Wall clock time and date at job start Mon Mar 30 2020 01:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47059 * 2 1 4 4 H 1.09001 * 109.47038 * 179.82353 * 3 2 1 5 5 C 1.50697 * 109.47060 * 299.82769 * 3 2 1 6 6 H 1.08000 * 120.00174 * 120.00139 * 5 3 2 7 7 C 1.37875 * 119.99982 * 299.99524 * 5 3 2 8 8 N 1.31510 * 120.00249 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00173 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46989 * 60.00384 * 9 7 5 11 11 H 1.48498 * 109.47254 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47539 * 300.00659 * 9 7 5 13 13 N 1.46909 * 109.47291 * 59.82669 * 3 2 1 14 14 C 1.46899 * 110.99562 * 85.92764 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54549 * 14 13 3 16 16 C 1.39871 * 125.89568 * 94.71741 * 15 14 13 17 17 C 1.35321 * 107.92005 * 179.86245 * 16 15 14 18 18 N 1.34957 * 107.74224 * 0.39497 * 17 16 15 19 19 C 1.46497 * 126.03546 * 179.75322 * 18 17 16 20 20 C 1.54266 * 110.03426 * 32.88133 * 19 18 17 21 21 C 1.54968 * 104.15927 * 217.13994 * 20 19 18 22 22 C 1.54888 * 102.77973 * 37.88708 * 21 20 19 23 23 C 1.53878 * 110.02913 * 275.66805 * 19 18 17 24 24 N 1.30840 * 125.89982 * 275.02343 * 15 14 13 25 25 H 1.09001 * 109.47026 * 175.59526 * 1 2 3 26 26 H 1.08992 * 109.47147 * 55.58766 * 1 2 3 27 27 H 1.09005 * 109.46940 * 295.58523 * 1 2 3 28 28 H 1.09003 * 109.46724 * 120.00103 * 2 1 3 29 29 H 1.08999 * 109.47203 * 239.99943 * 2 1 3 30 30 H 0.97002 * 120.00745 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99633 * 209.88487 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54380 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.55056 * 14 13 3 34 34 H 1.07998 * 126.04143 * 359.97438 * 16 15 14 35 35 H 1.07991 * 126.12981 * 180.14783 * 17 16 15 36 36 H 1.08994 * 110.01959 * 154.27549 * 19 18 17 37 37 H 1.09007 * 110.48623 * 335.78546 * 20 19 18 38 38 H 1.08994 * 110.48768 * 98.42919 * 20 19 18 39 39 H 1.09000 * 110.71977 * 279.57037 * 21 20 19 40 40 H 1.09005 * 110.76478 * 156.22103 * 21 20 19 41 41 H 1.08996 * 110.48865 * 203.40464 * 22 21 20 42 42 H 1.08999 * 110.59824 * 80.81657 * 22 21 20 43 43 H 1.09007 * 110.02546 * 238.56948 * 23 19 18 44 44 H 1.09001 * 110.03262 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5412 2.1516 -1.2326 6 1 0.9200 3.0298 -1.1362 7 6 1.8779 1.6793 -2.4834 8 7 2.6340 0.6098 -2.6009 9 14 1.2590 2.5579 -4.0113 10 1 1.7534 3.9582 -4.0115 11 1 1.7571 1.8564 -5.2216 12 1 -0.2260 2.5574 -4.0154 13 7 1.5469 2.1362 1.1974 14 6 2.4393 1.9095 2.3420 15 6 1.9631 2.7219 3.5187 16 6 1.1270 2.2681 4.5440 17 6 0.9355 3.2912 5.4087 18 7 1.6189 4.3574 4.9421 19 6 1.6833 5.6807 5.5673 20 6 1.6151 5.5438 7.1023 21 6 0.7691 6.7611 7.5542 22 6 -0.3003 6.8681 6.4389 23 6 0.4662 6.5225 5.1455 24 7 2.2559 3.9751 3.7545 25 1 -0.3633 -1.0246 -0.0789 26 1 -0.3633 0.5807 -0.8477 27 1 -0.3633 0.4438 0.9269 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.8706 0.2772 -3.4809 31 1 1.4287 3.1226 1.0208 32 1 2.4322 0.8515 2.6043 33 1 3.4527 2.2117 2.0782 34 1 0.7097 1.2758 4.6314 35 1 0.3392 3.2613 6.3085 36 1 2.6049 6.1856 5.2780 37 1 1.1221 4.6124 7.3808 38 1 2.6146 5.5915 7.5343 39 1 1.3801 7.6629 7.5914 40 1 0.3018 6.5697 8.5203 41 1 -0.6979 7.8816 6.3875 42 1 -1.1044 6.1520 6.6086 43 1 0.7974 7.4365 4.6523 44 1 -0.1720 5.9466 4.4753 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565170861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:45 Heat of formation + Delta-G solvation = 63.389230 kcal Electronic energy + Delta-G solvation = -21465.721453 eV Core-core repulsion = 18418.977721 eV Total energy + Delta-G solvation = -3046.743733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09457 -38.19232 -36.17776 -33.17911 -31.71627 -30.48497 -29.83884 -29.05859 -27.89894 -26.26230 -24.15681 -22.99131 -22.02592 -20.94978 -19.70281 -19.39299 -18.87571 -17.36228 -16.37276 -15.99069 -14.88050 -14.85083 -14.46338 -14.28010 -14.01941 -13.70378 -13.26634 -13.09998 -12.95313 -12.57154 -12.17624 -11.99063 -11.74945 -11.58135 -11.52797 -11.50879 -11.23238 -11.07711 -10.94029 -10.85993 -10.72780 -10.32697 -10.29238 -10.03824 -9.63905 -9.31302 -8.97746 -8.70562 -8.39995 -8.27419 -7.14361 -5.95781 -4.00782 2.12202 2.62526 3.13304 3.35455 3.39539 3.42859 4.05616 4.19065 4.46017 4.49977 4.85233 4.89969 4.96014 5.05321 5.09728 5.16790 5.23475 5.35124 5.42039 5.50093 5.65464 5.67853 5.68637 5.79261 5.89976 5.91155 6.04113 6.21090 6.32005 6.48204 6.62086 6.76107 6.93688 6.98915 7.26655 7.31633 7.38516 7.56935 7.82426 7.85926 7.91715 8.06769 8.34366 8.46796 8.73919 9.08268 9.63455 11.10144 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.003505 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.474271 B = 7985.741711 C = 8553.478620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.002 0.998 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.677 5.677 14 C 0.138 3.862 15 C 0.092 3.908 16 C -0.252 4.252 17 C 0.042 3.958 18 N -0.372 5.372 19 C 0.160 3.840 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.138 4.138 24 N -0.295 5.295 25 H 0.013 0.987 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.011 0.989 29 H 0.086 0.914 30 H 0.261 0.739 31 H 0.333 0.667 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.145 0.855 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 8.965 20.260 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.309 5.309 14 C 0.007 3.993 15 C -0.075 4.075 16 C -0.282 4.282 17 C -0.103 4.103 18 N -0.154 5.154 19 C 0.057 3.943 20 C -0.174 4.174 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.177 4.177 24 N -0.117 5.117 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.162 0.838 35 H 0.182 0.818 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.299 9.490 19.935 22.324 hybrid contribution -0.058 0.261 -0.798 0.841 sum -3.357 9.751 19.138 21.739 Atomic orbital electron populations 1.21447 0.97542 0.97324 1.01365 1.21435 0.95025 0.98183 0.99464 1.19164 0.93033 0.91485 0.85455 0.98064 1.21151 1.31561 1.11909 0.90350 0.92411 1.24869 0.95081 0.95023 0.98839 1.69871 1.36711 1.22715 1.23534 0.86640 0.79238 0.79661 0.82342 1.20410 1.21367 1.20233 1.60770 1.48238 1.16250 1.05644 1.20304 0.94396 0.97073 0.87537 1.22521 0.96478 0.91599 0.96927 1.21381 1.08183 1.01019 0.97630 1.22270 0.99462 0.87997 1.00590 1.48736 1.38423 1.09387 1.18870 1.21876 1.00364 0.80050 0.91968 1.22832 1.01561 1.00007 0.93009 1.22486 0.97127 0.97701 0.98648 1.22370 0.97840 1.01912 0.94073 1.22630 0.96423 1.00208 0.98404 1.77361 1.20180 1.14469 0.99726 0.96838 0.92587 0.93902 0.97076 0.89535 0.92943 0.84963 0.90078 0.94849 0.83770 0.81764 0.88119 0.90212 0.90407 0.90931 0.90851 0.91121 0.91320 0.90437 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.52 37.16 0.35 -2.39 16 2 C -0.10 -2.53 5.59 -26.73 -0.15 -2.68 16 3 C 0.22 5.51 2.30 -68.86 -0.16 5.35 16 4 H 0.00 0.05 7.71 -51.93 -0.40 -0.35 16 5 C -0.51 -14.08 7.26 -34.44 -0.25 -14.33 16 6 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 7 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 8 N -0.89 -25.50 11.32 55.43 0.63 -24.88 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 N -0.68 -15.09 5.64 -109.22 -0.62 -15.70 16 14 C 0.14 2.71 6.10 -4.97 -0.03 2.68 16 15 C 0.09 1.65 6.68 -82.40 -0.55 1.10 16 16 C -0.25 -3.88 10.74 -40.01 -0.43 -4.31 16 17 C 0.04 0.54 10.43 -17.22 -0.18 0.36 16 18 N -0.37 -5.21 3.44 -53.78 -0.19 -5.40 16 19 C 0.16 1.66 4.00 -66.81 -0.27 1.39 16 20 C -0.14 -1.01 6.38 -25.03 -0.16 -1.17 16 21 C -0.12 -0.71 6.91 -24.70 -0.17 -0.88 16 22 C -0.12 -0.86 6.83 -25.08 -0.17 -1.03 16 23 C -0.14 -1.30 6.59 -25.61 -0.17 -1.47 16 24 N -0.30 -5.30 12.58 33.67 0.42 -4.88 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 1.39 7.07 -51.93 -0.37 1.02 16 27 H 0.04 0.94 7.74 -51.93 -0.40 0.54 16 28 H 0.01 0.24 7.61 -51.93 -0.39 -0.15 16 29 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.33 7.67 8.13 -39.29 -0.32 7.35 16 32 H 0.08 1.53 7.61 -51.93 -0.40 1.13 16 33 H 0.03 0.68 7.94 -51.93 -0.41 0.27 16 34 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 35 H 0.17 1.50 6.91 -52.49 -0.36 1.14 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.91 7.92 -51.93 -0.41 0.49 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -30.21 348.26 -9.38 -39.59 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.43 Total: 5.16 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.43 Total: -15.69 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.25 Total: -50.86 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.21 -9.38 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565170861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.974 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds