Wall clock time and date at job start Mon Mar 30 2020 01:48:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52995 * 109.47059 * 2 1
4 4 H 1.09001 * 109.47038 * 179.82353 * 3 2 1
5 5 C 1.50697 * 109.47060 * 299.82769 * 3 2 1
6 6 H 1.08000 * 120.00174 * 120.00139 * 5 3 2
7 7 C 1.37875 * 119.99982 * 299.99524 * 5 3 2
8 8 N 1.31510 * 120.00249 * 0.02562 * 7 5 3
9 9 Si 1.86799 * 120.00173 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.46989 * 60.00384 * 9 7 5
11 11 H 1.48498 * 109.47254 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.47539 * 300.00659 * 9 7 5
13 13 N 1.46909 * 109.47291 * 59.82669 * 3 2 1
14 14 C 1.46899 * 110.99562 * 85.92764 * 13 3 2
15 15 C 1.50704 * 109.46488 * 175.54549 * 14 13 3
16 16 C 1.39871 * 125.89568 * 94.71741 * 15 14 13
17 17 C 1.35321 * 107.92005 * 179.86245 * 16 15 14
18 18 N 1.34957 * 107.74224 * 0.39497 * 17 16 15
19 19 C 1.46497 * 126.03546 * 179.75322 * 18 17 16
20 20 C 1.54266 * 110.03426 * 32.88133 * 19 18 17
21 21 C 1.54968 * 104.15927 * 217.13994 * 20 19 18
22 22 C 1.54888 * 102.77973 * 37.88708 * 21 20 19
23 23 C 1.53878 * 110.02913 * 275.66805 * 19 18 17
24 24 N 1.30840 * 125.89982 * 275.02343 * 15 14 13
25 25 H 1.09001 * 109.47026 * 175.59526 * 1 2 3
26 26 H 1.08992 * 109.47147 * 55.58766 * 1 2 3
27 27 H 1.09005 * 109.46940 * 295.58523 * 1 2 3
28 28 H 1.09003 * 109.46724 * 120.00103 * 2 1 3
29 29 H 1.08999 * 109.47203 * 239.99943 * 2 1 3
30 30 H 0.97002 * 120.00745 * 179.97438 * 8 7 5
31 31 H 1.00896 * 110.99633 * 209.88487 * 13 3 2
32 32 H 1.08995 * 109.47219 * 295.54380 * 14 13 3
33 33 H 1.08999 * 109.47280 * 55.55056 * 14 13 3
34 34 H 1.07998 * 126.04143 * 359.97438 * 16 15 14
35 35 H 1.07991 * 126.12981 * 180.14783 * 17 16 15
36 36 H 1.08994 * 110.01959 * 154.27549 * 19 18 17
37 37 H 1.09007 * 110.48623 * 335.78546 * 20 19 18
38 38 H 1.08994 * 110.48768 * 98.42919 * 20 19 18
39 39 H 1.09000 * 110.71977 * 279.57037 * 21 20 19
40 40 H 1.09005 * 110.76478 * 156.22103 * 21 20 19
41 41 H 1.08996 * 110.48865 * 203.40464 * 22 21 20
42 42 H 1.08999 * 110.59824 * 80.81657 * 22 21 20
43 43 H 1.09007 * 110.02546 * 238.56948 * 23 19 18
44 44 H 1.09001 * 110.03262 * 359.97438 * 23 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1300 1.4425 0.0032
5 6 1.5412 2.1516 -1.2326
6 1 0.9200 3.0298 -1.1362
7 6 1.8779 1.6793 -2.4834
8 7 2.6340 0.6098 -2.6009
9 14 1.2590 2.5579 -4.0113
10 1 1.7534 3.9582 -4.0115
11 1 1.7571 1.8564 -5.2216
12 1 -0.2260 2.5574 -4.0154
13 7 1.5469 2.1362 1.1974
14 6 2.4393 1.9095 2.3420
15 6 1.9631 2.7219 3.5187
16 6 1.1270 2.2681 4.5440
17 6 0.9355 3.2912 5.4087
18 7 1.6189 4.3574 4.9421
19 6 1.6833 5.6807 5.5673
20 6 1.6151 5.5438 7.1023
21 6 0.7691 6.7611 7.5542
22 6 -0.3003 6.8681 6.4389
23 6 0.4662 6.5225 5.1455
24 7 2.2559 3.9751 3.7545
25 1 -0.3633 -1.0246 -0.0789
26 1 -0.3633 0.5807 -0.8477
27 1 -0.3633 0.4438 0.9269
28 1 1.8933 -0.5139 0.8900
29 1 1.8934 -0.5138 -0.8900
30 1 2.8706 0.2772 -3.4809
31 1 1.4287 3.1226 1.0208
32 1 2.4322 0.8515 2.6043
33 1 3.4527 2.2117 2.0782
34 1 0.7097 1.2758 4.6314
35 1 0.3392 3.2613 6.3085
36 1 2.6049 6.1856 5.2780
37 1 1.1221 4.6124 7.3808
38 1 2.6146 5.5915 7.5343
39 1 1.3801 7.6629 7.5914
40 1 0.3018 6.5697 8.5203
41 1 -0.6979 7.8816 6.3875
42 1 -1.1044 6.1520 6.6086
43 1 0.7974 7.4365 4.6523
44 1 -0.1720 5.9466 4.4753
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000565170861.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:48:44
Heat of formation + Delta-G solvation = 45.667195 kcal
Electronic energy + Delta-G solvation = -21466.489938 eV
Core-core repulsion = 18418.977721 eV
Total energy + Delta-G solvation = -3047.512218 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.185 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.22839 -38.98855 -38.02340 -34.88170 -33.30267 -32.09808 -31.01618 -29.72576
-29.26401 -27.84918 -25.83177 -24.90446 -22.96280 -21.62362 -21.04731 -20.66803
-20.45530 -18.48510 -18.11168 -16.91659 -16.78684 -15.96054 -15.76640 -15.62709
-15.44812 -14.96301 -14.81246 -14.31857 -14.13756 -14.02963 -13.85954 -13.27294
-13.12750 -12.91258 -12.77581 -12.63850 -12.51233 -12.39260 -12.11620 -12.03637
-11.95818 -11.79081 -11.65572 -11.49998 -11.45023 -11.26472 -10.80525 -10.53309
-10.19377 -9.43295 -9.02709 -8.09310 -6.21723 0.97920 1.41849 1.43304
1.50750 1.60755 1.86094 2.43193 3.18827 3.34306 3.55242 3.71374
3.86309 3.92863 3.95489 4.18599 4.34310 4.38490 4.45197 4.49664
4.62314 4.66743 4.70020 4.81504 4.82325 4.91797 4.93880 4.98656
5.00807 5.10849 5.18566 5.21254 5.23383 5.32743 5.40667 5.41216
5.57163 5.71071 5.73122 5.84188 5.91221 6.26397 6.29155 6.46046
6.74508 6.84449 6.98461 7.46377 8.95627
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.025884 B = 0.003505 C = 0.003273
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1081.474271 B = 7985.741711 C = 8553.478620
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.098 4.098
3 C 0.222 3.778
4 H -0.035 1.035
5 C -0.527 4.527
6 H 0.052 0.948
7 C 0.019 3.981
8 N -0.915 5.915
9 Si 0.955 3.045
10 H -0.275 1.275
11 H -0.283 1.283
12 H -0.271 1.271
13 N -0.668 5.668
14 C 0.145 3.855
15 C 0.070 3.930
16 C -0.273 4.273
17 C 0.062 3.938
18 N -0.365 5.365
19 C 0.147 3.853
20 C -0.129 4.129
21 C -0.113 4.113
22 C -0.119 4.119
23 C -0.136 4.136
24 N -0.337 5.337
25 H 0.035 0.965
26 H 0.033 0.967
27 H 0.051 0.949
28 H 0.025 0.975
29 H 0.060 0.940
30 H 0.262 0.738
31 H 0.326 0.674
32 H 0.088 0.912
33 H 0.016 0.984
34 H 0.157 0.843
35 H 0.210 0.790
36 H 0.092 0.908
37 H 0.087 0.913
38 H 0.084 0.916
39 H 0.080 0.920
40 H 0.092 0.908
41 H 0.081 0.919
42 H 0.072 0.928
43 H 0.077 0.923
44 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.182 9.855 22.472 25.079
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.136 4.136
3 C 0.114 3.886
4 H -0.018 1.018
5 C -0.566 4.566
6 H 0.070 0.930
7 C -0.181 4.181
8 N -0.554 5.554
9 Si 0.781 3.219
10 H -0.200 1.200
11 H -0.208 1.208
12 H -0.196 1.196
13 N -0.299 5.299
14 C 0.014 3.986
15 C -0.095 4.095
16 C -0.302 4.302
17 C -0.084 4.084
18 N -0.147 5.147
19 C 0.046 3.954
20 C -0.167 4.167
21 C -0.150 4.150
22 C -0.156 4.156
23 C -0.175 4.175
24 N -0.160 5.160
25 H 0.054 0.946
26 H 0.052 0.948
27 H 0.070 0.930
28 H 0.044 0.956
29 H 0.078 0.922
30 H 0.071 0.929
31 H 0.143 0.857
32 H 0.106 0.894
33 H 0.034 0.966
34 H 0.174 0.826
35 H 0.227 0.773
36 H 0.110 0.890
37 H 0.105 0.895
38 H 0.103 0.897
39 H 0.098 0.902
40 H 0.111 0.889
41 H 0.100 0.900
42 H 0.090 0.910
43 H 0.096 0.904
44 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -4.875 10.389 22.159 24.954
hybrid contribution 0.466 0.054 -1.399 1.476
sum -4.409 10.443 20.760 23.653
Atomic orbital electron populations
1.21299 0.95931 0.98416 1.00743 1.21309 0.96331 0.97197 0.98808
1.18984 0.90789 0.92473 0.86388 1.01766 1.21389 1.31657 1.11997
0.91512 0.92957 1.25608 0.95178 0.95674 1.01621 1.70002 1.37452
1.23775 1.24166 0.85663 0.78864 0.78572 0.78845 1.20036 1.20795
1.19597 1.60725 1.48551 1.15410 1.05167 1.20184 0.93034 0.97946
0.87463 1.22266 0.98123 0.91947 0.97213 1.21596 1.08545 1.02466
0.97618 1.22880 0.98041 0.86503 1.00950 1.49043 1.37296 1.10785
1.17584 1.22297 1.00489 0.78598 0.94041 1.22849 1.02543 1.01218
0.90109 1.22481 0.96471 0.97184 0.98911 1.22360 0.97900 1.02631
0.92745 1.22601 0.95858 0.99557 0.99482 1.77253 1.21933 1.14743
1.02104 0.94576 0.94799 0.93040 0.95638 0.92190 0.92886 0.85747
0.89380 0.96631 0.82551 0.77307 0.88981 0.89460 0.89724 0.90181
0.88916 0.90031 0.90965 0.90388 0.93121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.84 9.52 71.98 0.69 -4.15 16
2 C -0.10 -4.89 5.59 30.59 0.17 -4.72 16
3 C 0.22 11.71 2.30 44.16 0.10 11.81 16
4 H -0.04 -2.08 7.71 -2.39 -0.02 -2.09 16
5 C -0.53 -29.74 7.26 25.60 0.19 -29.56 16
6 H 0.05 2.95 7.60 -2.91 -0.02 2.92 16
7 C 0.02 1.05 5.30 84.65 0.45 1.50 16
8 N -0.91 -53.52 11.32 21.45 0.24 -53.28 16
9 Si 0.95 44.63 29.54 68.60 2.03 46.66 16
10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16
11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16
12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16
13 N -0.67 -30.65 5.64 -499.46 -2.82 -33.46 16
14 C 0.14 5.88 6.10 85.56 0.52 6.40 16
15 C 0.07 2.54 6.68 43.10 0.29 2.83 16
16 C -0.27 -8.07 10.74 21.99 0.24 -7.83 16
17 C 0.06 1.47 10.43 83.54 0.87 2.34 16
18 N -0.36 -9.86 3.44 -324.05 -1.12 -10.98 16
19 C 0.15 2.85 4.00 45.72 0.18 3.03 16
20 C -0.13 -1.51 6.38 31.70 0.20 -1.31 16
21 C -0.11 -0.90 6.91 31.91 0.22 -0.68 16
22 C -0.12 -1.30 6.83 31.67 0.22 -1.08 16
23 C -0.14 -2.41 6.59 31.32 0.21 -2.20 16
24 N -0.34 -12.30 12.58 -47.38 -0.60 -12.90 16
25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
26 H 0.03 1.66 7.07 -2.39 -0.02 1.64 16
27 H 0.05 2.21 7.74 -2.38 -0.02 2.20 16
28 H 0.02 1.16 7.61 -2.39 -0.02 1.14 16
29 H 0.06 3.34 6.06 -2.39 -0.01 3.32 16
30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16
31 H 0.33 15.61 8.13 -89.70 -0.73 14.88 16
32 H 0.09 3.39 7.61 -2.39 -0.02 3.37 16
33 H 0.02 0.68 7.94 -2.39 -0.02 0.66 16
34 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16
35 H 0.21 2.89 6.91 -2.92 -0.02 2.87 16
36 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16
37 H 0.09 0.91 5.96 -2.38 -0.01 0.90 16
38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16
40 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16
41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16
42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
43 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16
44 H 0.05 1.17 7.92 -2.39 -0.02 1.15 16
Total: -1.00 -66.96 348.26 2.52 -64.44
By element:
Atomic # 1 Polarization: 22.90 SS G_CDS: 0.24 Total: 23.14 kcal
Atomic # 6 Polarization: -28.15 SS G_CDS: 4.54 Total: -23.61 kcal
Atomic # 7 Polarization: -106.34 SS G_CDS: -4.28 Total: -110.62 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal
Total: -66.96 2.52 -64.44 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000565170861.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.103 kcal
(2) G-P(sol) polarization free energy of solvation -66.959 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.667 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds