238.56948 * 23 19 18
44 44 H 1.09001 * 110.03262 * 359.97438 * 23 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1300 1.4425 0.0032
5 6 1.5412 2.1516 -1.2326
6 1 0.9200 3.0298 -1.1362
7 6 1.8779 1.6793 -2.4834
8 7 2.6340 0.6098 -2.6009
9 14 1.2590 2.5579 -4.0113
10 1 1.7534 3.9582 -4.0115
11 1 1.7571 1.8564 -5.2216
12 1 -0.2260 2.5574 -4.0154
13 7 1.5469 2.1362 1.1974
14 6 2.4393 1.9095 2.3420
15 6 1.9631 2.7219 3.5187
16 6 1.1270 2.2681 4.5440
17 6 0.9355 3.2912 5.4087
18 7 1.6189 4.3574 4.9421
19 6 1.6833 5.6807 5.5673
20 6 1.6151 5.5438 7.1023
21 6 0.7691 6.7611 7.5542
22 6 -0.3003 6.8681 6.4389
23 6 0.4662 6.5225 5.1455
24 7 2.2559 3.9751 3.7545
25 1 -0.3633 -1.0246 -0.0789
26 1 -0.3633 0.5807 -0.8477
27 1 -0.3633 0.4438 0.9269
28 1 1.8933 -0.5139 0.8900
29 1 1.8934 -0.5138 -0.8900
30 1 2.8706 0.2772 -3.4809
31 1 1.4287 3.1226 1.0208
32 1 2.4322 0.8515 2.6043
33 1 3.4527 2.2117 2.0782
34 1 0.7097 1.2758 4.6314
35 1 0.3392 3.2613 6.3085
36 1 2.6049 6.1856 5.2780
37 1 1.1221 4.6124 7.3808
38 1 2.6146 5.5915 7.5343
39 1 1.3801 7.6629 7.5914
40 1 0.3018 6.5697 8.5203
41 1 -0.6979 7.8816 6.3875
42 1 -1.1044 6.1520 6.6086
43 1 0.7974 7.4365 4.6523
44 1 -0.1720 5.9466 4.4753
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000565170861.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:48:45
Heat of formation + Delta-G solvation = 63.389230 kcal
Electronic energy + Delta-G solvation = -21465.721453 eV
Core-core repulsion = 18418.977721 eV
Total energy + Delta-G solvation = -3046.743733 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.185 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.09457 -38.19232 -36.17776 -33.17911 -31.71627 -30.48497 -29.83884 -29.05859
-27.89894 -26.26230 -24.15681 -22.99131 -22.02592 -20.94978 -19.70281 -19.39299
-18.87571 -17.36228 -16.37276 -15.99069 -14.88050 -14.85083 -14.46338 -14.28010
-14.01941 -13.70378 -13.26634 -13.09998 -12.95313 -12.57154 -12.17624 -11.99063
-11.74945 -11.58135 -11.52797 -11.50879 -11.23238 -11.07711 -10.94029 -10.85993
-10.72780 -10.32697 -10.29238 -10.03824 -9.63905 -9.31302 -8.97746 -8.70562
-8.39995 -8.27419 -7.14361 -5.95781 -4.00782 2.12202 2.62526 3.13304
3.35455 3.39539 3.42859 4.05616 4.19065 4.46017 4.49977 4.85233
4.89969 4.96014 5.05321 5.09728 5.16790 5.23475 5.35124 5.42039
5.50093 5.65464 5.67853 5.68637 5.79261 5.89976 5.91155 6.04113
6.21090 6.32005 6.48204 6.62086 6.76107 6.93688 6.98915 7.26655
7.31633 7.38516 7.56935 7.82426 7.85926 7.91715 8.06769 8.34366
8.46796 8.73919 9.08268 9.63455 11.10144
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.025884 B = 0.003505 C = 0.003273
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1081.474271 B = 7985.741711 C = 8553.478620
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.102 4.102
3 C 0.216 3.784
4 H 0.002 0.998
5 C -0.511 4.511
6 H 0.058 0.942
7 C 0.064 3.936
8 N -0.890 5.890
9 Si 0.893 3.107
10 H -0.278 1.278
11 H -0.288 1.288
12 H -0.277 1.277
13 N -0.677 5.677
14 C 0.138 3.862
15 C 0.092 3.908
16 C -0.252 4.252
17 C 0.042 3.958
18 N -0.372 5.372
19 C 0.160 3.840
20 C -0.136 4.136
21 C -0.122 4.122
22 C -0.124 4.124
23 C -0.138 4.138
24 N -0.295 5.295
25 H 0.013 0.987
26 H 0.055 0.945
27 H 0.042 0.958
28 H 0.011 0.989
29 H 0.086 0.914
30 H 0.261 0.739
31 H 0.333 0.667
32 H 0.081 0.919
33 H 0.033 0.967
34 H 0.145 0.855
35 H 0.165 0.835
36 H 0.101 0.899
37 H 0.079 0.921
38 H 0.077 0.923
39 H 0.072 0.928
40 H 0.073 0.927
41 H 0.070 0.930
42 H 0.068 0.932
43 H 0.077 0.923
44 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.603 8.965 20.260 22.446
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.141 4.141
3 C 0.109 3.891
4 H 0.019 0.981
5 C -0.550 4.550
6 H 0.076 0.924
7 C -0.138 4.138
8 N -0.528 5.528
9 Si 0.721 3.279
10 H -0.204 1.204
11 H -0.214 1.214
12 H -0.202 1.202
13 N -0.309 5.309
14 C 0.007 3.993
15 C -0.075 4.075
16 C -0.282 4.282
17 C -0.103 4.103
18 N -0.154 5.154
19 C 0.057 3.943
20 C -0.174 4.174
21 C -0.160 4.160
22 C -0.162 4.162
23 C -0.177 4.177
24 N -0.117 5.117
25 H 0.032 0.968
26 H 0.074 0.926
27 H 0.061 0.939
28 H 0.029 0.971
29 H 0.105 0.895
30 H 0.071 0.929
31 H 0.150 0.850
32 H 0.099 0.901
33 H 0.052 0.948
34 H 0.162 0.838
35 H 0.182 0.818
36 H 0.119 0.881
37 H 0.098 0.902
38 H 0.096 0.904
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.089 0.911
42 H 0.087 0.913
43 H 0.096 0.904
44 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -3.299 9.490 19.935 22.324
hybrid contribution -0.058 0.261 -0.798 0.841
sum -3.357 9.751 19.138 21.739
Atomic orbital electron populations
1.21447 0.97542 0.97324 1.01365 1.21435 0.95025 0.98183 0.99464
1.19164 0.93033 0.91485 0.85455 0.98064 1.21151 1.31561 1.11909
0.90350 0.92411 1.24869 0.95081 0.95023 0.98839 1.69871 1.36711
1.22715 1.23534 0.86640 0.79238 0.79661 0.82342 1.20410 1.21367
1.20233 1.60770 1.48238 1.16250 1.05644 1.20304 0.94396 0.97073
0.87537 1.22521 0.96478 0.91599 0.96927 1.21381 1.08183 1.01019
0.97630 1.22270 0.99462 0.87997 1.00590 1.48736 1.38423 1.09387
1.18870 1.21876 1.00364 0.80050 0.91968 1.22832 1.01561 1.00007
0.93009 1.22486 0.97127 0.97701 0.98648 1.22370 0.97840 1.01912
0.94073 1.22630 0.96423 1.00208 0.98404 1.77361 1.20180 1.14469
0.99726 0.96838 0.92587 0.93902 0.97076 0.89535 0.92943 0.84963
0.90078 0.94849 0.83770 0.81764 0.88119 0.90212 0.90407 0.90931
0.90851 0.91121 0.91320 0.90437 0.90485
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.74 9.52 37.16 0.35 -2.39 16
2 C -0.10 -2.53 5.59 -26.73 -0.15 -2.68 16
3 C 0.22 5.51 2.30 -68.86 -0.16 5.35 16
4 H 0.00 0.05 7.71 -51.93 -0.40 -0.35 16
5 C -0.51 -14.08 7.26 -34.44 -0.25 -14.33 16
6 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16
7 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16
8 N -0.89 -25.50 11.32 55.43 0.63 -24.88 16
9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16
10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
13 N -0.68 -15.09 5.64 -109.22 -0.62 -15.70 16
14 C 0.14 2.71 6.10 -4.97 -0.03 2.68 16
15 C 0.09 1.65 6.68 -82.40 -0.55 1.10 16
16 C -0.25 -3.88 10.74 -40.01 -0.43 -4.31 16
17 C 0.04 0.54 10.43 -17.22 -0.18 0.36 16
18 N -0.37 -5.21 3.44 -53.78 -0.19 -5.40 16
19 C 0.16 1.66 4.00 -66.81 -0.27 1.39 16
20 C -0.14 -1.01 6.38 -25.03 -0.16 -1.17 16
21 C -0.12 -0.71 6.91 -24.70 -0.17 -0.88 16
22 C -0.12 -0.86 6.83 -25.08 -0.17 -1.03 16
23 C -0.14 -1.30 6.59 -25.61 -0.17 -1.47 16
24 N -0.30 -5.30 12.58 33.67 0.42 -4.88 16
25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16
26 H 0.06 1.39 7.07 -51.93 -0.37 1.02 16
27 H 0.04 0.94 7.74 -51.93 -0.40 0.54 16
28 H 0.01 0.24 7.61 -51.93 -0.39 -0.15 16
29 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16
30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16
31 H 0.33 7.67 8.13 -39.29 -0.32 7.35 16
32 H 0.08 1.53 7.61 -51.93 -0.40 1.13 16
33 H 0.03 0.68 7.94 -51.93 -0.41 0.27 16
34 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16
35 H 0.17 1.50 6.91 -52.49 -0.36 1.14 16
36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16
37 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16
38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16
41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16
44 H 0.08 0.91 7.92 -51.93 -0.41 0.49 16
LS Contribution 348.26 15.07 5.25 5.25
Total: -1.00 -30.21 348.26 -9.38 -39.59
By element:
Atomic # 1 Polarization: 12.59 SS G_CDS: -7.43 Total: 5.16 kcal
Atomic # 6 Polarization: -13.26 SS G_CDS: -2.43 Total: -15.69 kcal
Atomic # 7 Polarization: -51.11 SS G_CDS: 0.25 Total: -50.86 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -30.21 -9.38 -39.59 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000565170861.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.974 kcal
(2) G-P(sol) polarization free energy of solvation -30.206 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds