Wall clock time and date at job start Mon Mar 30 2020 02:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00081 * 2 1 4 4 C 1.46897 * 111.00192 * 123.95675 * 2 1 3 5 5 C 1.53000 * 109.47464 * 169.99613 * 4 2 1 6 6 N 1.46894 * 109.47378 * 182.45915 * 5 4 2 7 7 C 1.46905 * 111.00177 * 61.67177 * 6 5 4 8 8 C 1.52997 * 109.46822 * 66.04099 * 7 6 5 9 9 C 1.50698 * 109.47250 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00099 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00320 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99834 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99755 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46831 * 90.00593 * 13 11 9 15 15 H 1.48498 * 109.47000 * 210.00245 * 13 11 9 16 16 H 1.48495 * 109.47416 * 330.00630 * 13 11 9 17 17 C 1.46900 * 111.00424 * 297.72009 * 6 5 4 18 18 C 1.50699 * 109.46811 * 288.47588 * 17 6 5 19 19 C 1.38232 * 119.62033 * 94.00624 * 18 17 6 20 20 C 1.38623 * 119.16327 * 179.97438 * 19 18 17 21 21 C 1.38664 * 118.42262 * 359.97438 * 20 19 18 22 22 C 1.38185 * 119.16488 * 0.02562 * 21 20 19 23 23 N 1.31855 * 119.62157 * 273.97528 * 18 17 6 24 24 H 1.09003 * 109.46683 * 296.04351 * 1 2 3 25 25 H 1.08997 * 109.47615 * 56.04217 * 1 2 3 26 26 H 1.08999 * 109.47354 * 176.04648 * 1 2 3 27 27 H 1.09002 * 109.47038 * 183.94791 * 3 2 1 28 28 H 1.08990 * 109.47354 * 303.95701 * 3 2 1 29 29 H 1.09001 * 109.46786 * 63.96116 * 3 2 1 30 30 H 1.09004 * 109.47076 * 49.99563 * 4 2 1 31 31 H 1.09000 * 109.47322 * 289.99810 * 4 2 1 32 32 H 1.09005 * 109.46912 * 62.46172 * 5 4 2 33 33 H 1.08994 * 109.47167 * 302.46739 * 5 4 2 34 34 H 1.08997 * 109.47668 * 186.04369 * 7 6 5 35 35 H 1.09005 * 109.47009 * 306.05211 * 7 6 5 36 36 H 1.09002 * 109.47655 * 300.00678 * 8 7 6 37 37 H 1.09009 * 109.46873 * 60.00588 * 8 7 6 38 38 H 0.96997 * 119.99542 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47362 * 168.47852 * 17 6 5 40 40 H 1.08998 * 109.47136 * 48.47465 * 17 6 5 41 41 H 1.07996 * 120.41547 * 359.94545 * 19 18 17 42 42 H 1.08008 * 120.78938 * 180.02562 * 20 19 18 43 43 H 1.08007 * 120.42168 * 179.97438 * 21 20 19 44 44 H 1.07999 * 119.62105 * 180.27616 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9555 0.9702 6 7 4.0212 -1.7714 2.0770 7 6 3.4094 -3.1070 2.0769 8 6 3.8499 -3.8695 0.8257 9 6 3.2218 -5.2394 0.8252 10 1 2.5729 -5.5363 1.6359 11 6 3.4755 -6.1137 -0.2103 12 7 2.9269 -7.3090 -0.2110 13 14 4.5972 -5.6000 -1.6129 14 1 5.9981 -5.9698 -1.2871 15 1 4.1799 -6.2913 -2.8591 16 1 4.5056 -4.1307 -1.8074 17 6 3.8168 -1.0990 3.3670 18 6 4.7551 0.0752 3.4756 19 6 4.3217 1.3331 3.1007 20 6 5.1925 2.4066 3.2049 21 6 6.4724 2.1739 3.6851 22 6 6.8350 0.8888 4.0406 23 7 5.9800 -0.1090 3.9277 24 1 -0.3633 0.4512 0.9234 25 1 -0.3634 0.5740 -0.8523 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5898 1.9163 -0.8523 29 1 1.7045 1.8723 0.9234 30 1 1.5089 -1.7407 1.1755 31 1 1.7976 -0.2249 2.0628 32 1 3.9956 0.0176 0.9761 33 1 3.7048 -1.4578 0.0240 34 1 3.7271 -3.6524 2.9655 35 1 2.3237 -3.0093 2.0792 36 1 3.5322 -3.3241 -0.0630 37 1 4.9356 -3.9673 0.8233 38 1 3.1051 -7.9240 -0.9397 39 1 4.0164 -1.7998 4.1777 40 1 2.7869 -0.7486 3.4349 41 1 3.3174 1.4776 2.7307 42 1 4.8812 3.4008 2.9198 43 1 7.1774 2.9868 3.7792 44 1 7.8285 0.7000 4.4197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569138824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:52 Heat of formation + Delta-G solvation = 27.840544 kcal Electronic energy + Delta-G solvation = -22053.619495 eV Core-core repulsion = 19005.334256 eV Total energy + Delta-G solvation = -3048.285239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.26988 -39.64836 -37.50794 -35.20988 -33.49179 -33.13874 -31.75599 -30.06465 -28.46729 -27.55519 -26.23046 -24.49690 -24.18915 -22.87675 -22.34876 -20.56009 -19.02636 -17.68815 -17.51252 -17.15934 -16.67699 -16.40987 -16.34139 -15.87201 -15.76228 -15.25864 -14.88777 -14.71152 -14.36512 -14.29133 -14.00639 -13.77230 -13.47142 -13.40453 -13.00339 -12.88675 -12.70493 -12.62615 -12.56095 -12.40614 -12.01624 -11.81078 -11.72382 -11.45936 -11.30671 -10.75979 -10.72878 -10.27576 -9.93089 -9.41262 -9.06481 -8.28997 -6.31826 0.19474 0.43939 1.36092 1.36777 1.50191 2.36930 2.69512 2.98344 3.07155 3.28690 3.43316 3.82187 3.92267 4.04549 4.07168 4.17676 4.22025 4.28501 4.36799 4.38591 4.40148 4.48027 4.55321 4.64948 4.68470 4.69844 4.80193 4.88973 4.96090 4.98439 5.00057 5.01764 5.13037 5.24517 5.30240 5.32245 5.48621 5.63409 5.83951 5.96687 6.09998 6.15910 6.19321 6.31784 6.75059 7.18107 7.32745 8.87645 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.005314 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.122707 B = 5267.752581 C = 6457.397031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.562 5.562 3 C 0.023 3.977 4 C 0.028 3.972 5 C 0.063 3.937 6 N -0.536 5.536 7 C 0.082 3.918 8 C 0.004 3.996 9 C -0.527 4.527 10 H 0.035 0.965 11 C 0.012 3.988 12 N -0.949 5.949 13 Si 0.946 3.054 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.252 1.252 17 C 0.098 3.902 18 C 0.126 3.874 19 C -0.171 4.171 20 C -0.074 4.074 21 C -0.171 4.171 22 C 0.083 3.917 23 N -0.508 5.508 24 H 0.033 0.967 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.019 0.981 37 H 0.012 0.988 38 H 0.266 0.734 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.139 0.861 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 26.361 5.266 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.287 5.287 3 C -0.124 4.124 4 C -0.102 4.102 5 C -0.065 4.065 6 N -0.259 5.259 7 C -0.045 4.045 8 C -0.034 4.034 9 C -0.566 4.566 10 H 0.054 0.946 11 C -0.186 4.186 12 N -0.590 5.590 13 Si 0.770 3.230 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.176 1.176 17 C -0.030 4.030 18 C -0.012 4.012 19 C -0.191 4.191 20 C -0.100 4.100 21 C -0.191 4.191 22 C -0.074 4.074 23 N -0.218 5.218 24 H 0.051 0.949 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.157 0.843 42 H 0.183 0.817 43 H 0.183 0.817 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.626 25.062 4.926 25.676 hybrid contribution -1.093 0.470 0.047 1.191 sum 1.533 25.532 4.974 26.057 Atomic orbital electron populations 1.22391 0.86430 1.02102 1.01268 1.61871 1.08836 1.15034 1.42912 1.22487 1.00919 0.87683 1.01348 1.22680 0.97284 0.98148 0.92068 1.22142 0.92170 0.97766 0.94455 1.62179 1.58311 1.02630 1.02771 1.21878 0.95980 0.87631 0.98991 1.19390 0.95856 0.93433 0.94735 1.21375 1.28804 0.99050 1.07355 0.94625 1.25864 0.97256 0.94568 1.00865 1.70051 1.46422 1.08299 1.34200 0.85720 0.79198 0.79665 0.78448 1.19482 1.20698 1.17574 1.20994 0.95837 0.93859 0.92304 1.21066 0.91526 0.94002 0.94636 1.22103 1.02046 0.93158 1.01811 1.21955 0.93102 1.00035 0.94885 1.22494 0.97957 0.98762 0.99901 1.23224 0.99283 0.88987 0.95937 1.67432 1.03549 1.36734 1.14095 0.94878 0.89885 0.92599 0.91453 0.90234 0.94567 0.92238 0.93600 0.89891 0.91915 0.92201 0.94913 0.96314 0.96976 0.92481 0.90375 0.91654 0.84283 0.81702 0.81650 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.57 127.69 1.22 1.79 16 2 N -0.56 -14.20 5.02 -948.86 -4.76 -18.96 16 3 C 0.02 0.43 9.32 127.69 1.19 1.62 16 4 C 0.03 0.78 4.32 86.30 0.37 1.15 16 5 C 0.06 1.98 4.77 86.30 0.41 2.39 16 6 N -0.54 -18.76 4.66 -900.81 -4.20 -22.96 16 7 C 0.08 3.43 4.68 86.30 0.40 3.83 16 8 C 0.00 0.18 3.97 29.85 0.12 0.30 16 9 C -0.53 -31.43 9.66 25.60 0.25 -31.19 16 10 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 11 C 0.01 0.69 5.47 84.66 0.46 1.16 16 12 N -0.95 -60.85 13.96 21.45 0.30 -60.56 16 13 Si 0.95 46.71 27.47 68.60 1.88 48.60 16 14 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 15 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 16 H -0.25 -11.87 6.54 99.48 0.65 -11.22 16 17 C 0.10 2.87 5.15 85.56 0.44 3.31 16 18 C 0.13 3.37 5.84 42.55 0.25 3.62 16 19 C -0.17 -3.42 8.35 22.36 0.19 -3.23 16 20 C -0.07 -1.12 10.17 22.46 0.23 -0.89 16 21 C -0.17 -2.62 10.11 22.36 0.23 -2.39 16 22 C 0.08 1.75 11.18 84.67 0.95 2.70 16 23 N -0.51 -14.72 10.27 -183.88 -1.89 -16.61 16 24 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 26 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 27 H 0.07 1.28 6.52 -2.39 -0.02 1.27 16 28 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 2.01 6.11 -2.39 -0.01 1.99 16 31 H 0.05 1.12 6.24 -2.39 -0.01 1.11 16 32 H 0.08 2.31 4.93 -2.38 -0.01 2.30 16 33 H 0.06 2.35 6.40 -2.39 -0.02 2.33 16 34 H 0.06 2.56 7.87 -2.39 -0.02 2.54 16 35 H 0.03 1.35 6.00 -2.38 -0.01 1.33 16 36 H 0.02 0.93 5.58 -2.39 -0.01 0.92 16 37 H 0.01 0.61 7.57 -2.38 -0.02 0.59 16 38 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 39 H 0.08 2.44 7.82 -2.39 -0.02 2.42 16 40 H 0.07 1.66 5.82 -2.39 -0.01 1.65 16 41 H 0.14 2.35 7.97 -2.91 -0.02 2.32 16 42 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -72.73 344.65 -1.05 -73.77 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.91 Total: 12.55 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 6.71 Total: -15.83 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -10.55 Total: -119.09 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.88 Total: 48.60 kcal Total: -72.73 -1.05 -73.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569138824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.613 kcal (2) G-P(sol) polarization free energy of solvation -72.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds