Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00081 * 2 1 4 4 C 1.46897 * 111.00192 * 123.95675 * 2 1 3 5 5 C 1.53000 * 109.47464 * 169.99613 * 4 2 1 6 6 N 1.46894 * 109.47378 * 182.45915 * 5 4 2 7 7 C 1.46905 * 111.00177 * 61.67177 * 6 5 4 8 8 C 1.52997 * 109.46822 * 66.04099 * 7 6 5 9 9 C 1.50698 * 109.47250 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00099 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00320 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99834 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99755 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46831 * 90.00593 * 13 11 9 15 15 H 1.48498 * 109.47000 * 210.00245 * 13 11 9 16 16 H 1.48495 * 109.47416 * 330.00630 * 13 11 9 17 17 C 1.46900 * 111.00424 * 297.72009 * 6 5 4 18 18 C 1.50699 * 109.46811 * 288.47588 * 17 6 5 19 19 C 1.38232 * 119.62033 * 94.00624 * 18 17 6 20 20 C 1.38623 * 119.16327 * 179.97438 * 19 18 17 21 21 C 1.38664 * 118.42262 * 359.97438 * 20 19 18 22 22 C 1.38185 * 119.16488 * 0.02562 * 21 20 19 23 23 N 1.31855 * 119.62157 * 273.97528 * 18 17 6 24 24 H 1.09003 * 109.46683 * 296.04351 * 1 2 3 25 25 H 1.08997 * 109.47615 * 56.04217 * 1 2 3 26 26 H 1.08999 * 109.47354 * 176.04648 * 1 2 3 27 27 H 1.09002 * 109.47038 * 183.94791 * 3 2 1 28 28 H 1.08990 * 109.47354 * 303.95701 * 3 2 1 29 29 H 1.09001 * 109.46786 * 63.96116 * 3 2 1 30 30 H 1.09004 * 109.47076 * 49.99563 * 4 2 1 31 31 H 1.09000 * 109.47322 * 289.99810 * 4 2 1 32 32 H 1.09005 * 109.46912 * 62.46172 * 5 4 2 33 33 H 1.08994 * 109.47167 * 302.46739 * 5 4 2 34 34 H 1.08997 * 109.47668 * 186.04369 * 7 6 5 35 35 H 1.09005 * 109.47009 * 306.05211 * 7 6 5 36 36 H 1.09002 * 109.47655 * 300.00678 * 8 7 6 37 37 H 1.09009 * 109.46873 * 60.00588 * 8 7 6 38 38 H 0.96997 * 119.99542 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47362 * 168.47852 * 17 6 5 40 40 H 1.08998 * 109.47136 * 48.47465 * 17 6 5 41 41 H 1.07996 * 120.41547 * 359.94545 * 19 18 17 42 42 H 1.08008 * 120.78938 * 180.02562 * 20 19 18 43 43 H 1.08007 * 120.42168 * 179.97438 * 21 20 19 44 44 H 1.07999 * 119.62105 * 180.27616 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9555 0.9702 6 7 4.0212 -1.7714 2.0770 7 6 3.4094 -3.1070 2.0769 8 6 3.8499 -3.8695 0.8257 9 6 3.2218 -5.2394 0.8252 10 1 2.5729 -5.5363 1.6359 11 6 3.4755 -6.1137 -0.2103 12 7 2.9269 -7.3090 -0.2110 13 14 4.5972 -5.6000 -1.6129 14 1 5.9981 -5.9698 -1.2871 15 1 4.1799 -6.2913 -2.8591 16 1 4.5056 -4.1307 -1.8074 17 6 3.8168 -1.0990 3.3670 18 6 4.7551 0.0752 3.4756 19 6 4.3217 1.3331 3.1007 20 6 5.1925 2.4066 3.2049 21 6 6.4724 2.1739 3.6851 22 6 6.8350 0.8888 4.0406 23 7 5.9800 -0.1090 3.9277 24 1 -0.3633 0.4512 0.9234 25 1 -0.3634 0.5740 -0.8523 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5898 1.9163 -0.8523 29 1 1.7045 1.8723 0.9234 30 1 1.5089 -1.7407 1.1755 31 1 1.7976 -0.2249 2.0628 32 1 3.9956 0.0176 0.9761 33 1 3.7048 -1.4578 0.0240 34 1 3.7271 -3.6524 2.9655 35 1 2.3237 -3.0093 2.0792 36 1 3.5322 -3.3241 -0.0630 37 1 4.9356 -3.9673 0.8233 38 1 3.1051 -7.9240 -0.9397 39 1 4.0164 -1.7998 4.1777 40 1 2.7869 -0.7486 3.4349 41 1 3.3174 1.4776 2.7307 42 1 4.8812 3.4008 2.9198 43 1 7.1774 2.9868 3.7792 44 1 7.8285 0.7000 4.4197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569138824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = 51.423543 kcal Electronic energy + Delta-G solvation = -22052.596860 eV Core-core repulsion = 19005.334256 eV Total energy + Delta-G solvation = -3047.262604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34055 -38.47175 -36.35599 -33.20917 -32.53929 -31.86524 -30.12768 -28.85647 -27.60042 -26.16467 -24.79315 -23.55266 -22.90727 -21.86199 -20.86566 -19.10972 -16.91989 -16.81176 -16.46635 -16.03234 -15.62595 -15.36844 -14.92720 -14.77148 -14.09312 -13.94904 -13.68142 -13.42966 -13.28496 -13.07293 -12.61843 -12.49301 -12.36590 -12.10238 -11.73041 -11.70881 -11.53313 -11.50280 -11.16207 -10.87203 -10.52997 -10.06731 -9.95708 -9.73886 -9.65968 -9.36142 -9.14346 -9.03863 -8.46420 -8.37156 -7.77781 -5.98506 -3.96064 1.04139 1.23375 3.39374 3.45769 3.52439 3.68872 3.95333 4.26368 4.52591 4.53211 4.72750 4.77085 4.94445 5.03265 5.06482 5.14225 5.22715 5.28567 5.37016 5.41695 5.44145 5.52382 5.59691 5.63263 5.68696 5.82458 5.85961 5.89964 5.95849 6.03052 6.07719 6.16149 6.42947 6.45024 6.63414 6.80259 7.00528 7.03424 7.20612 7.36667 7.61140 7.64623 7.90054 8.05169 8.58509 9.05454 9.64732 11.14865 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.005314 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.122707 B = 5267.752581 C = 6457.397031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.023 3.977 4 C 0.016 3.984 5 C 0.054 3.946 6 N -0.525 5.525 7 C 0.069 3.931 8 C -0.007 4.007 9 C -0.519 4.519 10 H 0.070 0.930 11 C 0.069 3.931 12 N -0.905 5.905 13 Si 0.879 3.121 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.264 1.264 17 C 0.093 3.907 18 C 0.152 3.848 19 C -0.170 4.170 20 C -0.077 4.077 21 C -0.183 4.183 22 C 0.101 3.899 23 N -0.465 5.465 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.020 0.980 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 22.539 5.790 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.074 4.074 6 N -0.248 5.248 7 C -0.058 4.058 8 C -0.044 4.044 9 C -0.557 4.557 10 H 0.088 0.912 11 C -0.132 4.132 12 N -0.544 5.544 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.188 1.188 17 C -0.035 4.035 18 C 0.014 3.986 19 C -0.191 4.191 20 C -0.103 4.103 21 C -0.203 4.203 22 C -0.057 4.057 23 N -0.175 5.175 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.800 21.215 5.439 21.975 hybrid contribution -0.834 1.599 -0.197 1.814 sum 0.965 22.813 5.242 23.428 Atomic orbital electron populations 1.22386 0.87412 1.02630 0.99886 1.61902 1.07739 1.13333 1.43397 1.22446 1.01144 0.89100 0.99891 1.22930 0.98804 0.98943 0.90684 1.22263 0.90841 0.97834 0.96493 1.62317 1.58231 1.03470 1.00811 1.22237 0.95894 0.86045 1.01586 1.19565 0.96965 0.95259 0.92642 1.21061 1.29350 0.96898 1.08396 0.91185 1.24964 0.95617 0.94667 0.97967 1.69916 1.44647 1.06954 1.32923 0.86775 0.81257 0.79441 0.81845 1.20321 1.21587 1.18803 1.21042 0.94400 0.93610 0.94477 1.21222 0.91527 0.93513 0.92367 1.21978 1.01113 0.93714 1.02274 1.21509 0.93545 0.99072 0.96165 1.22100 0.97335 0.98831 1.02059 1.22800 0.98895 0.88416 0.95544 1.67542 1.02609 1.34635 1.12668 0.96106 0.91565 0.90974 0.91148 0.91620 0.96174 0.89410 0.95268 0.91666 0.88930 0.91278 0.94992 0.96289 0.96177 0.92809 0.89022 0.93198 0.85527 0.85202 0.85113 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.57 60.06 0.57 0.87 16 2 N -0.54 -7.27 5.02 -251.27 -1.26 -8.53 16 3 C 0.02 0.24 9.32 60.07 0.56 0.80 16 4 C 0.02 0.23 4.32 -3.83 -0.02 0.21 16 5 C 0.05 0.87 4.77 -3.83 -0.02 0.85 16 6 N -0.53 -9.15 4.66 -236.08 -1.10 -10.25 16 7 C 0.07 1.38 4.68 -3.82 -0.02 1.36 16 8 C -0.01 -0.16 3.97 -27.89 -0.11 -0.27 16 9 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 10 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.91 -28.26 13.96 55.43 0.77 -27.49 16 13 Si 0.88 22.43 27.47 -169.99 -4.67 17.77 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 17 C 0.09 1.37 5.15 -4.98 -0.03 1.35 16 18 C 0.15 2.13 5.84 -82.59 -0.48 1.65 16 19 C -0.17 -1.95 8.35 -39.44 -0.33 -2.28 16 20 C -0.08 -0.74 10.17 -39.28 -0.40 -1.14 16 21 C -0.18 -1.74 10.11 -39.44 -0.40 -2.14 16 22 C 0.10 1.17 11.18 -17.55 -0.20 0.97 16 23 N -0.47 -6.91 10.27 -9.47 -0.10 -7.01 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 26 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 27 H 0.07 0.77 6.52 -51.93 -0.34 0.44 16 28 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 1.46 6.11 -51.93 -0.32 1.14 16 31 H 0.03 0.39 6.24 -51.93 -0.32 0.06 16 32 H 0.07 0.96 4.93 -51.93 -0.26 0.71 16 33 H 0.09 1.73 6.40 -51.93 -0.33 1.40 16 34 H 0.07 1.41 7.87 -51.93 -0.41 1.00 16 35 H 0.03 0.63 6.00 -51.93 -0.31 0.32 16 36 H 0.02 0.47 5.58 -51.93 -0.29 0.18 16 37 H 0.02 0.51 7.57 -51.92 -0.39 0.11 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.09 1.39 7.82 -51.93 -0.41 0.98 16 40 H 0.05 0.66 5.82 -51.93 -0.30 0.36 16 41 H 0.13 1.29 7.97 -52.49 -0.42 0.88 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -32.56 344.65 -9.51 -42.07 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.06 Total: -0.69 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.29 Total: -11.06 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -1.68 Total: -53.28 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.56 -9.51 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569138824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.495 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds