Wall clock time and date at job start Mon Mar 30 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47458 * 2 1 4 4 N 1.46499 * 109.47026 * 120.00411 * 2 1 3 5 5 C 1.35047 * 126.39717 * 300.11598 * 4 2 1 6 6 N 1.30501 * 108.69904 * 180.26611 * 5 4 2 7 7 C 1.34126 * 109.25734 * 359.77301 * 6 5 4 8 8 C 1.34670 * 108.02197 * 359.97438 * 7 6 5 9 9 C 1.50696 * 126.59316 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47104 * 95.02828 * 9 8 7 11 11 C 1.46847 * 111.00144 * 170.00196 * 10 9 8 12 12 C 1.53044 * 109.51335 * 185.83239 * 11 10 9 13 13 C 1.53117 * 109.27792 * 300.82256 * 12 11 10 14 14 C 1.50697 * 109.52162 * 177.62499 * 13 12 11 15 15 H 1.08002 * 120.00007 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99833 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00317 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00079 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47385 * 89.99830 * 18 16 14 20 20 H 1.48497 * 109.47506 * 210.00166 * 18 16 14 21 21 H 1.48504 * 109.46955 * 330.00398 * 18 16 14 22 22 C 1.53127 * 109.15989 * 57.65607 * 13 12 11 23 23 C 1.46830 * 110.98168 * 294.21614 * 10 9 8 24 24 H 1.09004 * 109.46788 * 300.00358 * 1 2 3 25 25 H 1.08999 * 109.47089 * 59.99621 * 1 2 3 26 26 H 1.08996 * 109.47472 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47291 * 240.00182 * 2 1 3 28 28 H 1.08999 * 109.47280 * 300.00262 * 3 2 1 29 29 H 1.09004 * 109.46882 * 60.00576 * 3 2 1 30 30 H 1.09005 * 109.47014 * 179.97438 * 3 2 1 31 31 H 1.08001 * 125.64676 * 0.02562 * 5 4 2 32 32 H 1.08000 * 125.99314 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47398 * 335.02838 * 9 8 7 34 34 H 1.09002 * 109.47205 * 215.02220 * 9 8 7 35 35 H 1.09002 * 109.46448 * 65.81961 * 11 10 9 36 36 H 1.08994 * 109.45958 * 305.84326 * 11 10 9 37 37 H 1.09001 * 109.49858 * 60.76701 * 12 11 10 38 38 H 1.09002 * 109.49779 * 180.84687 * 12 11 10 39 39 H 1.09004 * 109.52347 * 297.75632 * 13 12 11 40 40 H 0.96999 * 120.00049 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.50037 * 62.28538 * 22 13 12 42 42 H 1.09000 * 109.49970 * 182.40199 * 22 13 12 43 43 H 1.08995 * 109.46742 * 54.13906 * 23 10 9 44 44 H 1.09004 * 109.45381 * 294.16241 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7712 -0.3451 2.4780 6 7 2.3779 -1.1919 3.2640 7 6 3.0234 -2.1021 2.5197 8 6 2.8080 -1.8085 1.2232 9 6 3.3400 -2.5615 0.0312 10 7 2.3339 -3.5296 -0.4254 11 6 2.7135 -4.1129 -1.7184 12 6 1.5787 -5.0029 -2.2307 13 6 1.3053 -6.1111 -1.2101 14 6 0.1500 -6.9560 -1.6815 15 1 -0.3414 -6.7262 -2.6154 16 6 -0.2805 -8.0217 -0.9200 17 7 0.3168 -8.3006 0.2181 18 14 -1.7131 -9.0687 -1.5039 19 1 -1.2017 -10.1887 -2.3341 20 1 -2.4386 -9.6146 -0.3289 21 1 -2.6380 -8.2349 -2.3131 22 6 0.9597 -5.4767 0.1401 23 6 2.1124 -4.5730 0.5836 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.1738 0.4953 2.7994 32 1 3.6126 -2.9260 2.8944 33 1 4.2512 -3.0896 0.3121 34 1 3.5602 -1.8597 -0.7733 35 1 3.6169 -4.7106 -1.5961 36 1 2.9010 -3.3143 -2.4361 37 1 0.6789 -4.4029 -2.3664 38 1 1.8668 -5.4476 -3.1832 39 1 2.1929 -6.7347 -1.1029 40 1 0.0142 -9.0506 0.7536 41 1 0.0501 -4.8844 0.0416 42 1 0.8058 -6.2606 0.8816 43 1 1.8634 -4.1087 1.5378 44 1 3.0186 -5.1685 0.6950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569716172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:08 Heat of formation + Delta-G solvation = 50.049698 kcal Electronic energy + Delta-G solvation = -22442.720547 eV Core-core repulsion = 19395.398369 eV Total energy + Delta-G solvation = -3047.322178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.02224 -38.15829 -36.02523 -34.15441 -31.88386 -30.66952 -29.80484 -29.32510 -27.52114 -26.32337 -24.24569 -23.04208 -22.05098 -21.41007 -20.89775 -19.12941 -18.55547 -16.88370 -16.37767 -15.66304 -15.17603 -14.76731 -14.39016 -14.34997 -14.17619 -13.79170 -13.41927 -13.13365 -12.92829 -12.84886 -12.53462 -12.34409 -12.23539 -12.06840 -11.67087 -11.60533 -11.40942 -11.20669 -10.94855 -10.71555 -10.47858 -10.21494 -9.97531 -9.74362 -9.45181 -9.37984 -8.96930 -8.68706 -8.27311 -8.19762 -7.76673 -5.94982 -4.00556 2.18396 2.86192 3.32265 3.34822 3.39328 3.42278 4.41826 4.46209 4.50651 4.72021 4.73796 4.81714 4.93731 5.24221 5.27441 5.35219 5.37415 5.41881 5.51080 5.63202 5.65760 5.70387 5.73487 5.88819 5.98382 6.03044 6.10487 6.23299 6.33072 6.56945 6.63040 6.66790 6.84655 6.92667 7.06784 7.15957 7.36934 7.45300 7.60744 7.67306 7.84148 8.06569 8.18674 8.26189 8.50216 9.03029 9.63823 11.11127 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.004393 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.546984 B = 6372.122011 C = 6526.613112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.162 4.162 4 N -0.440 5.440 5 C 0.174 3.826 6 N -0.495 5.495 7 C -0.028 4.028 8 C 0.001 3.999 9 C 0.124 3.876 10 N -0.532 5.532 11 C 0.061 3.939 12 C -0.105 4.105 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.101 4.101 23 C 0.057 3.943 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.196 0.804 32 H 0.164 0.836 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.020 0.980 40 H 0.259 0.741 41 H 0.040 0.960 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 17.783 -0.837 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 C -0.219 4.219 4 N -0.123 5.123 5 C -0.108 4.108 6 N -0.213 5.213 7 C -0.176 4.176 8 C -0.115 4.115 9 C -0.005 4.005 10 N -0.257 5.257 11 C -0.067 4.067 12 C -0.143 4.143 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.140 4.140 23 C -0.070 4.070 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.213 0.787 32 H 0.181 0.819 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.088 17.997 -0.031 18.456 hybrid contribution -0.085 -1.058 -0.975 1.442 sum 4.003 16.939 -1.006 17.435 Atomic orbital electron populations 1.22133 0.93058 1.04000 1.02628 1.21405 0.95735 0.93140 0.87117 1.22185 1.01912 0.94707 1.03132 1.45457 1.37529 1.21874 1.07456 1.24622 1.04486 1.02396 0.79288 1.70247 1.12305 1.05235 1.33549 1.22008 1.05419 1.01211 0.88980 1.21093 1.01193 0.91775 0.97403 1.20397 0.93307 0.94155 0.92594 1.62055 1.42708 1.17057 1.03918 1.22128 0.97912 0.96791 0.89860 1.21666 0.96275 0.97252 0.99062 1.18686 0.96500 0.91265 0.90614 1.21193 1.15777 1.11981 1.05992 0.92845 1.24963 0.96703 0.97329 0.94969 1.69876 1.41304 1.28924 1.12882 0.86651 0.82807 0.80643 0.78218 1.20804 1.21287 1.20006 1.21632 0.94298 0.96704 1.01328 1.22311 0.99337 0.91603 0.93791 0.92126 0.90778 0.90822 0.87903 0.90588 0.91822 0.91980 0.78708 0.81914 0.92936 0.90998 0.95593 0.92634 0.92642 0.93172 0.96154 0.93087 0.94157 0.88998 0.92040 0.95912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.24 37.16 0.34 -1.17 16 2 C 0.13 1.27 3.56 -67.93 -0.24 1.03 16 3 C -0.16 -1.17 9.25 37.16 0.34 -0.83 16 4 N -0.44 -5.60 2.62 -106.92 -0.28 -5.88 16 5 C 0.17 2.29 11.55 -90.37 -1.04 1.25 16 6 N -0.50 -8.00 11.25 -14.66 -0.16 -8.16 16 7 C -0.03 -0.43 10.63 -17.81 -0.19 -0.62 16 8 C 0.00 0.01 5.69 -81.60 -0.46 -0.45 16 9 C 0.12 1.76 5.00 -4.98 -0.02 1.73 16 10 N -0.53 -9.12 4.65 -236.13 -1.10 -10.22 16 11 C 0.06 1.04 5.46 -3.83 -0.02 1.02 16 12 C -0.10 -2.15 5.32 -26.65 -0.14 -2.29 16 13 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 14 C -0.51 -14.05 8.56 -34.44 -0.29 -14.35 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 17 N -0.89 -25.60 11.37 55.43 0.63 -24.97 16 18 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.10 -2.42 5.12 -26.65 -0.14 -2.56 16 23 C 0.06 1.13 5.29 -3.84 -0.02 1.11 16 24 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 1.08 6.94 -51.93 -0.36 0.72 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 7.95 -51.93 -0.41 0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.20 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 34 H 0.07 0.88 7.27 -51.93 -0.38 0.51 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.81 8.01 -51.93 -0.42 0.39 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 43 H 0.06 1.22 6.23 -51.93 -0.32 0.90 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -30.43 345.12 -10.58 -41.00 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.66 Total: 0.16 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.18 Total: -13.53 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.91 Total: -49.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.43 -10.58 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569716172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.053 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds