Wall clock time and date at job start Mon Mar 30 2020 02:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.34945 * 126.03464 * 125.00022 * 3 2 1 5 5 C 1.35322 * 107.74328 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03875 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47059 * 89.99832 * 6 5 4 8 8 N 1.46898 * 109.46961 * 179.97438 * 7 6 5 9 9 C 1.46848 * 111.00092 * 294.20905 * 8 7 6 10 10 C 1.53039 * 109.52397 * 174.16032 * 9 8 7 11 11 C 1.53119 * 109.27635 * 59.18208 * 10 9 8 12 12 C 1.50698 * 109.57568 * 182.40939 * 11 10 9 13 13 H 1.08001 * 120.00310 * 119.71237 * 12 11 10 14 14 C 1.37874 * 120.00157 * 299.71682 * 12 11 10 15 15 N 1.31522 * 119.99950 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00295 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47172 * 90.00094 * 16 14 12 18 18 H 1.48501 * 109.47497 * 209.99691 * 16 14 12 19 19 H 1.48497 * 109.47454 * 330.00319 * 16 14 12 20 20 C 1.53120 * 109.16080 * 302.34479 * 11 10 9 21 21 C 1.46848 * 110.99718 * 170.00337 * 8 7 6 22 22 C 1.39863 * 107.91864 * 359.97438 * 5 4 3 23 23 N 1.30841 * 108.20499 * 359.74195 * 22 5 4 24 24 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 28 28 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 29 29 H 1.08003 * 126.13098 * 359.97438 * 4 3 2 30 30 H 1.08997 * 109.47150 * 210.00094 * 6 5 4 31 31 H 1.09001 * 109.47168 * 329.99980 * 6 5 4 32 32 H 1.08997 * 109.47353 * 300.00137 * 7 6 5 33 33 H 1.09001 * 109.47010 * 60.00051 * 7 6 5 34 34 H 1.08995 * 109.46530 * 294.17927 * 9 8 7 35 35 H 1.09000 * 109.46068 * 54.14959 * 9 8 7 36 36 H 1.09004 * 109.50057 * 299.24474 * 10 9 8 37 37 H 1.08996 * 109.50337 * 179.12537 * 10 9 8 38 38 H 1.09004 * 109.52424 * 62.25222 * 11 10 9 39 39 H 0.97002 * 120.00038 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.50328 * 297.71493 * 20 11 10 41 41 H 1.09004 * 109.50458 * 177.59296 * 20 11 10 42 42 H 1.08999 * 109.46659 * 305.85324 * 21 8 7 43 43 H 1.09003 * 109.46648 * 65.83678 * 21 8 7 44 44 H 1.08004 * 125.89957 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0721 3.2135 0.5457 6 6 3.9551 4.1999 1.2657 7 6 5.3684 4.1394 0.6828 8 7 6.2290 5.1013 1.3843 9 6 5.7971 6.4806 1.1247 10 6 6.6204 7.4443 1.9824 11 6 8.1045 7.2818 1.6423 12 6 8.9266 8.1854 2.5248 13 1 9.6693 7.7643 3.1862 14 6 8.7304 9.5496 2.4880 15 7 7.8255 10.0624 1.6831 16 14 9.7489 10.6695 3.5824 17 1 10.9819 11.0775 2.8623 18 1 8.9564 11.8764 3.9299 19 1 10.1182 9.9451 4.8250 20 6 8.5169 5.8257 1.8752 21 6 7.6386 4.9089 1.0206 22 6 2.3134 3.4721 -0.6006 23 7 1.6859 2.3728 -0.9320 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.3185 1.4128 1.7363 30 1 3.5534 5.2055 1.1411 31 1 3.9885 3.9508 2.3263 32 1 5.7701 3.1338 0.8074 33 1 5.3350 4.3884 -0.3778 34 1 5.9453 6.7153 0.0707 35 1 4.7412 6.5837 1.3746 36 1 6.4619 7.2189 3.0370 37 1 6.3103 8.4690 1.7780 38 1 8.2697 7.5446 0.5974 39 1 7.6878 11.0222 1.6569 40 1 8.3883 5.5750 2.9280 41 1 9.5618 5.6940 1.5941 42 1 7.9203 3.8705 1.1948 43 1 7.7783 5.1513 -0.0330 44 1 2.2583 4.4151 -1.1241 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571904232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:26 Heat of formation + Delta-G solvation = 45.689246 kcal Electronic energy + Delta-G solvation = -21207.855572 eV Core-core repulsion = 18160.344310 eV Total energy + Delta-G solvation = -3047.511262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.10510 -39.79288 -36.32846 -35.33649 -33.92139 -32.14903 -31.42176 -31.01634 -28.75915 -27.02179 -24.79906 -24.21664 -23.62655 -22.34702 -21.57140 -20.72015 -20.29828 -18.41464 -17.81380 -16.86085 -16.39487 -16.22950 -15.88206 -15.39977 -15.15075 -14.91153 -14.81554 -14.37270 -14.30830 -14.16936 -13.71117 -13.49060 -13.26032 -12.96631 -12.91901 -12.80586 -12.73387 -12.55403 -12.20661 -12.15851 -11.99648 -11.82887 -11.76071 -11.40387 -11.18724 -10.75969 -10.58877 -10.34415 -10.31869 -9.25231 -9.09074 -8.05125 -6.18509 1.00766 1.42468 1.43283 1.53719 1.70459 1.86741 2.45938 3.13978 3.21712 3.64036 4.01569 4.10882 4.17467 4.18861 4.28299 4.33750 4.40367 4.46934 4.47831 4.56660 4.68135 4.75173 4.80564 4.83372 4.87014 4.88909 4.96513 5.00918 5.03137 5.14719 5.23042 5.27100 5.35218 5.40093 5.46165 5.61199 5.66811 5.77016 6.04729 6.08450 6.22543 6.37023 6.42025 6.44566 6.79003 6.93520 7.49057 8.99434 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.049507 B = 0.002810 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.441499 B = 9960.947411 C =10214.442668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 N -0.377 5.377 4 C 0.063 3.937 5 C -0.245 4.245 6 C -0.026 4.026 7 C 0.068 3.932 8 N -0.540 5.540 9 C 0.068 3.932 10 C -0.095 4.095 11 C 0.042 3.958 12 C -0.532 4.532 13 H 0.051 0.949 14 C 0.010 3.990 15 N -0.919 5.919 16 Si 0.953 3.047 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.268 1.268 20 C -0.099 4.099 21 C 0.066 3.934 22 C 0.038 3.962 23 N -0.331 5.331 24 H 0.047 0.953 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.088 0.912 29 H 0.204 0.796 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.018 0.982 34 H 0.008 0.992 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.059 0.941 38 H -0.016 1.016 39 H 0.259 0.741 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.015 0.985 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 -20.732 -1.642 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.160 5.160 4 C -0.084 4.084 5 C -0.257 4.257 6 C -0.065 4.065 7 C -0.060 4.060 8 N -0.265 5.265 9 C -0.060 4.060 10 C -0.134 4.134 11 C 0.023 3.977 12 C -0.570 4.570 13 H 0.070 0.930 14 C -0.188 4.188 15 N -0.558 5.558 16 Si 0.779 3.221 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.137 4.137 21 C -0.062 4.062 22 C -0.148 4.148 23 N -0.153 5.153 24 H 0.066 0.934 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.106 0.894 29 H 0.221 0.779 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.037 0.963 34 H 0.027 0.973 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.002 0.998 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.034 0.966 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.415 -21.382 -2.029 25.323 hybrid contribution 1.198 1.781 -0.103 2.149 sum -12.217 -19.601 -2.132 23.195 Atomic orbital electron populations 1.22012 0.93787 1.03916 1.02034 1.22032 0.96155 0.76113 1.05528 1.48983 1.35584 1.10909 1.20491 1.22851 0.94573 0.94307 0.96639 1.20136 1.08107 0.96002 1.01488 1.19721 0.91118 0.96684 0.98948 1.22100 0.93278 0.95940 0.94696 1.61979 1.02597 1.03766 1.58116 1.22069 0.99282 0.88222 0.96415 1.21417 0.96611 0.98164 0.97162 1.18680 0.93185 0.91796 0.93996 1.21597 1.19910 0.92230 1.23242 0.93048 1.25761 0.96444 0.99691 0.96908 1.70029 1.34511 1.12092 1.39204 0.85627 0.78676 0.78361 0.79408 1.20297 1.20905 1.19264 1.21544 0.97500 0.95377 0.99293 1.22036 0.88090 0.99844 0.96184 1.24061 0.96135 0.97722 0.96837 1.77223 1.25232 0.97852 1.15030 0.93359 0.88227 0.92918 0.85523 0.89350 0.77884 0.92018 0.90282 0.90079 0.96324 0.97344 0.90388 0.94875 0.92242 0.99761 0.93141 0.92788 0.92996 0.89381 0.96637 0.79736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.10 71.98 0.73 -0.99 16 2 C 0.12 1.31 7.23 86.38 0.62 1.93 16 3 N -0.38 -7.23 3.68 -348.04 -1.28 -8.51 16 4 C 0.06 1.14 11.36 83.54 0.95 2.09 16 5 C -0.25 -5.51 5.35 -20.14 -0.11 -5.62 16 6 C -0.03 -0.62 5.63 29.85 0.17 -0.45 16 7 C 0.07 1.84 4.94 86.30 0.43 2.26 16 8 N -0.54 -18.54 4.66 -896.35 -4.17 -22.71 16 9 C 0.07 2.68 5.29 86.33 0.46 3.14 16 10 C -0.10 -4.65 5.12 30.65 0.16 -4.49 16 11 C 0.04 2.17 2.16 -11.46 -0.02 2.15 16 12 C -0.53 -30.10 8.56 25.60 0.22 -29.88 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 14 C 0.01 0.57 5.31 84.65 0.45 1.02 16 15 N -0.92 -54.19 11.37 21.45 0.24 -53.95 16 16 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 C -0.10 -4.21 5.32 30.65 0.16 -4.04 16 21 C 0.07 2.34 5.46 86.33 0.47 2.81 16 22 C 0.04 0.92 11.96 85.23 1.02 1.94 16 23 N -0.33 -8.36 12.42 -57.02 -0.71 -9.07 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.13 0.55 8.07 -2.39 -0.02 0.53 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.06 1.60 6.43 -2.39 -0.02 1.58 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 33 H 0.02 0.54 8.12 -2.39 -0.02 0.52 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.08 2.77 6.21 -2.39 -0.01 2.75 16 36 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 3.27 6.17 -2.39 -0.01 3.25 16 38 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 39 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.09 2.57 8.02 -2.39 -0.02 2.55 16 43 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.19 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -67.90 349.53 2.75 -65.15 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.95 Total: 10.76 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 5.70 Total: -28.14 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -5.92 Total: -94.25 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -67.90 2.75 -65.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571904232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.838 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds