Wall clock time and date at job start Mon Mar 30 2020 02:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.34945 * 126.03464 * 125.00022 * 3 2 1 5 5 C 1.35322 * 107.74328 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03875 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47059 * 89.99832 * 6 5 4 8 8 N 1.46898 * 109.46961 * 179.97438 * 7 6 5 9 9 C 1.46848 * 111.00092 * 294.20905 * 8 7 6 10 10 C 1.53039 * 109.52397 * 174.16032 * 9 8 7 11 11 C 1.53119 * 109.27635 * 59.18208 * 10 9 8 12 12 C 1.50698 * 109.57568 * 182.40939 * 11 10 9 13 13 H 1.08001 * 120.00310 * 119.71237 * 12 11 10 14 14 C 1.37874 * 120.00157 * 299.71682 * 12 11 10 15 15 N 1.31522 * 119.99950 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00295 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47172 * 90.00094 * 16 14 12 18 18 H 1.48501 * 109.47497 * 209.99691 * 16 14 12 19 19 H 1.48497 * 109.47454 * 330.00319 * 16 14 12 20 20 C 1.53120 * 109.16080 * 302.34479 * 11 10 9 21 21 C 1.46848 * 110.99718 * 170.00337 * 8 7 6 22 22 C 1.39863 * 107.91864 * 359.97438 * 5 4 3 23 23 N 1.30841 * 108.20499 * 359.74195 * 22 5 4 24 24 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 28 28 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 29 29 H 1.08003 * 126.13098 * 359.97438 * 4 3 2 30 30 H 1.08997 * 109.47150 * 210.00094 * 6 5 4 31 31 H 1.09001 * 109.47168 * 329.99980 * 6 5 4 32 32 H 1.08997 * 109.47353 * 300.00137 * 7 6 5 33 33 H 1.09001 * 109.47010 * 60.00051 * 7 6 5 34 34 H 1.08995 * 109.46530 * 294.17927 * 9 8 7 35 35 H 1.09000 * 109.46068 * 54.14959 * 9 8 7 36 36 H 1.09004 * 109.50057 * 299.24474 * 10 9 8 37 37 H 1.08996 * 109.50337 * 179.12537 * 10 9 8 38 38 H 1.09004 * 109.52424 * 62.25222 * 11 10 9 39 39 H 0.97002 * 120.00038 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.50328 * 297.71493 * 20 11 10 41 41 H 1.09004 * 109.50458 * 177.59296 * 20 11 10 42 42 H 1.08999 * 109.46659 * 305.85324 * 21 8 7 43 43 H 1.09003 * 109.46648 * 65.83678 * 21 8 7 44 44 H 1.08004 * 125.89957 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0721 3.2135 0.5457 6 6 3.9551 4.1999 1.2657 7 6 5.3684 4.1394 0.6828 8 7 6.2290 5.1013 1.3843 9 6 5.7971 6.4806 1.1247 10 6 6.6204 7.4443 1.9824 11 6 8.1045 7.2818 1.6423 12 6 8.9266 8.1854 2.5248 13 1 9.6693 7.7643 3.1862 14 6 8.7304 9.5496 2.4880 15 7 7.8255 10.0624 1.6831 16 14 9.7489 10.6695 3.5824 17 1 10.9819 11.0775 2.8623 18 1 8.9564 11.8764 3.9299 19 1 10.1182 9.9451 4.8250 20 6 8.5169 5.8257 1.8752 21 6 7.6386 4.9089 1.0206 22 6 2.3134 3.4721 -0.6006 23 7 1.6859 2.3728 -0.9320 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.3185 1.4128 1.7363 30 1 3.5534 5.2055 1.1411 31 1 3.9885 3.9508 2.3263 32 1 5.7701 3.1338 0.8074 33 1 5.3350 4.3884 -0.3778 34 1 5.9453 6.7153 0.0707 35 1 4.7412 6.5837 1.3746 36 1 6.4619 7.2189 3.0370 37 1 6.3103 8.4690 1.7780 38 1 8.2697 7.5446 0.5974 39 1 7.6878 11.0222 1.6569 40 1 8.3883 5.5750 2.9280 41 1 9.5618 5.6940 1.5941 42 1 7.9203 3.8705 1.1948 43 1 7.7783 5.1513 -0.0330 44 1 2.2583 4.4151 -1.1241 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571904232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:27 Heat of formation + Delta-G solvation = 63.643399 kcal Electronic energy + Delta-G solvation = -21207.077021 eV Core-core repulsion = 18160.344310 eV Total energy + Delta-G solvation = -3046.732711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27430 -38.22459 -35.13288 -34.13003 -32.36131 -30.71363 -30.22533 -29.71080 -27.50360 -25.35321 -24.00867 -22.78603 -21.96578 -20.93155 -20.79500 -19.78695 -18.50457 -17.05455 -16.32833 -15.65510 -15.29569 -14.64702 -14.50585 -14.32684 -14.14418 -13.84724 -13.34035 -13.03687 -12.86918 -12.70367 -12.47677 -12.42984 -12.29113 -12.03478 -11.67968 -11.47294 -11.24805 -10.91983 -10.84615 -10.60485 -10.43048 -10.31446 -10.12980 -9.90210 -9.49132 -9.34313 -8.88846 -8.65645 -8.34559 -8.22970 -7.64220 -5.91932 -3.97011 1.81985 2.38408 2.77427 3.34600 3.41300 3.44946 4.21864 4.49161 4.54970 4.60411 4.72125 4.82540 4.95868 5.18837 5.25259 5.36851 5.38114 5.52245 5.56559 5.70100 5.75470 5.79617 5.92306 5.92956 6.00772 6.19482 6.28847 6.35489 6.40579 6.43769 6.64203 6.71055 6.73414 6.93310 6.94484 7.15812 7.25394 7.52344 7.63938 7.70834 7.80125 7.91567 8.12304 8.23319 8.54633 9.06792 9.67019 11.14220 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.049507 B = 0.002810 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.441499 B = 9960.947411 C =10214.442668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.378 5.378 4 C 0.052 3.948 5 C -0.225 4.225 6 C -0.038 4.038 7 C 0.062 3.938 8 N -0.537 5.537 9 C 0.055 3.945 10 C -0.104 4.104 11 C 0.047 3.953 12 C -0.509 4.509 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.106 4.106 21 C 0.062 3.938 22 C 0.052 3.948 23 N -0.300 5.300 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.172 0.828 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.021 0.979 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.019 0.981 39 H 0.259 0.741 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.022 0.978 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 -18.454 -2.667 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.161 5.161 4 C -0.093 4.093 5 C -0.237 4.237 6 C -0.077 4.077 7 C -0.066 4.066 8 N -0.262 5.262 9 C -0.072 4.072 10 C -0.142 4.142 11 C 0.029 3.971 12 C -0.547 4.547 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.144 4.144 21 C -0.066 4.066 22 C -0.135 4.135 23 N -0.121 5.121 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.189 0.811 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.038 0.962 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.290 -19.079 -3.042 23.450 hybrid contribution 1.184 1.141 0.231 1.660 sum -12.106 -17.939 -2.811 21.823 Atomic orbital electron populations 1.22054 0.93929 1.02690 1.03603 1.21631 0.95971 0.77777 1.03566 1.48622 1.36093 1.10105 1.21265 1.22360 0.95693 0.94776 0.96511 1.20184 1.07214 0.95232 1.01061 1.19900 0.92190 0.96835 0.98767 1.22039 0.92873 0.96315 0.95371 1.62002 1.02334 1.04460 1.57431 1.22314 0.99012 0.87682 0.98199 1.21654 0.96762 0.98678 0.97146 1.18686 0.92388 0.89456 0.96614 1.21220 1.19455 0.91253 1.22790 0.92800 1.24972 0.95348 0.98188 0.95576 1.69884 1.33382 1.11851 1.38043 0.86643 0.80201 0.80354 0.81069 1.20862 1.21320 1.19981 1.21678 0.96536 0.97366 0.98828 1.22088 0.88236 0.98942 0.97357 1.23845 0.95898 0.97359 0.96353 1.77273 1.24215 0.97066 1.13557 0.91131 0.90846 0.92092 0.88785 0.90028 0.81131 0.90950 0.90760 0.91869 0.95668 0.96121 0.92312 0.93867 0.89067 0.96248 0.93152 0.92519 0.93341 0.92658 0.95995 0.80228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 10.10 37.16 0.38 -0.67 16 2 C 0.13 0.89 7.23 -4.04 -0.03 0.87 16 3 N -0.38 -4.04 3.68 -61.36 -0.23 -4.26 16 4 C 0.05 0.55 11.36 -17.22 -0.20 0.35 16 5 C -0.23 -2.73 5.35 -105.05 -0.56 -3.29 16 6 C -0.04 -0.49 5.63 -27.88 -0.16 -0.65 16 7 C 0.06 0.92 4.94 -3.82 -0.02 0.90 16 8 N -0.54 -9.64 4.66 -234.67 -1.09 -10.73 16 9 C 0.06 1.09 5.29 -3.83 -0.02 1.07 16 10 C -0.10 -2.48 5.12 -26.65 -0.14 -2.62 16 11 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 12 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 15 N -0.89 -25.66 11.37 55.43 0.63 -25.03 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 21 C 0.06 1.14 5.46 -3.83 -0.02 1.11 16 22 C 0.05 0.64 11.96 -17.37 -0.21 0.44 16 23 N -0.30 -3.90 12.42 30.62 0.38 -3.52 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.40 8.07 -51.93 -0.42 -0.02 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 30 H 0.07 0.98 6.43 -51.93 -0.33 0.64 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.87 7.99 -51.93 -0.41 0.46 16 33 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.05 6.21 -51.93 -0.32 0.73 16 36 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.18 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -30.84 349.53 -9.45 -40.29 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.69 Total: -1.72 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.70 Total: -16.77 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.31 Total: -43.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.84 -9.45 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571904232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.933 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds