Wall clock time and date at job start Mon Mar 30 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47059 * 2 1 4 4 H 1.09001 * 109.47038 * 179.82353 * 3 2 1 5 5 C 1.50697 * 109.47060 * 299.82769 * 3 2 1 6 6 H 1.08000 * 120.00174 * 120.00139 * 5 3 2 7 7 C 1.37875 * 119.99982 * 299.99524 * 5 3 2 8 8 N 1.31510 * 120.00249 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00173 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46989 * 60.00384 * 9 7 5 11 11 H 1.48498 * 109.47254 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47539 * 300.00659 * 9 7 5 13 13 N 1.46909 * 109.47291 * 59.82669 * 3 2 1 14 14 C 1.46899 * 110.99562 * 85.92764 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54549 * 14 13 3 16 16 C 1.39871 * 125.89568 * 94.71741 * 15 14 13 17 17 C 1.35321 * 107.92005 * 179.86245 * 16 15 14 18 18 N 1.34957 * 107.74224 * 0.39497 * 17 16 15 19 19 C 1.46497 * 126.03546 * 179.75322 * 18 17 16 20 20 C 1.54266 * 110.03426 * 32.88133 * 19 18 17 21 21 C 1.54968 * 104.15927 * 217.13994 * 20 19 18 22 22 C 1.54888 * 102.77973 * 37.88708 * 21 20 19 23 23 C 1.53878 * 110.02913 * 275.66805 * 19 18 17 24 24 N 1.30840 * 125.89982 * 275.02343 * 15 14 13 25 25 H 1.09001 * 109.47026 * 175.59526 * 1 2 3 26 26 H 1.08992 * 109.47147 * 55.58766 * 1 2 3 27 27 H 1.09005 * 109.46940 * 295.58523 * 1 2 3 28 28 H 1.09003 * 109.46724 * 120.00103 * 2 1 3 29 29 H 1.08999 * 109.47203 * 239.99943 * 2 1 3 30 30 H 0.97002 * 120.00745 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99633 * 209.88487 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54380 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.55056 * 14 13 3 34 34 H 1.07998 * 126.04143 * 359.97438 * 16 15 14 35 35 H 1.07991 * 126.12981 * 180.14783 * 17 16 15 36 36 H 1.08994 * 110.01959 * 154.27549 * 19 18 17 37 37 H 1.09007 * 110.48623 * 335.78546 * 20 19 18 38 38 H 1.08994 * 110.48768 * 98.42919 * 20 19 18 39 39 H 1.09000 * 110.71977 * 279.57037 * 21 20 19 40 40 H 1.09005 * 110.76478 * 156.22103 * 21 20 19 41 41 H 1.08996 * 110.48865 * 203.40464 * 22 21 20 42 42 H 1.08999 * 110.59824 * 80.81657 * 22 21 20 43 43 H 1.09007 * 110.02546 * 238.56948 * 23 19 18 44 44 H 1.09001 * 110.03262 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5412 2.1516 -1.2326 6 1 0.9200 3.0298 -1.1362 7 6 1.8779 1.6793 -2.4834 8 7 2.6340 0.6098 -2.6009 9 14 1.2590 2.5579 -4.0113 10 1 1.7534 3.9582 -4.0115 11 1 1.7571 1.8564 -5.2216 12 1 -0.2260 2.5574 -4.0154 13 7 1.5469 2.1362 1.1974 14 6 2.4393 1.9095 2.3420 15 6 1.9631 2.7219 3.5187 16 6 1.1270 2.2681 4.5440 17 6 0.9355 3.2912 5.4087 18 7 1.6189 4.3574 4.9421 19 6 1.6833 5.6807 5.5673 20 6 1.6151 5.5438 7.1023 21 6 0.7691 6.7611 7.5542 22 6 -0.3003 6.8681 6.4389 23 6 0.4662 6.5225 5.1455 24 7 2.2559 3.9751 3.7545 25 1 -0.3633 -1.0246 -0.0789 26 1 -0.3633 0.5807 -0.8477 27 1 -0.3633 0.4438 0.9269 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.8706 0.2772 -3.4809 31 1 1.4287 3.1226 1.0208 32 1 2.4322 0.8515 2.6043 33 1 3.4527 2.2117 2.0782 34 1 0.7097 1.2758 4.6314 35 1 0.3392 3.2613 6.3085 36 1 2.6049 6.1856 5.2780 37 1 1.1221 4.6124 7.3808 38 1 2.6146 5.5915 7.5343 39 1 1.3801 7.6629 7.5914 40 1 0.3018 6.5697 8.5203 41 1 -0.6979 7.8816 6.3875 42 1 -1.1044 6.1520 6.6086 43 1 0.7974 7.4365 4.6523 44 1 -0.1720 5.9466 4.4753 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565170861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:44 Heat of formation + Delta-G solvation = 45.667195 kcal Electronic energy + Delta-G solvation = -21466.489938 eV Core-core repulsion = 18418.977721 eV Total energy + Delta-G solvation = -3047.512218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.22839 -38.98855 -38.02340 -34.88170 -33.30267 -32.09808 -31.01618 -29.72576 -29.26401 -27.84918 -25.83177 -24.90446 -22.96280 -21.62362 -21.04731 -20.66803 -20.45530 -18.48510 -18.11168 -16.91659 -16.78684 -15.96054 -15.76640 -15.62709 -15.44812 -14.96301 -14.81246 -14.31857 -14.13756 -14.02963 -13.85954 -13.27294 -13.12750 -12.91258 -12.77581 -12.63850 -12.51233 -12.39260 -12.11620 -12.03637 -11.95818 -11.79081 -11.65572 -11.49998 -11.45023 -11.26472 -10.80525 -10.53309 -10.19377 -9.43295 -9.02709 -8.09310 -6.21723 0.97920 1.41849 1.43304 1.50750 1.60755 1.86094 2.43193 3.18827 3.34306 3.55242 3.71374 3.86309 3.92863 3.95489 4.18599 4.34310 4.38490 4.45197 4.49664 4.62314 4.66743 4.70020 4.81504 4.82325 4.91797 4.93880 4.98656 5.00807 5.10849 5.18566 5.21254 5.23383 5.32743 5.40667 5.41216 5.57163 5.71071 5.73122 5.84188 5.91221 6.26397 6.29155 6.46046 6.74508 6.84449 6.98461 7.46377 8.95627 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.003505 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.474271 B = 7985.741711 C = 8553.478620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C 0.222 3.778 4 H -0.035 1.035 5 C -0.527 4.527 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.668 5.668 14 C 0.145 3.855 15 C 0.070 3.930 16 C -0.273 4.273 17 C 0.062 3.938 18 N -0.365 5.365 19 C 0.147 3.853 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.136 4.136 24 N -0.337 5.337 25 H 0.035 0.965 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.262 0.738 31 H 0.326 0.674 32 H 0.088 0.912 33 H 0.016 0.984 34 H 0.157 0.843 35 H 0.210 0.790 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 9.855 22.472 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.114 3.886 4 H -0.018 1.018 5 C -0.566 4.566 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.196 1.196 13 N -0.299 5.299 14 C 0.014 3.986 15 C -0.095 4.095 16 C -0.302 4.302 17 C -0.084 4.084 18 N -0.147 5.147 19 C 0.046 3.954 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.175 4.175 24 N -0.160 5.160 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.106 0.894 33 H 0.034 0.966 34 H 0.174 0.826 35 H 0.227 0.773 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.875 10.389 22.159 24.954 hybrid contribution 0.466 0.054 -1.399 1.476 sum -4.409 10.443 20.760 23.653 Atomic orbital electron populations 1.21299 0.95931 0.98416 1.00743 1.21309 0.96331 0.97197 0.98808 1.18984 0.90789 0.92473 0.86388 1.01766 1.21389 1.31657 1.11997 0.91512 0.92957 1.25608 0.95178 0.95674 1.01621 1.70002 1.37452 1.23775 1.24166 0.85663 0.78864 0.78572 0.78845 1.20036 1.20795 1.19597 1.60725 1.48551 1.15410 1.05167 1.20184 0.93034 0.97946 0.87463 1.22266 0.98123 0.91947 0.97213 1.21596 1.08545 1.02466 0.97618 1.22880 0.98041 0.86503 1.00950 1.49043 1.37296 1.10785 1.17584 1.22297 1.00489 0.78598 0.94041 1.22849 1.02543 1.01218 0.90109 1.22481 0.96471 0.97184 0.98911 1.22360 0.97900 1.02631 0.92745 1.22601 0.95858 0.99557 0.99482 1.77253 1.21933 1.14743 1.02104 0.94576 0.94799 0.93040 0.95638 0.92190 0.92886 0.85747 0.89380 0.96631 0.82551 0.77307 0.88981 0.89460 0.89724 0.90181 0.88916 0.90031 0.90965 0.90388 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.84 9.52 71.98 0.69 -4.15 16 2 C -0.10 -4.89 5.59 30.59 0.17 -4.72 16 3 C 0.22 11.71 2.30 44.16 0.10 11.81 16 4 H -0.04 -2.08 7.71 -2.39 -0.02 -2.09 16 5 C -0.53 -29.74 7.26 25.60 0.19 -29.56 16 6 H 0.05 2.95 7.60 -2.91 -0.02 2.92 16 7 C 0.02 1.05 5.30 84.65 0.45 1.50 16 8 N -0.91 -53.52 11.32 21.45 0.24 -53.28 16 9 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.67 -30.65 5.64 -499.46 -2.82 -33.46 16 14 C 0.14 5.88 6.10 85.56 0.52 6.40 16 15 C 0.07 2.54 6.68 43.10 0.29 2.83 16 16 C -0.27 -8.07 10.74 21.99 0.24 -7.83 16 17 C 0.06 1.47 10.43 83.54 0.87 2.34 16 18 N -0.36 -9.86 3.44 -324.05 -1.12 -10.98 16 19 C 0.15 2.85 4.00 45.72 0.18 3.03 16 20 C -0.13 -1.51 6.38 31.70 0.20 -1.31 16 21 C -0.11 -0.90 6.91 31.91 0.22 -0.68 16 22 C -0.12 -1.30 6.83 31.67 0.22 -1.08 16 23 C -0.14 -2.41 6.59 31.32 0.21 -2.20 16 24 N -0.34 -12.30 12.58 -47.38 -0.60 -12.90 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.03 1.66 7.07 -2.39 -0.02 1.64 16 27 H 0.05 2.21 7.74 -2.38 -0.02 2.20 16 28 H 0.02 1.16 7.61 -2.39 -0.02 1.14 16 29 H 0.06 3.34 6.06 -2.39 -0.01 3.32 16 30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.33 15.61 8.13 -89.70 -0.73 14.88 16 32 H 0.09 3.39 7.61 -2.39 -0.02 3.37 16 33 H 0.02 0.68 7.94 -2.39 -0.02 0.66 16 34 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.21 2.89 6.91 -2.92 -0.02 2.87 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.09 0.91 5.96 -2.38 -0.01 0.90 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.05 1.17 7.92 -2.39 -0.02 1.15 16 Total: -1.00 -66.96 348.26 2.52 -64.44 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.24 Total: 23.14 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.54 Total: -23.61 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -4.28 Total: -110.62 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -66.96 2.52 -64.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565170861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.103 kcal (2) G-P(sol) polarization free energy of solvation -66.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds