Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.46086 * 2 1 4 4 C 1.54374 * 110.41061 * 237.58932 * 2 1 3 5 5 C 1.54260 * 105.06137 * 217.36324 * 4 2 1 6 6 H 1.09005 * 110.40775 * 118.93725 * 5 4 2 7 7 N 1.46897 * 110.32463 * 241.10398 * 5 4 2 8 8 C 1.46906 * 110.99730 * 202.08962 * 7 5 4 9 9 C 1.53006 * 109.46968 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47012 * 55.00095 * 9 8 7 11 11 C 1.47196 * 109.46828 * 295.00210 * 9 8 7 12 12 N 6.76001 * 133.85014 * 253.26447 * 2 1 3 13 13 C 1.52998 * 109.46762 * 174.99990 * 9 8 7 14 14 C 1.50708 * 109.46856 * 184.99827 * 13 9 8 15 15 H 1.08001 * 119.99937 * 359.97438 * 14 13 9 16 16 C 1.37873 * 119.99951 * 180.02562 * 14 13 9 17 17 N 1.31515 * 119.99939 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99942 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47372 * 60.00078 * 18 16 14 20 20 H 1.48503 * 109.47585 * 300.00460 * 18 16 14 21 21 H 1.48501 * 109.47542 * 179.97438 * 18 16 14 22 22 C 1.54376 * 105.05970 * 0.02562 * 5 4 2 23 23 N 1.48553 * 110.41436 * 122.41220 * 2 1 3 24 24 C 1.46900 * 111.00376 * 277.82068 * 23 2 1 25 25 C 1.52999 * 117.49898 * 241.41346 * 24 23 2 26 26 C 1.53000 * 117.49812 * 172.79121 * 24 23 2 27 27 H 1.09008 * 109.46835 * 297.58376 * 1 2 3 28 28 H 1.08994 * 109.47209 * 57.58235 * 1 2 3 29 29 H 1.08999 * 109.46834 * 177.58838 * 1 2 3 30 30 H 1.09002 * 110.32736 * 98.47145 * 4 2 1 31 31 H 1.08997 * 110.32835 * 336.26310 * 4 2 1 32 32 H 1.00896 * 110.99740 * 78.14152 * 7 5 4 33 33 H 1.09003 * 109.46948 * 60.00054 * 8 7 5 34 34 H 1.08997 * 109.47187 * 299.99681 * 8 7 5 35 35 H 1.08999 * 109.46907 * 65.00330 * 13 9 8 36 36 H 1.08991 * 109.47375 * 304.99806 * 13 9 8 37 37 H 0.96992 * 120.00203 * 359.97438 * 17 16 14 38 38 H 1.09005 * 110.41596 * 142.62953 * 22 5 4 39 39 H 1.08997 * 110.41419 * 265.07185 * 22 5 4 40 40 H 1.08995 * 115.54768 * 27.12350 * 24 23 2 41 41 H 1.09003 * 117.49872 * 0.02562 * 25 24 23 42 42 H 1.09001 * 117.50079 * 145.01892 * 25 24 23 43 43 H 1.09001 * 117.49847 * 214.97530 * 26 24 23 44 44 H 1.08997 * 117.50040 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0213 0.0000 4 6 2.0684 -0.7755 -1.2214 5 6 3.3178 -1.5187 -0.7055 6 1 3.1879 -2.5962 -0.8068 7 7 4.5123 -1.0785 -1.4385 8 6 5.5781 -2.0866 -1.3620 9 6 6.8031 -1.5933 -2.1347 10 1 7.1017 -0.6155 -1.7565 11 6 6.4706 -1.4857 -3.5645 12 7 6.2132 -1.4038 -4.6685 13 6 7.9544 -2.5842 -1.9518 14 6 9.1958 -2.0389 -2.6098 15 1 9.1663 -1.0816 -3.1089 16 6 10.3688 -2.7627 -2.5756 17 7 10.4043 -3.9291 -1.9692 18 14 11.9072 -2.0871 -3.3918 19 1 12.2686 -0.7886 -2.7687 20 1 11.6515 -1.8866 -4.8408 21 1 13.0248 -3.0488 -3.2143 22 6 3.4288 -1.1303 0.7845 23 7 2.0482 -0.7462 1.1753 24 6 2.0569 0.1013 2.3751 25 6 3.4088 0.3733 3.0381 26 6 2.4030 -0.5649 3.7082 27 1 -0.3633 0.4759 0.9109 28 1 -0.3633 0.5509 -0.8675 29 1 -0.3633 -1.0268 -0.0432 30 1 2.3416 -0.0840 -2.0186 31 1 1.3236 -1.4879 -1.5760 32 1 4.8352 -0.1845 -1.0999 33 1 5.2257 -3.0217 -1.7974 34 1 5.8488 -2.2507 -0.3190 35 1 7.6895 -3.5373 -2.4093 36 1 8.1418 -2.7313 -0.8882 37 1 9.6054 -4.2800 -1.5457 38 1 3.7688 -1.9812 1.3749 39 1 4.1069 -0.2858 0.9077 40 1 1.3185 0.9029 2.3898 41 1 4.2917 -0.0763 2.5837 42 1 3.5600 1.3541 3.4890 43 1 1.8926 -0.2014 4.6001 44 1 2.6246 -1.6321 3.6950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572751931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = 46.986964 kcal Electronic energy + Delta-G solvation = -21368.222436 eV Core-core repulsion = 18320.767448 eV Total energy + Delta-G solvation = -3047.454988 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12569 -37.50142 -36.33021 -34.71570 -33.73315 -31.79297 -30.68876 -28.95363 -25.96738 -25.56748 -23.03555 -22.74006 -22.12685 -21.97168 -20.39399 -19.97980 -17.43241 -17.01445 -16.48525 -15.79588 -15.47016 -14.91145 -14.49507 -14.10249 -13.94694 -13.75248 -13.35720 -13.35430 -12.95022 -12.58509 -12.32903 -12.18336 -12.13179 -11.92977 -11.83427 -11.73577 -11.44895 -11.36057 -11.25404 -10.92737 -10.86683 -10.78444 -10.65863 -10.47609 -10.36485 -10.16968 -9.89750 -8.68942 -8.63035 -8.42909 -8.34886 -6.44837 -4.16175 3.34785 3.41614 3.44666 3.62050 3.64835 3.74007 3.77120 4.12030 4.38738 4.44583 4.50545 4.61935 4.71980 4.76536 4.85174 4.90032 5.01885 5.14516 5.21949 5.32968 5.33753 5.40491 5.42988 5.52722 5.58668 5.59625 5.63908 5.69902 5.76692 5.86431 5.88008 5.92524 5.98291 6.06657 6.23429 6.31352 6.56299 6.79701 7.03008 7.07110 7.21814 7.36185 8.01375 8.33381 8.51275 8.77562 9.55035 10.95957 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.003458 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.875085 B = 8096.351315 C = 8884.872586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.057 3.943 3 H 0.053 0.947 4 C -0.112 4.112 5 C 0.085 3.915 6 H 0.089 0.911 7 N -0.683 5.683 8 C 0.065 3.935 9 C 0.017 3.983 10 H 0.099 0.901 11 C 0.254 3.746 12 N -0.474 5.474 13 C 0.018 3.982 14 C -0.607 4.607 15 H 0.051 0.949 16 C 0.021 3.979 17 N -0.908 5.908 18 Si 1.066 2.934 19 H -0.286 1.286 20 H -0.288 1.288 21 H -0.281 1.281 22 C -0.001 4.001 23 N -0.473 5.473 24 C 0.008 3.992 25 C -0.216 4.216 26 C -0.167 4.167 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.341 0.659 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.017 0.983 36 H 0.028 0.972 37 H 0.269 0.731 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.273 8.054 11.091 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.051 4.051 3 H 0.071 0.929 4 C -0.150 4.150 5 C -0.026 4.026 6 H 0.107 0.893 7 N -0.313 5.313 8 C -0.065 4.065 9 C -0.005 4.005 10 H 0.117 0.883 11 C -0.063 4.063 12 N -0.151 5.151 13 C -0.020 4.020 14 C -0.645 4.645 15 H 0.069 0.931 16 C -0.184 4.184 17 N -0.544 5.544 18 Si 0.894 3.106 19 H -0.213 1.213 20 H -0.214 1.214 21 H -0.207 1.207 22 C -0.131 4.131 23 N -0.196 5.196 24 C -0.102 4.102 25 C -0.255 4.255 26 C -0.205 4.205 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.636 7.156 8.613 20.891 hybrid contribution -0.637 1.168 1.647 2.117 sum -18.273 8.324 10.260 22.549 Atomic orbital electron populations 1.21711 0.93781 1.02507 1.01267 1.22688 0.96050 0.96070 0.90250 0.92858 1.22447 0.96355 0.99463 0.96779 1.22308 0.90790 1.00258 0.89238 0.89257 1.60699 1.06142 1.05834 1.58648 1.22124 0.90079 0.95496 0.98812 1.19033 0.95693 1.03235 0.82541 0.88302 1.28786 0.90790 0.91987 0.94763 1.81013 1.11339 1.09952 1.12809 1.19278 0.91493 0.93512 0.97752 1.21967 0.95881 1.07439 1.39187 0.93103 1.25791 1.01794 0.94726 0.96077 1.70805 1.32524 1.17834 1.33225 0.83579 0.75495 0.75496 0.76067 1.21278 1.21415 1.20669 1.24102 0.90433 1.00673 0.97859 1.65236 1.17605 1.34938 1.01793 1.22784 0.98315 0.98449 0.90602 1.23545 0.94788 1.01504 1.05643 1.22999 1.02758 0.99204 0.95490 0.92920 0.92238 0.91777 0.89972 0.90680 0.84047 0.90404 0.93334 0.96461 0.95431 0.92052 0.90080 0.92478 0.86909 0.87894 0.88847 0.88689 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.37 37.16 0.35 -0.72 16 2 C 0.06 0.52 2.81 -66.08 -0.19 0.34 16 3 H 0.05 0.49 8.00 -51.93 -0.42 0.08 16 4 C -0.11 -1.12 6.34 -25.35 -0.16 -1.28 16 5 C 0.09 0.92 3.36 -66.33 -0.22 0.70 16 6 H 0.09 1.02 7.86 -51.93 -0.41 0.62 16 7 N -0.68 -8.47 5.91 -105.26 -0.62 -9.09 16 8 C 0.06 0.92 4.88 -3.82 -0.02 0.90 16 9 C 0.02 0.31 2.35 -93.41 -0.22 0.09 16 10 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 11 C 0.25 5.32 13.67 -20.74 -0.28 5.03 16 12 N -0.47 -10.84 18.54 42.18 0.78 -10.06 16 13 C 0.02 0.42 3.74 -27.88 -0.10 0.31 16 14 C -0.61 -16.28 8.60 -34.44 -0.30 -16.58 16 15 H 0.05 1.37 7.59 -52.49 -0.40 0.97 16 16 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 17 N -0.91 -26.68 13.65 55.43 0.76 -25.92 16 18 Si 1.07 24.95 29.90 -169.99 -5.08 19.86 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.00 -0.01 4.84 -2.19 -0.01 -0.02 16 23 N -0.47 -4.60 5.27 -214.27 -1.13 -5.73 16 24 C 0.01 0.07 5.83 -67.71 -0.39 -0.32 16 25 C -0.22 -1.82 9.35 -26.73 -0.25 -2.07 16 26 C -0.17 -1.38 10.36 -26.73 -0.28 -1.66 16 27 H 0.05 0.39 7.66 -51.92 -0.40 -0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 31 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 32 H 0.34 3.90 8.16 -39.29 -0.32 3.57 16 33 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 34 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.02 0.42 8.01 -51.93 -0.42 0.00 16 36 H 0.03 0.62 8.01 -51.93 -0.42 0.21 16 37 H 0.27 7.74 7.22 -40.82 -0.29 7.44 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.57 5.61 -51.93 -0.29 0.27 16 40 H 0.11 0.90 7.59 -51.93 -0.39 0.51 16 41 H 0.10 0.94 5.80 -51.93 -0.30 0.64 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -30.32 355.95 -9.57 -39.89 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.46 Total: 0.48 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.17 Total: -14.80 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.21 Total: -50.80 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.32 -9.57 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572751931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.879 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds